UHGV-1544180

Genome information

vOTU vOTU-019932

Genome length 30,964 bps

CDS count 47

Completeness 82.86% (medium-quality)

geNomad score 0.9649

Prediction confidence Confident

Genome information
Genome ID	UHGV-1544180
vOTU ID	vOTU-019932
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0258381
BioSample	SAMEA2580103
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9649
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.37
Jumbo phage	No

Genome content
Genome length	30,964 bps
GC content	30.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	93.83%
Average CDS length	622.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1544180_4	eggNOG-mapper	469604.HMPREF0946_00800	NA	NA
UHGV-1544180_4	Structural annotation	PF10282, MF_00923, TIGR03300, COG1520	NA	NA
UHGV-1544180_5	eggNOG-mapper	469604.HMPREF0946_00801	NA	NA
UHGV-1544180_5	Structural annotation	PF17212	NA	NA
UHGV-1544180_6	PHROG	phrog_199	holin	lysis
UHGV-1544180_6	UniRef90	UniRef90_C3WE82	Toxin secretion/phage lysis holin	NA
UHGV-1544180_6	eggNOG-mapper	469616.FMAG_01750	Bacteriophage holin family	NA
UHGV-1544180_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1544180_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1544180_6	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1544180_7	eggNOG-mapper	469616.FMAG_00543	NA	NA
UHGV-1544180_8	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-1544180_8	PHROG	phrog_465	endolysin	lysis
UHGV-1544180_8	UniRef90	UniRef90_C3WE84	L-alanyl-D-glutamate peptidase	NA
UHGV-1544180_8	eggNOG-mapper	469616.FMAG_01752	Peptidase M15	NA
UHGV-1544180_8	COG	COG3108	NA	NA
UHGV-1544180_8	Structural annotation	PF02557, NF000380, COG2173	NA	NA
UHGV-1544180_10	UniRef90	UniRef90_UPI001B8CB209	penicillin-binding protein	NA
UHGV-1544180_10	eggNOG-mapper	469618.FVAG_00811	NA	NA
UHGV-1544180_12	PHROG	phrog_26817	NA	unknown function
UHGV-1544180_13	PHROG	phrog_5668	tail fiber protein	tail
UHGV-1544180_13	eggNOG-mapper	469618.FVAG_02954	Chaperone of endosialidase	NA
UHGV-1544180_13	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1544180_13	COG	COG3209	NA	NA
UHGV-1544180_14	KOfam	K16617	COL13A; collagen type XIII alpha	NA
UHGV-1544180_14	PHROG	phrog_5073	tail fiber protein	tail
UHGV-1544180_14	eggNOG-mapper	469618.FVAG_02954	Chaperone of endosialidase	NA
UHGV-1544180_14	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1544180_14	COG	COG3209	NA	NA
UHGV-1544180_15	UniRef90	UniRef90_UPI001B8B5011	phage major capsid protein	NA
UHGV-1544180_15	Structural annotation	PF19821, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1544180_18	PHROG	phrog_332	head-tail adaptor	connector
UHGV-1544180_18	UniRef90	UniRef90_UPI001F2DCBDE	portal protein	NA
UHGV-1544180_18	eggNOG-mapper	469604.HMPREF0946_00811	Bacteriophage head to tail connecting protein	NA
UHGV-1544180_18	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-1544180_18	Structural annotation	PF12236, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1544180_20	Structural annotation	PF11039, MF_02210, NF011709, COG1670	NA	NA
UHGV-1544180_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1544180_21	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-1544180_21	UniRef90	UniRef90_UPI001B8C17F0	PBSX family phage terminase large subunit	NA
UHGV-1544180_21	eggNOG-mapper	1395513.P343_07995	Phage terminase large subunit	NA
UHGV-1544180_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1544180_21	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1544180_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1544180_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-1544180_21	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1544180_22	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-1544180_22	UniRef90	UniRef90_UPI001F3248D1	LuxR C-terminal-related transcriptional regulator	NA
UHGV-1544180_22	eggNOG-mapper	469616.FMAG_01960	NA	NA
UHGV-1544180_22	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1544180_22	COG	COG5484	NA	NA
UHGV-1544180_22	Structural annotation	PF13384, NF040595, COG3677	NA	NA
UHGV-1544180_25	PHROG	phrog_824	NA	unknown function
UHGV-1544180_25	UniRef90	UniRef90_A0A0S2ZD03	VRR-NUC domain-containing protein	NA
UHGV-1544180_25	eggNOG-mapper	469618.FVAG_00788	VRR_NUC	NA
UHGV-1544180_25	Structural annotation	PF03838, MF_00130, NF002585, COG3331	NA	NA
UHGV-1544180_29	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1544180_29	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1544180_29	UniRef90	UniRef90_UPI001030905D	ATP-binding protein	NA
UHGV-1544180_29	eggNOG-mapper	469616.FMAG_02319	IstB-like ATP binding protein	NA
UHGV-1544180_29	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1544180_29	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1544180_29	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-1544180_30	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1544180_30	eggNOG-mapper	469616.FMAG_00687	DnaD domain protein	NA
UHGV-1544180_30	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1544180_30	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1544180_32	PHROG	phrog_585	NA	unknown function
UHGV-1544180_32	UniRef90	UniRef90_UPI001F2A53D2	NA	NA
UHGV-1544180_32	eggNOG-mapper	526218.Sterm_0828	NA	NA
UHGV-1544180_32	Pfam	PF10711	NA	DUF2513
UHGV-1544180_32	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-1544180_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1544180_42	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1544180_42	UniRef90	UniRef90_UPI0007887343	helix-turn-helix transcriptional regulator	NA
UHGV-1544180_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1544180_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1544180_42	Structural annotation	PF01381, MF_02017, TIGR02607, COG3655	NA	NA
UHGV-1544180_46	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1544180_46	UniRef90	UniRef90_UPI001F490CFD	YqaJ viral recombinase family protein	NA
UHGV-1544180_46	eggNOG-mapper	469616.FMAG_01935	YqaJ-like viral recombinase domain	NA
UHGV-1544180_46	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1544180_46	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1544180_47	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1544180_47	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1544180_47	UniRef90	UniRef90_C6JQL9	Recombinase, phage RecT family	NA
UHGV-1544180_47	eggNOG-mapper	469618.FVAG_00771	RecT family	NA
UHGV-1544180_47	Pfam	PF03837	RecT family	RecT
UHGV-1544180_47	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1544180_47	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1544180_47	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA