UHGV-1542522

Genome information

Genome length 41,107 bps

CDS count 44

Completeness 99.90% (high-quality)

geNomad score 0.9148

Prediction confidence Confident

Genome information
Genome ID	UHGV-1542522
vOTU ID	vOTU-009879
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0283313
BioSample	SAMEA2737902
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9148
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.12
Jumbo phage	No

Genome content
Genome length	41,107 bps
GC content	62.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	90.92%
Average CDS length	852.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1542522_1	UniRef90	UniRef90_UPI001D14837A	type IV secretory system conjugative DNA transfer family protein	NA
UHGV-1542522_1	eggNOG-mapper	1123013.AUIC01000006_gene1299	COG0433 Predicted ATPase	NA
UHGV-1542522_1	COG	COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	NA
UHGV-1542522_2	eggNOG-mapper	1120960.ATXG01000020_gene3298	NA	NA
UHGV-1542522_4	UniRef90	UniRef90_UPI000481F2AD	NERD domain-containing protein	NA
UHGV-1542522_4	eggNOG-mapper	1123013.AUIC01000006_gene1272	Nuclease-related domain	NA
UHGV-1542522_4	Pfam	PF08378	Nuclease-related domain	NERD
UHGV-1542522_5	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-1542522_5	UniRef90	UniRef90_A0A511FGV6	DOD-type homing endonuclease domain-containing protein	NA
UHGV-1542522_5	eggNOG-mapper	479431.Namu_2687	ftsk spoiiie	NA
UHGV-1542522_5	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-1542522_5	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-1542522_7	eggNOG-mapper	1227261.HMPREF0043_00179	NA	NA
UHGV-1542522_10	eggNOG-mapper	479431.Namu_2735	Tfp pilus assembly protein FimV	NA
UHGV-1542522_10	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-1542522_13	eggNOG-mapper	337191.KTR9_1336	NA	NA
UHGV-1542522_14	eggNOG-mapper	337191.KTR9_1337	NA	NA
UHGV-1542522_15	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1542522_15	UniRef90	UniRef90_A0A2I1IQI5	Bro-N domain-containing protein	NA
UHGV-1542522_15	eggNOG-mapper	888439.HMPREF9240_01816	BRO family, N-terminal domain	NA
UHGV-1542522_15	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1542522_15	COG	COG3617	Prophage antirepressor	NA
UHGV-1542522_15	Structural annotation	PF10547, TIGR02681, COG3617	NA	NA
UHGV-1542522_20	KOfam	K07316	mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1542522_20	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1542522_20	UniRef90	UniRef90_UPI0015F38D56	site-specific DNA-methyltransferase	NA
UHGV-1542522_20	eggNOG-mapper	1150398.JIBJ01000004_gene2610	DNA methylase	NA
UHGV-1542522_20	PADLOC	MTase_III_00003	Type III methyltransferase	RM
UHGV-1542522_20	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1542522_20	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-1542522_21	PHROG	phrog_21731	NA	unknown function
UHGV-1542522_21	eggNOG-mapper	1120941.AUBL01000053_gene1009	NA	NA
UHGV-1542522_21	PADLOC	icity0044	NA	CRISPR-CAS
UHGV-1542522_22	KOfam	K14680	E6.5.1.3; RNA ligase [EC:6.5.1.3]	NA
UHGV-1542522_22	PHROG	phrog_8238	RNA ligase	DNA, RNA and nucleotide metabolism
UHGV-1542522_22	UniRef90	UniRef90_UPI00109E1812	AAA family ATPase	NA
UHGV-1542522_22	eggNOG-mapper	1120941.AUBL01000009_gene826	AAA domain	NA
UHGV-1542522_22	Pfam	PF13671	AAA domain	AAA_33
UHGV-1542522_22	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-1542522_22	Pfam	PF09511	RNA ligase	RNA_lig_T4_1
UHGV-1542522_22	COG	COG0639	Diadenosine tetraphosphatase ApaH/serine/threonine protein phosphatase, PP2A family	NA
UHGV-1542522_22	Structural annotation	PF09511, PF13671, MF_04149, MF_01443, MF_03171, TIGR04075, COG5324, COG4639, COG2129	NA	NA
UHGV-1542522_23	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-1542522_23	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1542522_23	UniRef90	UniRef90_A0A7T0KCM1	Phage antirepressor KilAC domain-containing protein	NA
UHGV-1542522_23	eggNOG-mapper	1122147.AUEH01000067_gene277	BRO family, N-terminal domain	NA
UHGV-1542522_23	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-1542522_23	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1542522_23	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1542522_23	COG	COG3617	Prophage antirepressor	NA
UHGV-1542522_25	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-1542522_25	PHROG	phrog_1499	NA	unknown function
UHGV-1542522_25	UniRef90	UniRef90_UPI0011BD8B01	AAA family ATPase	NA
UHGV-1542522_25	eggNOG-mapper	1566993.A0A0A7HER9_9CAUD	NA	NA
UHGV-1542522_25	Pfam	PF13476	AAA domain	AAA_23
UHGV-1542522_25	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-1542522_29	PHROG	phrog_4657	NA	unknown function
UHGV-1542522_29	eggNOG-mapper	1349820.M707_16640	NA	NA
UHGV-1542522_31	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-1542522_31	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-1542522_31	UniRef90	UniRef90_A0A7Z1AHF7	NA	NA
UHGV-1542522_31	eggNOG-mapper	1828.JOKB01000008_gene540	NA	NA
UHGV-1542522_31	Pfam	PF12684	NA	DUF3799
UHGV-1542522_31	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1542522_31	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-1542522_32	PHROG	phrog_3657	NA	unknown function
UHGV-1542522_32	eggNOG-mapper	47716.JOFH01000001_gene2463	NA	NA
UHGV-1542522_33	KOfam	K18955	whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator	NA
UHGV-1542522_33	PHROG	phrog_472	WhiB transcriptional factor	transcription regulation
UHGV-1542522_33	UniRef90	UniRef90_A0A5J6TN49	WhiB family transcription factor	NA
UHGV-1542522_33	eggNOG-mapper	298654.FraEuI1c_5836	Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA	NA
UHGV-1542522_33	Pfam	PF02467	Transcription factor WhiB	Whib
UHGV-1542522_34	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1542522_34	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1542522_34	UniRef90	UniRef90_UPI00069E2E31	site-specific DNA-methyltransferase	NA
UHGV-1542522_34	eggNOG-mapper	1074309.G1JX70_9CAUD	N-methyltransferase activity	NA
UHGV-1542522_34	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1542522_34	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1542522_34	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-1542522_35	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1542522_35	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1542522_35	UniRef90	UniRef90_UPI0002DDD4D6	DNA cytosine methyltransferase	NA
UHGV-1542522_35	eggNOG-mapper	521393.JH806633_gene1246	C-5 cytosine-specific DNA methylase	NA
UHGV-1542522_35	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1542522_35	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1542522_35	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1542522_35	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1542522_36	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1542522_36	UniRef90	UniRef90_A0A3G2KER7	Holliday junction resolvase	NA
UHGV-1542522_36	eggNOG-mapper	1410634.JHVD01000032_gene426	NA	NA
UHGV-1542522_36	Structural annotation	COG1591	NA	NA
UHGV-1542522_38	PHROG	phrog_7314	NA	unknown function
UHGV-1542522_39	PHROG	phrog_2447	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1542522_39	UniRef90	UniRef90_A0A086Z1J1	NA	NA
UHGV-1542522_39	eggNOG-mapper	1437605.BACT_1093	NA	NA
UHGV-1542522_39	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-1542522_40	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1542522_40	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1542522_40	UniRef90	UniRef90_UPI001C58A644	AAA family ATPase	NA
UHGV-1542522_40	eggNOG-mapper	1414742.V5R9D2_9CAUD	DNA helicase activity	NA
UHGV-1542522_40	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1542522_40	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1542522_40	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1542522_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1542522_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1542522_41	UniRef90	UniRef90_UPI001E43C360	single-stranded DNA-binding protein	NA
UHGV-1542522_41	eggNOG-mapper	521393.JH806633_gene1261	Single-strand binding protein family	NA
UHGV-1542522_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1542522_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1542522_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1542522_41	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-1542522_44	PHROG	phrog_6988	NA	unknown function
UHGV-1542522_44	UniRef90	UniRef90_A0A0S2P3B1	NA	NA
UHGV-1542522_44	eggNOG-mapper	471853.Bcav_1498	NA	NA
UHGV-1542522_44	PADLOC	ThsB1_00017	TIR-like	Thoeris
UHGV-1542522_44	Pfam	PF08937	Thoeris protein ThsB, TIR-like domain	ThsB_TIR
UHGV-1542522_44	Structural annotation	PF08937, MF_03036, COG3613	NA	NA