UHGV-1546506

Genome information

vOTU vOTU-062099

Genome length 48,568 bps

CDS count 69

Completeness 97.38% (high-quality)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-1546506
vOTU ID	vOTU-062099
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0324936
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.38% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.17
Jumbo phage	No

Genome content
Genome length	48,568 bps
GC content	45.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	92.11%
Average CDS length	650.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1546506_1	PHROG	phrog_31303	NA	unknown function
UHGV-1546506_1	eggNOG-mapper	1121100.JCM6294_1111	Phage minor structural protein	NA
UHGV-1546506_1	COG	COG4926	Phage-related protein	NA
UHGV-1546506_2	PHROG	phrog_14220	NA	unknown function
UHGV-1546506_2	eggNOG-mapper	1121100.JCM6294_1110	NA	NA
UHGV-1546506_3	PHROG	phrog_10156	NA	unknown function
UHGV-1546506_3	eggNOG-mapper	484018.BACPLE_00655	NA	NA
UHGV-1546506_4	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-1546506_4	PHROG	phrog_21917	NA	unknown function
UHGV-1546506_4	UniRef90	UniRef90_A0A1V5TJK1	Chromosome partition protein Smc	NA
UHGV-1546506_4	eggNOG-mapper	1121100.JCM6294_1106	nuclear chromosome segregation	NA
UHGV-1546506_4	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1546506_5	PHROG	phrog_15994	NA	unknown function
UHGV-1546506_5	eggNOG-mapper	457424.BFAG_02431	NA	NA
UHGV-1546506_5	Structural annotation	PF20336, TIGR01674	NA	NA
UHGV-1546506_6	PHROG	phrog_6767	NA	unknown function
UHGV-1546506_6	UniRef90	UniRef90_A0A7X8L4Z2	BACON domain-containing protein	NA
UHGV-1546506_6	eggNOG-mapper	1121100.JCM6294_1103	NA	NA
UHGV-1546506_6	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1546506_7	PHROG	phrog_5597	NA	unknown function
UHGV-1546506_7	eggNOG-mapper	1121100.JCM6294_1102	NA	NA
UHGV-1546506_7	Structural annotation	PF05657	NA	NA
UHGV-1546506_8	PHROG	phrog_5377	NA	unknown function
UHGV-1546506_8	UniRef90	UniRef90_UPI001562E7E4	HK97 gp10 family phage protein	NA
UHGV-1546506_8	eggNOG-mapper	457424.BFAG_02428	NA	NA
UHGV-1546506_9	PHROG	phrog_13251	NA	unknown function
UHGV-1546506_9	eggNOG-mapper	357276.EL88_12785	NA	NA
UHGV-1546506_9	Structural annotation	PF19586	NA	NA
UHGV-1546506_10	PHROG	phrog_7935	NA	unknown function
UHGV-1546506_10	eggNOG-mapper	1284775.HMPREF1640_07085	NA	NA
UHGV-1546506_10	Pfam	PF20449	NA	DUF6706
UHGV-1546506_10	Structural annotation	PF20449	NA	NA
UHGV-1546506_12	PHROG	phrog_29	major head protein	head and packaging
UHGV-1546506_12	UniRef90	UniRef90_UPI000E0A6C9B	major capsid protein	NA
UHGV-1546506_12	eggNOG-mapper	886379.AEWI01000001_gene1737	Phage major capsid protein E	NA
UHGV-1546506_12	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1546506_12	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-1546506_13	PHROG	phrog_38330	NA	unknown function
UHGV-1546506_13	eggNOG-mapper	525373.HMPREF0766_12425	NA	NA
UHGV-1546506_13	Structural annotation	PF02924	NA	NA
UHGV-1546506_14	PHROG	phrog_5824	NA	unknown function
UHGV-1546506_14	eggNOG-mapper	1121100.JCM6294_1096	NA	NA
UHGV-1546506_16	PHROG	phrog_7625	head morphogenesis	head and packaging
UHGV-1546506_16	UniRef90	UniRef90_A5ZE37	Conserved domain protein	NA
UHGV-1546506_16	eggNOG-mapper	1121100.JCM6294_1090	NA	NA
UHGV-1546506_17	PHROG	phrog_1365	NA	unknown function
UHGV-1546506_18	PHROG	phrog_64	portal protein	head and packaging
UHGV-1546506_18	UniRef90	UniRef90_U2DU17	Phage portal protein, SPP1 family	NA
UHGV-1546506_18	eggNOG-mapper	1121100.JCM6294_1089	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1546506_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1546506_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1546506_19	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1546506_19	UniRef90	UniRef90_UPI0013D520BF	phage terminase large subunit	NA
UHGV-1546506_19	eggNOG-mapper	457424.BFAG_02416	domain protein	NA
UHGV-1546506_19	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1546506_19	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1546506_19	COG	COG5410	NA	NA
UHGV-1546506_19	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1546506_20	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1546506_20	UniRef90	UniRef90_A0A6F9ZGM3	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-1546506_20	eggNOG-mapper	1284775.HMPREF1640_07170	Helix-turn-helix of insertion element transposase	NA
UHGV-1546506_20	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-1546506_20	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1546506_20	Structural annotation	PF07141	NA	NA
UHGV-1546506_21	eggNOG-mapper	1286631.X805_04840	NA	NA
UHGV-1546506_21	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-1546506_22	eggNOG-mapper	1286631.X805_04820	NA	NA
UHGV-1546506_22	Structural annotation	PF20691, MF_00057, NF038299, COG1216	NA	NA
UHGV-1546506_23	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1546506_23	eggNOG-mapper	357276.EL88_12705	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1546506_23	COG	COG0863	DNA modification methylase	NA
UHGV-1546506_23	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-1546506_28	UniRef90	UniRef90_UPI00097ACBA9	NA	NA
UHGV-1546506_28	Pfam	PF14902	NA	DUF4494
UHGV-1546506_31	PHROG	phrog_28300	NA	unknown function
UHGV-1546506_31	Structural annotation	PF13066, COG4014	NA	NA
UHGV-1546506_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1546506_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1546506_33	UniRef90	UniRef90_UPI000E289CE1	single-stranded DNA-binding protein	NA
UHGV-1546506_33	eggNOG-mapper	1267533.KB906733_gene3542	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1546506_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1546506_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1546506_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1546506_35	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1546506_35	UniRef90	UniRef90_UPI00097D89AC	SAM-dependent methyltransferase	NA
UHGV-1546506_35	eggNOG-mapper	619693.HMPREF6745_2501	Methyltransferase domain	NA
UHGV-1546506_35	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-1546506_35	COG	COG1041	tRNA G10 N-methylase Trm11	NA
UHGV-1546506_35	Structural annotation	PF05148, MF_01057, NF033398, COG1041	NA	NA
UHGV-1546506_36	PHROG	phrog_111	DNA methyltransferase	other
UHGV-1546506_36	UniRef90	UniRef90_M1ZZH0	Putative phage N-6-adenine-methyltransferase	NA
UHGV-1546506_36	eggNOG-mapper	1567011.A0A0A7RUD1_9VIRU	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-1546506_36	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-1546506_36	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-1546506_36	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-1546506_37	PHROG	phrog_874	NA	unknown function
UHGV-1546506_37	eggNOG-mapper	1122973.KB904232_gene340	NA	NA
UHGV-1546506_37	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1546506_39	PHROG	phrog_98	NA	unknown function
UHGV-1546506_39	UniRef90	UniRef90_UPI00189AE9AA	YopX family protein	NA
UHGV-1546506_39	eggNOG-mapper	1122981.AUME01000026_gene537	YopX protein	NA
UHGV-1546506_39	Pfam	PF09643	YopX protein	YopX
UHGV-1546506_39	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1546506_39	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1546506_43	PHROG	phrog_9236	pyrophosphatase	other
UHGV-1546506_43	eggNOG-mapper	411901.BACCAC_01178	NA	NA
UHGV-1546506_43	Structural annotation	PF08761, COG4508	NA	NA
UHGV-1546506_44	PHROG	phrog_32703	NA	unknown function
UHGV-1546506_44	UniRef90	UniRef90_A0A1H4SPI8	Predicted RNA methylase	NA
UHGV-1546506_44	eggNOG-mapper	411154.GFO_2470	DNA restriction-modification system	NA
UHGV-1546506_44	Pfam	PF13708	NA	DUF4942
UHGV-1546506_44	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-1546506_44	Structural annotation	PF13708, PF00398, MF_00607, NF011489, COG2263	NA	NA
UHGV-1546506_45	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1546506_45	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1546506_45	UniRef90	UniRef90_A0A2L2WV01	ATP-binding protein	NA
UHGV-1546506_45	eggNOG-mapper	411901.BACCAC_01187	DNA-dependent DNA replication	NA
UHGV-1546506_45	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1546506_45	Structural annotation	PF00308, MF_01509, NF005931, COG1484	NA	NA
UHGV-1546506_46	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1546506_46	UniRef90	UniRef90_J2JYZ1	NA	NA
UHGV-1546506_46	eggNOG-mapper	470145.BACCOP_01173	HNH endonuclease	NA
UHGV-1546506_46	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1546506_46	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1546506_46	Structural annotation	PF14297	NA	NA
UHGV-1546506_48	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1546506_48	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1546506_48	UniRef90	UniRef90_D4IIX7	Metal-dependent hydrolases of the beta-lactamase superfamily I	NA
UHGV-1546506_48	eggNOG-mapper	1227276.HMPREF9148_00129	NA	NA
UHGV-1546506_48	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1546506_48	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1546506_48	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-1546506_49	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1546506_49	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1546506_49	UniRef90	UniRef90_A0A495KGH9	Recombination protein RecT	NA
UHGV-1546506_49	eggNOG-mapper	1416760.AYMS01000012_gene893	RecT family	NA
UHGV-1546506_49	Pfam	PF03837	RecT family	RecT
UHGV-1546506_49	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1546506_49	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1546506_49	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1546506_50	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1546506_50	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1546506_50	UniRef90	UniRef90_U2CKT2	AAA_23 domain-containing protein	NA
UHGV-1546506_50	eggNOG-mapper	1227276.HMPREF9148_00127	AAA domain	NA
UHGV-1546506_50	Pfam	PF13476	AAA domain	AAA_23
UHGV-1546506_50	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1546506_50	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1546506_51	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1546506_51	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1546506_51	UniRef90	UniRef90_UPI0006917AD3	phage regulatory protein/antirepressor Ant	NA
UHGV-1546506_51	eggNOG-mapper	1268240.ATFI01000007_gene446	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-1546506_51	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1546506_51	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1546506_51	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1546506_51	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-1546506_52	PHROG	phrog_4074	NA	unknown function
UHGV-1546506_52	UniRef90	UniRef90_V7HYF3	Putative bacteriophage protein	NA
UHGV-1546506_52	eggNOG-mapper	742767.HMPREF9456_02400	NA	NA
UHGV-1546506_53	UniRef90	UniRef90_UPI00097B1328	NA	NA
UHGV-1546506_53	eggNOG-mapper	357276.EL88_12580	NA	NA
UHGV-1546506_53	Pfam	PF12964	NA	DUF3853
UHGV-1546506_53	Structural annotation	PF12964, NF040990, COG3311	NA	NA
UHGV-1546506_54	eggNOG-mapper	457424.BFAG_02382	NA	NA
UHGV-1546506_54	Structural annotation	PF19555	NA	NA
UHGV-1546506_55	UniRef90	UniRef90_A0A4Q0J971	XRE family transcriptional regulator	NA
UHGV-1546506_55	eggNOG-mapper	1349822.NSB1T_12435	NA	NA
UHGV-1546506_56	UniRef90	UniRef90_A0A7C6G1L2	BIG2 domain-containing protein	NA
UHGV-1546506_56	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1546506_56	COG	COG5492	NA	NA
UHGV-1546506_56	Structural annotation	PF02368, PF07467, NF005261	NA	NA
UHGV-1546506_57	PHROG	phrog_9710	NA	unknown function
UHGV-1546506_57	eggNOG-mapper	393921.HQ45_06745	NA	NA
UHGV-1546506_57	Structural annotation	PF07022	NA	NA
UHGV-1546506_58	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1546506_58	PHROG	phrog_1	integrase	integration and excision
UHGV-1546506_58	UniRef90	UniRef90_W4P695	Integrase	NA
UHGV-1546506_58	eggNOG-mapper	1121100.JCM6294_1052	Belongs to the 'phage' integrase family	NA
UHGV-1546506_58	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-1546506_58	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1546506_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1546506_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1546506_58	Structural annotation	PF00589, PF13102, PF17293, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1546506_63	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-1546506_63	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-1546506_65	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1546506_65	PHROG	phrog_822	amidase	lysis
UHGV-1546506_65	UniRef90	UniRef90_UPI0013EB9B1C	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1546506_65	eggNOG-mapper	537011.PREVCOP_04796	COG COG3023 Negative regulator of beta-lactamase expression	NA
UHGV-1546506_65	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1546506_65	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1546506_65	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-1546506_66	PHROG	phrog_20732	NA	unknown function
UHGV-1546506_66	UniRef90	UniRef90_UPI0003AD759F	phage holin family protein	NA
UHGV-1546506_66	eggNOG-mapper	619693.HMPREF6745_2544	NA	NA
UHGV-1546506_66	Structural annotation	PF05105, TIGR01593	NA	NA
UHGV-1546506_67	UniRef90	UniRef90_A0A3E5AG31	ArsR family transcriptional regulator	NA
UHGV-1546506_67	eggNOG-mapper	537011.PREVCOP_04218	NA	NA
UHGV-1546506_68	UniRef90	UniRef90_UPI0018838658	NA	NA
UHGV-1546506_68	eggNOG-mapper	1392486.JIAF01000004_gene2031	NA	NA
UHGV-1546506_68	Pfam	PF16476	NA	DUF5053
UHGV-1546506_68	Structural annotation	PF16476	NA	NA