UHGV-1542583

Genome information

Genome length 40,148 bps

CDS count 63

Completeness 98.54% (high-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-1542583
vOTU ID	vOTU-014092
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0306649
BioSample	SAMEA3708572
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.54% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.29
Jumbo phage	No

Genome content
Genome length	40,148 bps
GC content	51.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	89.54%
Average CDS length	575.48 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1542583_1	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-1542583_2	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-1542583_3	PHROG	phrog_16490	NA	unknown function
UHGV-1542583_3	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1542583_8	PHROG	phrog_918	NA	unknown function
UHGV-1542583_8	UniRef90	UniRef90_UPI000EC62F11	NA	NA
UHGV-1542583_8	eggNOG-mapper	411902.CLOBOL_05677	NA	NA
UHGV-1542583_8	Pfam	PF19791	NA	DUF6275
UHGV-1542583_8	Structural annotation	PF19791	NA	NA
UHGV-1542583_9	PHROG	phrog_15303	NA	unknown function
UHGV-1542583_10	PHROG	phrog_1863	NA	unknown function
UHGV-1542583_10	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-1542583_11	KOfam	K07273	acm; lysozyme	NA
UHGV-1542583_11	PHROG	phrog_291	endolysin	lysis
UHGV-1542583_11	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-1542583_11	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-1542583_11	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1542583_11	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1542583_11	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-1542583_12	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-1542583_12	PHROG	phrog_7158	NA	unknown function
UHGV-1542583_12	eggNOG-mapper	931276.Cspa_c34720	Calcineurin-like phosphoesterase	NA
UHGV-1542583_12	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-1542583_12	Structural annotation	PF10651, PF12850, MF_00905, NF008359, NF038186, COG1409	NA	NA
UHGV-1542583_14	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1542583_14	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-1542583_14	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-1542583_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1542583_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1542583_14	COG	COG4926	Phage-related protein	NA
UHGV-1542583_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1542583_15	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1542583_15	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-1542583_15	eggNOG-mapper	748727.CLJU_c03670	tail component	NA
UHGV-1542583_15	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1542583_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-1542583_15	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1542583_16	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-1542583_16	UniRef90	UniRef90_A0A2A7ALS3	TMP_3 domain-containing protein	NA
UHGV-1542583_16	eggNOG-mapper	596328.HMPREF0578_1241	phage tail tape measure protein	NA
UHGV-1542583_16	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1542583_16	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1542583_16	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1542583_16	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1542583_19	PHROG	phrog_88	major tail protein	tail
UHGV-1542583_19	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-1542583_19	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-1542583_19	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1542583_19	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1542583_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1542583_20	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-1542583_20	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-1542583_20	Structural annotation	TIGR01725	NA	NA
UHGV-1542583_21	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-1542583_21	Structural annotation	PF05657, COG3167	NA	NA
UHGV-1542583_22	PHROG	phrog_19734	NA	unknown function
UHGV-1542583_22	UniRef90	UniRef90_A0A0D8I708	Phage head-tail joining protein	NA
UHGV-1542583_22	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-1542583_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1542583_23	PHROG	phrog_749	NA	unknown function
UHGV-1542583_23	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-1542583_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-1542583_24	UniRef90	UniRef90_A0A2A7B712	Phage major capsid protein	NA
UHGV-1542583_24	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-1542583_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1542583_24	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-1542583_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1542583_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1542583_24	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1542583_25	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1542583_25	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1542583_25	UniRef90	UniRef90_UPI001C0ECD60	Clp protease ClpP	NA
UHGV-1542583_25	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-1542583_25	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1542583_25	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1542583_25	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1542583_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-1542583_26	UniRef90	UniRef90_A0A2A7B6S8	Phage portal protein	NA
UHGV-1542583_26	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-1542583_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1542583_26	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1542583_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1542583_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1542583_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1542583_27	UniRef90	UniRef90_A0A2A7ALT4	Terminase	NA
UHGV-1542583_27	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-1542583_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1542583_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1542583_27	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1542583_28	PHROG	phrog_13845	NA	unknown function
UHGV-1542583_28	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-1542583_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1542583_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1542583_29	UniRef90	UniRef90_A0A2A7B6I3	HNH domain-containing protein	NA
UHGV-1542583_29	eggNOG-mapper	610130.Closa_0739	HNH nucleases	NA
UHGV-1542583_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1542583_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1542583_35	Structural annotation	PF14354	NA	NA
UHGV-1542583_37	Structural annotation	PF04545	NA	NA
UHGV-1542583_38	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1542583_38	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1542583_38	UniRef90	UniRef90_A0A2A7B6Q0	ParB domain-containing protein	NA
UHGV-1542583_38	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-1542583_38	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1542583_38	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1542583_38	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-1542583_39	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1542583_39	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1542583_39	UniRef90	UniRef90_A0A2A7B6H3	AAA_31 domain-containing protein	NA
UHGV-1542583_39	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-1542583_39	Pfam	PF13614	AAA domain	AAA_31
UHGV-1542583_39	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1542583_39	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1542583_41	PHROG	phrog_6969	NA	unknown function
UHGV-1542583_41	eggNOG-mapper	748224.HMPREF9436_00735	NA	NA
UHGV-1542583_41	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1542583_41	Pfam	PF19481	NA	DUF6017
UHGV-1542583_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1542583_41	Structural annotation	PF19481, PF01978, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-1542583_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1542583_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1542583_42	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-1542583_42	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-1542583_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1542583_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1542583_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1542583_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1542583_42	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1542583_43	PHROG	phrog_7566	NA	unknown function
UHGV-1542583_43	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-1542583_47	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1542583_47	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-1542583_47	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1542583_48	PHROG	phrog_14970	NA	unknown function
UHGV-1542583_48	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1542583_48	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1542583_51	Structural annotation	PF10346, MF_00337, NF010671	NA	NA
UHGV-1542583_55	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1542583_55	PHROG	phrog_1	integrase	integration and excision
UHGV-1542583_55	UniRef90	UniRef90_A0A8E3SJJ8	Tyrosine-type recombinase/integrase	NA
UHGV-1542583_55	eggNOG-mapper	565653.EGBG_01953	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1542583_55	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-1542583_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1542583_55	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1542583_55	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-1542583_56	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-1542583_56	PHROG	phrog_5696	NA	unknown function
UHGV-1542583_56	UniRef90	UniRef90_A0A1Q6PTX9	N6_Mtase domain-containing protein	NA
UHGV-1542583_56	eggNOG-mapper	718252.FP2_00930	N-6 DNA Methylase	NA
UHGV-1542583_56	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-1542583_56	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-1542583_56	Structural annotation	COG0286	NA	NA
UHGV-1542583_59	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-1542583_60	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1542583_60	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1542583_60	UniRef90	UniRef90_A0A3D4L0P7	HTH cro/C1-type domain-containing protein	NA
UHGV-1542583_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1542583_60	COG	COG3780	DNA endonuclease related to intein-encoded endonucleases	NA
UHGV-1542583_60	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-1542583_63	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-1542583_63	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-1542583_63	eggNOG-mapper	1121333.JMLH01000063_gene1384	SWIM zinc finger	NA
UHGV-1542583_63	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-1542583_63	Structural annotation	PF00929, PF00533, MF_00157, NF004844, COG0847	NA	NA