UHGV-1542126

Genome information

Genome length 33,085 bps

CDS count 43

Completeness 94.04% (high-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-1542126
vOTU ID	vOTU-076002
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0264046
BioSample	SAMEA3449417
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.04% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.27
Jumbo phage	No

Genome content
Genome length	33,085 bps
GC content	39.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	91.15%
Average CDS length	703.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1542126_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1542126_1	PHROG	phrog_20388	endolysin	lysis
UHGV-1542126_1	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1542126_1	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1542126_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1542126_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1542126_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1542126_1	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-1542126_2	PHROG	phrog_443	holin	lysis
UHGV-1542126_2	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-1542126_2	eggNOG-mapper	1235797.C816_04172	Putative lactococcus lactis phage r1t holin	NA
UHGV-1542126_2	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1542126_2	Structural annotation	PF16945	NA	NA
UHGV-1542126_3	PHROG	phrog_1863	NA	unknown function
UHGV-1542126_3	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-1542126_3	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA
UHGV-1542126_5	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-1542126_5	Structural annotation	PF10651, PF15432, PF08931, TIGR03711	NA	NA
UHGV-1542126_6	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1542126_6	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-1542126_6	eggNOG-mapper	1567011.A0A0A7RUI9_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-1542126_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1542126_6	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1542126_6	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1542126_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1542126_7	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-1542126_7	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-1542126_7	COG	COG4722	Phage-related protein YomH	NA
UHGV-1542126_7	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1542126_8	PHROG	phrog_5218	NA	unknown function
UHGV-1542126_8	UniRef90	UniRef90_UPI000E474EFE	phage tail tape measure protein	NA
UHGV-1542126_8	eggNOG-mapper	999413.HMPREF1094_02001	Phage-related minor tail protein	NA
UHGV-1542126_8	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1542126_8	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1542126_8	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1542126_9	Structural annotation	PF11836	NA	NA
UHGV-1542126_10	PHROG	phrog_88	major tail protein	tail
UHGV-1542126_10	eggNOG-mapper	1321782.HMPREF1986_01362	phage major tail protein, phi13 family	NA
UHGV-1542126_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1542126_10	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1542126_11	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-1542126_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1542126_11	Structural annotation	TIGR01725	NA	NA
UHGV-1542126_12	eggNOG-mapper	272623.L59277	NA	NA
UHGV-1542126_12	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-1542126_13	PHROG	phrog_19734	NA	unknown function
UHGV-1542126_13	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-1542126_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1542126_14	PHROG	phrog_749	NA	unknown function
UHGV-1542126_14	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-1542126_14	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-1542126_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-1542126_15	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-1542126_15	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-1542126_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1542126_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1542126_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1542126_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1542126_16	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1542126_16	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1542126_16	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1542126_16	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-1542126_16	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1542126_16	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1542126_16	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1542126_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-1542126_17	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-1542126_17	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-1542126_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1542126_17	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1542126_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1542126_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1542126_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1542126_18	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-1542126_18	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-1542126_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1542126_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1542126_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1542126_18	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1542126_19	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1542126_19	UniRef90	UniRef90_A0A1M5U1D5	Phage terminase, small subunit	NA
UHGV-1542126_19	eggNOG-mapper	1211817.CCAT010000053_gene2128	NA	NA
UHGV-1542126_19	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1542126_19	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1542126_20	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1542126_20	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-1542126_20	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-1542126_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1542126_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1542126_21	PHROG	phrog_31049	NA	unknown function
UHGV-1542126_21	eggNOG-mapper	431943.CKL_4074	NA	NA
UHGV-1542126_21	Structural annotation	TIGR01636	NA	NA
UHGV-1542126_22	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1542126_22	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-1542126_22	Structural annotation	PF21578, NF041486	NA	NA
UHGV-1542126_25	PHROG	phrog_8684	NA	unknown function
UHGV-1542126_25	UniRef90	UniRef90_A0A374DV44	YopX domain-containing protein	NA
UHGV-1542126_25	eggNOG-mapper	563031.HMPREF0666_01127	YopX protein	NA
UHGV-1542126_25	Pfam	PF09643	YopX protein	YopX
UHGV-1542126_25	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1542126_25	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1542126_26	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1542126_26	UniRef90	UniRef90_A0A374DVG7	HNH endonuclease	NA
UHGV-1542126_26	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-1542126_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1542126_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1542126_26	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-1542126_28	PHROG	phrog_824	NA	unknown function
UHGV-1542126_28	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-1542126_28	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-1542126_28	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1542126_28	Structural annotation	PF08774	NA	NA
UHGV-1542126_29	PHROG	phrog_24518	NA	unknown function
UHGV-1542126_29	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-1542126_30	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1542126_30	PHROG	phrog_1	integrase	integration and excision
UHGV-1542126_30	UniRef90	UniRef90_UPI001B3C6404	tyrosine-type recombinase/integrase	NA
UHGV-1542126_30	eggNOG-mapper	1235793.C809_01951	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1542126_30	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-1542126_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1542126_30	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1542126_30	Structural annotation	PF00589, PF13495, MF_01808, TIGR02224, COG4973	NA	NA
UHGV-1542126_31	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1542126_31	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-1542126_31	eggNOG-mapper	394503.Ccel_3305	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-1542126_31	Pfam	PF00249	Myb-like DNA-binding domain	Myb_DNA-binding
UHGV-1542126_31	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-1542126_31	Structural annotation	PF11112, NF040595	NA	NA
UHGV-1542126_32	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-1542126_32	PHROG	phrog_5696	NA	unknown function
UHGV-1542126_32	UniRef90	UniRef90_UPI001B3C9C54	N-6 DNA methylase	NA
UHGV-1542126_32	eggNOG-mapper	397291.C804_06560	N-6 DNA Methylase	NA
UHGV-1542126_32	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-1542126_32	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-1542126_32	Structural annotation	COG0286	NA	NA
UHGV-1542126_33	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1542126_33	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1542126_33	UniRef90	UniRef90_UPI000E47CAB6	ParB/RepB/Spo0J family partition protein	NA
UHGV-1542126_33	eggNOG-mapper	445972.ANACOL_00162	ParB-like nuclease domain	NA
UHGV-1542126_33	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1542126_33	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-1542126_33	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-1542126_33	Structural annotation	PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-1542126_35	PHROG	phrog_6058	NA	unknown function
UHGV-1542126_35	Structural annotation	NF033787	NA	NA
UHGV-1542126_36	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-1542126_37	UniRef90	UniRef90_UPI0015F48AC0	Lar family restriction alleviation protein	NA
UHGV-1542126_37	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1542126_37	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1542126_38	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-1542126_38	Structural annotation	PF15597	NA	NA
UHGV-1542126_39	UniRef90	UniRef90_UPI001494A832	helix-turn-helix domain-containing protein	NA
UHGV-1542126_39	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1542126_39	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-1542126_40	UniRef90	UniRef90_A0A373XLN2	XRE family transcriptional regulator	NA
UHGV-1542126_40	eggNOG-mapper	1235793.C809_00679	Helix-turn-helix XRE-family like proteins	NA
UHGV-1542126_40	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1542126_40	Structural annotation	PF05339, NF007257, COG3655	NA	NA
UHGV-1542126_41	PHROG	phrog_1914	NA	unknown function
UHGV-1542126_41	UniRef90	UniRef90_A0A374NDM7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1542126_41	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-1542126_41	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1542126_41	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1542126_41	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1542126_42	UniRef90	UniRef90_UPI000E52DA24	zinc ribbon domain-containing protein	NA
UHGV-1542126_42	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-1542126_42	Structural annotation	PF18933, PF02883, MF_02248, NF008627, COG5435, COG2847	NA	NA
UHGV-1542126_43	KOfam	K14059	int; integrase	NA
UHGV-1542126_43	PHROG	phrog_1	integrase	integration and excision
UHGV-1542126_43	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-1542126_43	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-1542126_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1542126_43	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1542126_43	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA