UHGV-1541913

Genome information

Genome length 25,108 bps

CDS count 36

Completeness 53.34% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-1541913
vOTU ID	vOTU-036591
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0185429
BioSample	SAMEA2042742
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.34% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.1
Jumbo phage	No

Genome content
Genome length	25,108 bps
GC content	51.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	90.64%
Average CDS length	635.42 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1541913_4	PHROG	phrog_18725	NA	unknown function
UHGV-1541913_4	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-1541913_5	PHROG	phrog_13879	NA	unknown function
UHGV-1541913_5	eggNOG-mapper	1203606.HMPREF1526_00968	NA	NA
UHGV-1541913_5	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-1541913_6	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1541913_7	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1541913_7	eggNOG-mapper	742742.HMPREF9452_00386	Phage tail tape measure protein TP901	NA
UHGV-1541913_7	COG	COG5412	Phage-related protein	NA
UHGV-1541913_7	Structural annotation	COG1340	NA	NA
UHGV-1541913_8	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1541913_8	eggNOG-mapper	1121334.KB911068_gene2299	Phage tail tape measure protein, TP901 family	NA
UHGV-1541913_8	COG	COG5283	Phage-related tail protein	NA
UHGV-1541913_8	Structural annotation	COG5280	NA	NA
UHGV-1541913_9	PHROG	phrog_706	NA	unknown function
UHGV-1541913_9	UniRef90	UniRef90_UPI0013DE0285	Gp15 family bacteriophage protein	NA
UHGV-1541913_9	eggNOG-mapper	411461.DORFOR_01174	Bacteriophage Gp15 protein	NA
UHGV-1541913_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1541913_9	Structural annotation	PF06854	NA	NA
UHGV-1541913_10	PHROG	phrog_4450	NA	unknown function
UHGV-1541913_10	UniRef90	UniRef90_A0A7M2RHR3	AP endonuclease	NA
UHGV-1541913_10	eggNOG-mapper	641112.ACOK01000073_gene2902	NA	NA
UHGV-1541913_10	Pfam	PF20378	NA	DUF6673
UHGV-1541913_10	Structural annotation	PF20378	NA	NA
UHGV-1541913_11	PHROG	phrog_820	major tail protein	tail
UHGV-1541913_11	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-1541913_11	eggNOG-mapper	411471.SUBVAR_06988	NA	NA
UHGV-1541913_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1541913_12	PHROG	phrog_3266	tail completion	connector
UHGV-1541913_12	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-1541913_12	Structural annotation	PF12691	NA	NA
UHGV-1541913_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1541913_13	UniRef90	UniRef90_A0A1C5N8K8	Minor capsid protein	NA
UHGV-1541913_13	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-1541913_13	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1541913_13	Structural annotation	PF11114	NA	NA
UHGV-1541913_14	PHROG	phrog_3366	NA	unknown function
UHGV-1541913_14	eggNOG-mapper	642492.Clole_0823	NA	NA
UHGV-1541913_14	Structural annotation	PF20536	NA	NA
UHGV-1541913_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1541913_15	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-1541913_16	PHROG	phrog_29	major head protein	head and packaging
UHGV-1541913_16	UniRef90	UniRef90_UPI000CDB6260	major capsid protein	NA
UHGV-1541913_16	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-1541913_16	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1541913_16	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1541913_17	PHROG	phrog_909	major head protein	head and packaging
UHGV-1541913_17	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-1541913_18	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1541913_18	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-1541913_18	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-1541913_18	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1541913_18	Structural annotation	PF06810	NA	NA
UHGV-1541913_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1541913_20	UniRef90	UniRef90_U2SBR7	Ntox50 domain-containing protein	NA
UHGV-1541913_20	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-1541913_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1541913_20	COG	COG2369	NA	NA
UHGV-1541913_20	Structural annotation	PF06152	NA	NA
UHGV-1541913_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-1541913_21	UniRef90	UniRef90_A0A2Z4QBJ4	Portal protein	NA
UHGV-1541913_21	eggNOG-mapper	1232443.BAIA02000078_gene36	NA	NA
UHGV-1541913_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1541913_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1541913_22	PHROG	phrog_10250	NA	unknown function
UHGV-1541913_22	UniRef90	UniRef90_UPI000462EB3C	PBSX family phage terminase large subunit	NA
UHGV-1541913_22	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-1541913_22	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1541913_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1541913_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-1541913_22	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1541913_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1541913_23	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1541913_23	UniRef90	UniRef90_A0A396NMY4	Terminase small subunit	NA
UHGV-1541913_23	eggNOG-mapper	476272.RUMHYD_01754	Terminase small subunit	NA
UHGV-1541913_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1541913_23	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1541913_23	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1541913_24	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-1541913_25	PHROG	phrog_959	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1541913_25	eggNOG-mapper	1291050.JAGE01000002_gene3265	NA	NA
UHGV-1541913_25	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1541913_26	KOfam	K02647	cdaR; carbohydrate diacid regulator	NA
UHGV-1541913_26	UniRef90	UniRef90_R7QWE6	HTH_30 domain-containing protein	NA
UHGV-1541913_26	eggNOG-mapper	1280685.AUKC01000019_gene338	PucR C-terminal helix-turn-helix domain	NA
UHGV-1541913_26	Pfam	PF13556	PucR C-terminal helix-turn-helix domain	HTH_30
UHGV-1541913_26	COG	COG3835	Sugar diacid utilization regulator CdaR	NA
UHGV-1541913_26	Structural annotation	PF13556, TIGR00637, COG2771	NA	NA
UHGV-1541913_28	PHROG	phrog_6721	NA	unknown function
UHGV-1541913_28	eggNOG-mapper	665956.HMPREF1032_00655	NA	NA
UHGV-1541913_28	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-1541913_29	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1541913_29	UniRef90	UniRef90_UPI0019572D92	NA	NA
UHGV-1541913_29	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-1541913_29	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-1541913_30	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1541913_31	PHROG	phrog_474	phosphofructokinase	other
UHGV-1541913_31	UniRef90	UniRef90_A0A1Y4SQK6	NA	NA
UHGV-1541913_31	eggNOG-mapper	1123247.AUIJ01000002_gene2234	NA	NA
UHGV-1541913_31	Pfam	PF19905	NA	DUF6378
UHGV-1541913_31	Structural annotation	PF19905	NA	NA
UHGV-1541913_34	Pfam	PF04448	NA	DUF551
UHGV-1541913_34	Structural annotation	PF04448, NF041588	NA	NA
UHGV-1541913_36	PHROG	phrog_7839	NA	unknown function
UHGV-1541913_36	eggNOG-mapper	665956.HMPREF1032_03091	NA	NA
UHGV-1541913_36	Structural annotation	PF08860	NA	NA