UHGV-1544436

Genome information

vOTU vOTU-019672

Genome length 46,478 bps

CDS count 65

Completeness 87.36% (medium-quality)

geNomad score 0.9516

Prediction confidence Confident

Genome information
Genome ID	UHGV-1544436
vOTU ID	vOTU-019672
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0307321
BioSample	SAMEA2466976
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.36% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9516
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.12
Jumbo phage	No

Genome content
Genome length	46,478 bps
GC content	32.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	91.35%
Average CDS length	655.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1544436_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1544436_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1544436_1	UniRef90	UniRef90_UPI00037CFE90	tyrosine-type recombinase/integrase	NA
UHGV-1544436_1	eggNOG-mapper	420247.Msm_1640	Phage integrase family	NA
UHGV-1544436_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1544436_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1544436_2	UniRef90	UniRef90_UPI0005941DF6	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-1544436_2	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-1544436_8	PHROG	phrog_5063	NA	unknown function
UHGV-1544436_8	UniRef90	UniRef90_UPI001782251D	NA	NA
UHGV-1544436_8	eggNOG-mapper	561231.Pecwa_1755	NA	NA
UHGV-1544436_8	Structural annotation	PF08960	NA	NA
UHGV-1544436_9	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1544436_9	UniRef90	UniRef90_A0A843G3Q1	AAA family ATPase (Fragment)	NA
UHGV-1544436_9	Pfam	PF13479	AAA domain	AAA_24
UHGV-1544436_11	UniRef90	UniRef90_A0A831K2T9	DNA primase	NA
UHGV-1544436_11	eggNOG-mapper	589924.Ferp_2048	Bifunctional DNA primase polymerase	NA
UHGV-1544436_21	UniRef90	UniRef90_A5UNT8	ASCH domain-containing protein	NA
UHGV-1544436_21	eggNOG-mapper	420247.Msm_1661	ASCH domain	NA
UHGV-1544436_21	Pfam	PF04266	ASCH domain	ASCH
UHGV-1544436_21	COG	COG2411	Predicted RNA-binding protein, contains PUA-like ASCH domain	NA
UHGV-1544436_24	KOfam	K10848	ERCC4, XPF; DNA excision repair protein ERCC-4 [EC:3.1.-.-]	NA
UHGV-1544436_24	UniRef90	UniRef90_A0A843F5S5	ERCC4 domain-containing protein	NA
UHGV-1544436_24	eggNOG-mapper	1131266.ARWQ01000010_gene52	ERCC4 domain	NA
UHGV-1544436_24	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-1544436_24	Pfam	PF14520	Helix-hairpin-helix domain	HHH_5
UHGV-1544436_24	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-1544436_25	PHROG	phrog_13750	NA	unknown function
UHGV-1544436_25	eggNOG-mapper	634498.mru_0276	NA	NA
UHGV-1544436_27	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1544436_27	UniRef90	UniRef90_D3DZV6	ParB-like nuclease domain-containing protein	NA
UHGV-1544436_27	eggNOG-mapper	634498.mru_0280	PFAM ParB domain protein nuclease	NA
UHGV-1544436_27	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1544436_27	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1544436_27	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1544436_27	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-1544436_28	PHROG	phrog_887	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-1544436_28	eggNOG-mapper	665956.HMPREF1032_03076	NA	NA
UHGV-1544436_29	KOfam	K09125	yhhQ; queuosine precursor transporter	NA
UHGV-1544436_29	PHROG	phrog_4899	NA	unknown function
UHGV-1544436_29	UniRef90	UniRef90_A0A2Z4L5Z4	Probable queuosine precursor transporter	NA
UHGV-1544436_29	eggNOG-mapper	420247.Msm_0646	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage	NA
UHGV-1544436_29	Pfam	PF02592	Putative vitamin uptake transporter	Vut_1
UHGV-1544436_29	NCBIFam	TIGR00697.1	queuosine precursor transporter	NA
UHGV-1544436_29	COG	COG1738	NA	NA
UHGV-1544436_30	PHROG	phrog_4102	terminase small subunit	head and packaging
UHGV-1544436_30	UniRef90	UniRef90_A0A3A9HMD9	Helix-turn-helix domain-containing protein	NA
UHGV-1544436_30	eggNOG-mapper	1094980.Mpsy_0567	COG3415 Transposase and inactivated derivatives	NA
UHGV-1544436_30	COG	COG3415	CRISPR-associated protein Csa3, CARF domain	NA
UHGV-1544436_30	Structural annotation	PF02796	NA	NA
UHGV-1544436_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1544436_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1544436_31	UniRef90	UniRef90_A0A1H7I7W4	Phage terminase, large subunit, PBSX family	NA
UHGV-1544436_31	eggNOG-mapper	1329516.JPST01000014_gene657	Phage terminase, large subunit	NA
UHGV-1544436_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1544436_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1544436_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-1544436_31	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1544436_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-1544436_32	UniRef90	UniRef90_A0A843F333	Phage portal protein	NA
UHGV-1544436_32	eggNOG-mapper	105425.BBPL01000001_gene6251	Portal protein	NA
UHGV-1544436_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1544436_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1544436_33	PHROG	phrog_6577	NA	unknown function
UHGV-1544436_33	UniRef90	UniRef90_A0A1V5MNL9	Phage Mu protein F like protein	NA
UHGV-1544436_33	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1544436_33	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1544436_33	COG	COG2369	NA	NA
UHGV-1544436_34	UniRef90	UniRef90_A0A162FDD0	Caudovirus prohead protease	NA
UHGV-1544436_34	eggNOG-mapper	224719.Abm4_1060	NA	NA
UHGV-1544436_35	Pfam	PF17236	NA	DUF5309
UHGV-1544436_35	Pfam	PF17802	Prealbumin-like fold domain	SpaA
UHGV-1544436_36	UniRef90	UniRef90_A0A843GCW4	Carboxypeptidase regulatory-like domain-containing protein	NA
UHGV-1544436_36	Pfam	PF17802	Prealbumin-like fold domain	SpaA
UHGV-1544436_37	Structural annotation	PF20387, TIGR02215	NA	NA
UHGV-1544436_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1544436_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1544436_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1544436_42	Structural annotation	PF10758, COG3497	NA	NA
UHGV-1544436_45	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1544436_45	eggNOG-mapper	634498.mru_0315	NA	NA
UHGV-1544436_45	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1544436_47	UniRef90	UniRef90_A0A843F863	Transglutaminase domain-containing protein	NA
UHGV-1544436_47	eggNOG-mapper	420247.Msm_0219	Pseudomurein-binding repeat	NA
UHGV-1544436_47	Pfam	PF01841	Transglutaminase-like superfamily	Transglut_core
UHGV-1544436_47	COG	COG1305	Transglutaminase-like enzyme, putative cysteine protease	NA
UHGV-1544436_52	PHROG	phrog_6	baseplate protein	tail
UHGV-1544436_52	UniRef90	UniRef90_A0A843FFH9	Baseplate J/gp47 family protein	NA
UHGV-1544436_52	eggNOG-mapper	332101.JIBU02000023_gene4800	Baseplate J-like protein	NA
UHGV-1544436_52	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1544436_52	COG	COG3299	NA	NA
UHGV-1544436_53	UniRef90	UniRef90_A0A165ZZV4	NA	NA
UHGV-1544436_53	Structural annotation	PF00927, MF_00791, NF007507	NA	NA
UHGV-1544436_55	Structural annotation	PF12571	NA	NA
UHGV-1544436_57	eggNOG-mapper	420247.Msm_1689	NA	NA
UHGV-1544436_57	Structural annotation	PF16640, NF032891	NA	NA
UHGV-1544436_58	PHROG	phrog_19695	NA	unknown function
UHGV-1544436_60	PHROG	phrog_10485	NA	unknown function
UHGV-1544436_60	eggNOG-mapper	420247.Msm_1688	NA	NA
UHGV-1544436_60	Pfam	PF12789	Phage tail repeat like	PTR
UHGV-1544436_61	UniRef90	UniRef90_A0A2A2HFP7	Spore cortex-lytic enzyme	NA
UHGV-1544436_61	Pfam	PF09373	Pseudomurein-binding repeat	PMBR
UHGV-1544436_61	Structural annotation	PF03412, NF033920, COG3271	NA	NA
UHGV-1544436_62	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1544436_62	UniRef90	UniRef90_A0A2S5R0C3	GIY-YIG domain-containing protein	NA
UHGV-1544436_62	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-1544436_62	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-1544436_63	Structural annotation	PF09388	NA	NA
UHGV-1544436_64	eggNOG-mapper	224719.Abm4_1051	NA	NA