UHGV-1543057

Genome information

vOTU vOTU-019194

Genome length 25,264 bps

CDS count 32

Completeness 56.04% (medium-quality)

geNomad score 0.9830

Prediction confidence Confident

Genome information
Genome ID	UHGV-1543057
vOTU ID	vOTU-019194
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0190464
BioSample	SAMEA2042218
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9830
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.43
Jumbo phage	No

Genome content
Genome length	25,264 bps
GC content	42.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	92.36%
Average CDS length	730.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1543057_2	PHROG	phrog_6616	tail protein	tail
UHGV-1543057_2	UniRef90	UniRef90_A0A395X7B3	Peptidase S74 domain-containing protein	NA
UHGV-1543057_2	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-1543057_2	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-1543057_3	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1543057_4	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1543057_4	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-1543057_4	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-1543057_4	COG	COG1511	NA	NA
UHGV-1543057_4	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1543057_5	PHROG	phrog_706	NA	unknown function
UHGV-1543057_5	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-1543057_5	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-1543057_5	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1543057_5	Structural annotation	PF06854	NA	NA
UHGV-1543057_6	PHROG	phrog_11299	NA	unknown function
UHGV-1543057_6	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-1543057_6	Structural annotation	PF10666	NA	NA
UHGV-1543057_7	PHROG	phrog_3099	NA	unknown function
UHGV-1543057_7	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-1543057_7	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1543057_8	PHROG	phrog_3266	tail completion	connector
UHGV-1543057_8	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-1543057_8	Structural annotation	PF12691	NA	NA
UHGV-1543057_9	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1543057_9	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-1543057_9	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-1543057_9	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1543057_9	Structural annotation	PF11114	NA	NA
UHGV-1543057_10	PHROG	phrog_3366	NA	unknown function
UHGV-1543057_10	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-1543057_10	Structural annotation	PF20536, COG5614	NA	NA
UHGV-1543057_11	PHROG	phrog_1129	holin	lysis
UHGV-1543057_11	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-1543057_11	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-1543057_11	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1543057_11	Structural annotation	PF06946	NA	NA
UHGV-1543057_12	PHROG	phrog_1233	NA	unknown function
UHGV-1543057_12	eggNOG-mapper	1256908.HMPREF0373_00487	NA	NA
UHGV-1543057_12	Structural annotation	PF13058	NA	NA
UHGV-1543057_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1543057_13	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-1543057_14	PHROG	phrog_544	major head protein	head and packaging
UHGV-1543057_14	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-1543057_14	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-1543057_14	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-1543057_14	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1543057_15	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1543057_15	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-1543057_15	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-1543057_15	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1543057_16	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-1543057_17	PHROG	phrog_20016	NA	unknown function
UHGV-1543057_17	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1543057_17	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-1543057_17	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1543057_18	PHROG	phrog_16490	NA	unknown function
UHGV-1543057_18	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-1543057_19	PHROG	phrog_22984	NA	unknown function
UHGV-1543057_20	PHROG	phrog_21718	NA	unknown function
UHGV-1543057_20	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-1543057_21	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-1543057_21	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-1543057_22	PHROG	phrog_3754	NA	unknown function
UHGV-1543057_22	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-1543057_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1543057_23	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-1543057_23	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-1543057_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1543057_23	COG	COG2369	NA	NA
UHGV-1543057_23	Structural annotation	PF06152	NA	NA
UHGV-1543057_25	PHROG	phrog_2310	NA	unknown function
UHGV-1543057_26	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-1543057_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-1543057_27	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-1543057_27	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-1543057_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1543057_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1543057_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1543057_28	UniRef90	UniRef90_A0A6L8SYJ6	PBSX family phage terminase large subunit	NA
UHGV-1543057_28	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-1543057_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1543057_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1543057_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1543057_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-1543057_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1543057_31	PHROG	phrog_10714	NA	unknown function