UHGV-1551402

Genome information

vOTU vOTU-072085

Genome length 38,624 bps

CDS count 53

Completeness 95.29% (high-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-1551402
vOTU ID	vOTU-072085
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0295939
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.29% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.81
Jumbo phage	No

Genome content
Genome length	38,624 bps
GC content	49.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	92.78%
Average CDS length	677.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1551402_1	KOfam	K14059	int; integrase	NA
UHGV-1551402_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1551402_1	UniRef90	UniRef90_A0A6I2UVX5	Site-specific integrase	NA
UHGV-1551402_1	eggNOG-mapper	1123250.KB908381_gene1631	Belongs to the 'phage' integrase family	NA
UHGV-1551402_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1551402_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1551402_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1551402_2	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-1551402_3	PHROG	phrog_20936	NA	unknown function
UHGV-1551402_3	UniRef90	UniRef90_UPI0013E038FD	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1551402_3	eggNOG-mapper	1321782.HMPREF1986_02242	NA	NA
UHGV-1551402_3	Structural annotation	PF06114	NA	NA
UHGV-1551402_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1551402_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1551402_4	UniRef90	UniRef90_A0A6I2UY37	Helix-turn-helix transcriptional regulator	NA
UHGV-1551402_4	eggNOG-mapper	1111454.HMPREF1250_1028	carbohydrate binding	NA
UHGV-1551402_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1551402_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1551402_4	COG	COG2390	DNA-binding transcriptional regulator LsrR, DeoR family	NA
UHGV-1551402_5	UniRef90	UniRef90_UPI0005658318	helix-turn-helix domain-containing protein	NA
UHGV-1551402_5	eggNOG-mapper	706433.HMPREF9430_01294	Helix-turn-helix XRE-family like proteins	NA
UHGV-1551402_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1551402_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1551402_6	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1551402_6	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1551402_6	UniRef90	UniRef90_A0A3A6EG47	Phage regulatory protein/antirepressor Ant	NA
UHGV-1551402_6	eggNOG-mapper	1423775.BAMN01000006_gene1075	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-1551402_6	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1551402_6	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1551402_6	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-1551402_6	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1551402_6	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-1551402_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1551402_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1551402_7	UniRef90	UniRef90_A0A3S8RPC7	XRE family transcriptional regulator	NA
UHGV-1551402_7	eggNOG-mapper	642492.Clole_2801	Helix-turn-helix XRE-family like proteins	NA
UHGV-1551402_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1551402_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1551402_7	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-1551402_9	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1551402_9	UniRef90	UniRef90_A0A6I2UX12	Siphovirus Gp157 family protein	NA
UHGV-1551402_9	eggNOG-mapper	936572.HMPREF1148_0678	Siphovirus Gp157	NA
UHGV-1551402_9	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1551402_9	Structural annotation	PF05565, NF002139	NA	NA
UHGV-1551402_11	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1551402_11	UniRef90	UniRef90_A0A6I2UYB0	ATP-binding protein	NA
UHGV-1551402_11	eggNOG-mapper	1273103.NM10_06861	AAA domain	NA
UHGV-1551402_11	Pfam	PF13479	AAA domain	AAA_24
UHGV-1551402_11	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-1551402_12	PHROG	phrog_2698	NA	unknown function
UHGV-1551402_12	UniRef90	UniRef90_A0A3P1S6D7	NA	NA
UHGV-1551402_12	eggNOG-mapper	1235792.C808_05389	NA	NA
UHGV-1551402_12	Structural annotation	PF05037	NA	NA
UHGV-1551402_13	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-1551402_13	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1551402_13	UniRef90	UniRef90_A0A6I2UVY4	DEAD/DEAH box helicase	NA
UHGV-1551402_13	eggNOG-mapper	645991.Sgly_0323	type III restriction enzyme, res subunit	NA
UHGV-1551402_13	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-1551402_13	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1551402_13	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1551402_13	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1551402_13	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-1551402_14	eggNOG-mapper	484770.UFO1_2489	NA	NA
UHGV-1551402_14	Pfam	PF18892	NA	DUF5651
UHGV-1551402_14	Structural annotation	PF18892	NA	NA
UHGV-1551402_16	PHROG	phrog_236	nucleotide kinase	other
UHGV-1551402_16	eggNOG-mapper	469604.HMPREF0946_01115	NA	NA
UHGV-1551402_16	Pfam	PF11753	NA	DUF3310
UHGV-1551402_18	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1551402_18	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1551402_18	UniRef90	UniRef90_A0A0X8KCT0	Helicase	NA
UHGV-1551402_18	eggNOG-mapper	349161.Dred_1192	DEAD-like helicases superfamily	NA
UHGV-1551402_18	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1551402_18	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1551402_18	Structural annotation	PF06862, MF_01821, NF003426, COG0553	NA	NA
UHGV-1551402_19	KOfam	K24451	zim; modification methylase	NA
UHGV-1551402_19	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1551402_19	UniRef90	UniRef90_A0A0X8KAP9	Methyltransferase	NA
UHGV-1551402_19	eggNOG-mapper	1120971.AUCA01000053_gene371	DNA methylase	NA
UHGV-1551402_19	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-1551402_19	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1551402_19	COG	COG0863	DNA modification methylase	NA
UHGV-1551402_19	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1551402_21	Structural annotation	PF08861, COG5440	NA	NA
UHGV-1551402_23	PHROG	phrog_3878	NA	unknown function
UHGV-1551402_23	Structural annotation	PF18895	NA	NA
UHGV-1551402_26	Structural annotation	PF08861, COG5440	NA	NA
UHGV-1551402_27	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-1551402_27	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1551402_27	UniRef90	UniRef90_A0A6I2UVZ3	AAA family ATPase	NA
UHGV-1551402_27	eggNOG-mapper	610130.Closa_1370	Primase C terminal 2 (PriCT-2)	NA
UHGV-1551402_27	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-1551402_27	Pfam	PF13481	AAA domain	AAA_25
UHGV-1551402_27	COG	COG3598	RecA-family ATPase	NA
UHGV-1551402_27	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-1551402_28	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1551402_28	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1551402_28	UniRef90	UniRef90_A0A6I2UV36	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1551402_28	eggNOG-mapper	1262914.BN533_01944	crossover junction endodeoxyribonuclease	NA
UHGV-1551402_28	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1551402_28	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1551402_28	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1551402_29	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1551402_29	UniRef90	UniRef90_UPI001A9BD19C	HNH endonuclease	NA
UHGV-1551402_29	eggNOG-mapper	536232.CLM_2937	HNH nucleases	NA
UHGV-1551402_30	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1551402_30	UniRef90	UniRef90_A0A6I2USJ9	Phage terminase small subunit P27 family	NA
UHGV-1551402_30	eggNOG-mapper	679201.HMPREF9334_00318	phage terminase small subunit	NA
UHGV-1551402_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1551402_30	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1551402_30	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1551402_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1551402_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1551402_31	UniRef90	UniRef90_A0A6I2UPS5	Terminase large subunit	NA
UHGV-1551402_31	eggNOG-mapper	679201.HMPREF9334_00319	Phage Terminase	NA
UHGV-1551402_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1551402_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1551402_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1551402_31	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1551402_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-1551402_32	UniRef90	UniRef90_A0A6I2UVC6	Phage portal protein	NA
UHGV-1551402_32	eggNOG-mapper	679201.HMPREF9334_00320	Phage portal protein	NA
UHGV-1551402_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1551402_32	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1551402_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1551402_32	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1551402_33	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1551402_33	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1551402_33	UniRef90	UniRef90_A0A6I2UVV5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1551402_33	eggNOG-mapper	1392502.JNIO01000008_gene2179	Belongs to the peptidase S14 family	NA
UHGV-1551402_33	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1551402_33	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1551402_33	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1551402_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-1551402_34	UniRef90	UniRef90_A0A6I2UX30	Phage major capsid protein	NA
UHGV-1551402_34	eggNOG-mapper	679201.HMPREF9334_00322	Phage major capsid protein, HK97 family	NA
UHGV-1551402_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1551402_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1551402_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1551402_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1551402_35	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1551402_35	UniRef90	UniRef90_A0A6I2UYD2	Phage gp6-like head-tail connector protein	NA
UHGV-1551402_35	eggNOG-mapper	679201.HMPREF9334_00323	Phage gp6-like head-tail connector protein	NA
UHGV-1551402_35	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1551402_35	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1551402_35	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1551402_36	PHROG	phrog_25	head closure Hc1	connector
UHGV-1551402_36	UniRef90	UniRef90_A0A6I2UPV7	Head-tail adaptor protein	NA
UHGV-1551402_36	eggNOG-mapper	927704.SELR_11310	Phage head-tail joining protein	NA
UHGV-1551402_36	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1551402_36	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1551402_36	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1551402_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1551402_37	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1551402_37	UniRef90	UniRef90_A0A6I2UW02	Histone H1	NA
UHGV-1551402_37	eggNOG-mapper	1280706.AUJE01000003_gene2176	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1551402_37	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1551402_37	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1551402_37	Structural annotation	TIGR01725	NA	NA
UHGV-1551402_38	UniRef90	UniRef90_J4UYQ4	PF11367 family protein	NA
UHGV-1551402_38	eggNOG-mapper	879310.HMPREF9162_1699	NA	NA
UHGV-1551402_38	Structural annotation	PF05657	NA	NA
UHGV-1551402_39	PHROG	phrog_88	major tail protein	tail
UHGV-1551402_39	UniRef90	UniRef90_A0A6I2UY66	Phage tail protein	NA
UHGV-1551402_39	eggNOG-mapper	1408423.JHYA01000001_gene904	Phage tail tube protein	NA
UHGV-1551402_39	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-1551402_39	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1551402_39	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1551402_40	PHROG	phrog_16732	NA	unknown function
UHGV-1551402_40	eggNOG-mapper	702437.HMPREF9432_00874	NA	NA
UHGV-1551402_40	Structural annotation	PF10666	NA	NA
UHGV-1551402_41	PHROG	phrog_18863	NA	unknown function
UHGV-1551402_41	UniRef90	UniRef90_I0GRY5	Putative phage tail tape measure protein	NA
UHGV-1551402_41	eggNOG-mapper	927704.SELR_18140	Protein conserved in bacteria	NA
UHGV-1551402_41	COG	COG4805	NA	NA
UHGV-1551402_42	PHROG	phrog_17796	NA	unknown function
UHGV-1551402_42	UniRef90	UniRef90_A0A7G7VIA7	Phosphoribosylformylglycinamidine cyclo-ligase	NA
UHGV-1551402_42	eggNOG-mapper	936573.HMPREF1147_1623	NA	NA
UHGV-1551402_42	Structural annotation	PF06995, TIGR02126, COG3499	NA	NA
UHGV-1551402_43	PHROG	phrog_23562	NA	unknown function
UHGV-1551402_43	eggNOG-mapper	927704.SELR_18120	NA	NA
UHGV-1551402_43	Structural annotation	PF06510, NF011796	NA	NA
UHGV-1551402_44	PHROG	phrog_24491	NA	unknown function
UHGV-1551402_44	UniRef90	UniRef90_I0GRY2	Putative phage tail protein	NA
UHGV-1551402_44	eggNOG-mapper	1123250.KB908411_gene2138	NA	NA
UHGV-1551402_47	PHROG	phrog_4105	NA	unknown function
UHGV-1551402_47	eggNOG-mapper	693746.OBV_18530	NA	NA
UHGV-1551402_49	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1551402_49	PHROG	phrog_435	endolysin	lysis
UHGV-1551402_49	UniRef90	UniRef90_A0A848B7F4	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1551402_49	eggNOG-mapper	1273103.NM10_01663	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1551402_49	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1551402_49	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1551402_51	PHROG	phrog_18996	NA	unknown function
UHGV-1551402_51	UniRef90	UniRef90_UPI0019574E97	prevent-host-death protein	NA
UHGV-1551402_51	eggNOG-mapper	1273103.NM10_01746	NA	NA
UHGV-1551402_53	PHROG	phrog_13890	NA	unknown function
UHGV-1551402_53	Structural annotation	PF10723, NF010256, COG4710	NA	NA