UHGV-1553635

Genome information

Genome length 41,146 bps

CDS count 61

Completeness 65.26% (medium-quality)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-1553635
vOTU ID	vOTU-017266
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0286719
BioSample	SAMEA2784474
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	65.26% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.22
Jumbo phage	No

Genome content
Genome length	41,146 bps
GC content	49.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	93.75%
Average CDS length	637.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1553635_1	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1553635_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1553635_1	UniRef90	UniRef90_R7DH78	HTH cro/C1-type domain-containing protein	NA
UHGV-1553635_1	eggNOG-mapper	1236514.BAKL01000083_gene4802	Transcriptional regulator	NA
UHGV-1553635_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1553635_1	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1553635_1	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-1553635_4	PHROG	phrog_11227	protease	other
UHGV-1553635_4	UniRef90	UniRef90_A0A841MSP4	Regulator of protease activity HflC (Stomatin/prohibitin superfamily)	NA
UHGV-1553635_4	eggNOG-mapper	742725.HMPREF9450_02070	NA	NA
UHGV-1553635_11	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1553635_11	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-1553635_11	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-1553635_11	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-1553635_13	eggNOG-mapper	1121100.JCM6294_521	NA	NA
UHGV-1553635_14	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1553635_14	eggNOG-mapper	1392486.JIAF01000004_gene837	NA	NA
UHGV-1553635_14	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1553635_17	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1553635_17	UniRef90	UniRef90_A0A364WBR7	NA	NA
UHGV-1553635_17	eggNOG-mapper	547042.BACCOPRO_00878	NA	NA
UHGV-1553635_17	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1553635_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1553635_18	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-1553635_18	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1553635_18	UniRef90	UniRef90_A0A396MBI3	Toprim domain-containing protein	NA
UHGV-1553635_18	eggNOG-mapper	742725.HMPREF9450_00879	NA	NA
UHGV-1553635_18	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-1553635_18	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1553635_18	COG	COG0305	Replicative DNA helicase	NA
UHGV-1553635_18	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-1553635_19	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1553635_19	eggNOG-mapper	449673.BACSTE_02198	NA	NA
UHGV-1553635_19	Structural annotation	PF02075, MF_00034, NF000711, COG2410	NA	NA
UHGV-1553635_21	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1553635_21	PHROG	phrog_363	DNA methyltransferase	other
UHGV-1553635_21	UniRef90	UniRef90_UPI000312F306	DNA cytosine methyltransferase	NA
UHGV-1553635_21	eggNOG-mapper	445970.ALIPUT_00030	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1553635_21	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1553635_21	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1553635_21	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1553635_21	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1553635_21	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1553635_22	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1553635_22	UniRef90	UniRef90_A0A412WPW6	Class I SAM-dependent methyltransferase	NA
UHGV-1553635_22	eggNOG-mapper	908612.HMPREF9720_2109	methyltransferase	NA
UHGV-1553635_22	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-1553635_22	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-1553635_22	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-1553635_22	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-1553635_24	eggNOG-mapper	742725.HMPREF9450_02087	NA	NA
UHGV-1553635_26	PHROG	phrog_10841	NA	unknown function
UHGV-1553635_26	Structural annotation	PF18350	NA	NA
UHGV-1553635_28	Structural annotation	PF04448	NA	NA
UHGV-1553635_29	PHROG	phrog_874	NA	unknown function
UHGV-1553635_29	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-1553635_29	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1553635_30	PHROG	phrog_1273	NA	unknown function
UHGV-1553635_31	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1553635_31	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-1553635_31	eggNOG-mapper	1121286.AUMT01000013_gene2680	NA	NA
UHGV-1553635_31	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1553635_32	PHROG	phrog_35741	NA	unknown function
UHGV-1553635_32	eggNOG-mapper	445970.ALIPUT_01619	NA	NA
UHGV-1553635_33	UniRef90	UniRef90_UPI00191FB118	retroviral-like aspartic protease family protein	NA
UHGV-1553635_33	Pfam	PF13650	Aspartyl protease	Asp_protease_2
UHGV-1553635_33	COG	COG3577	Predicted aspartyl protease	NA
UHGV-1553635_34	eggNOG-mapper	1235803.C825_05321	NA	NA
UHGV-1553635_34	Structural annotation	PF16509, TIGR02985, COG1595	NA	NA
UHGV-1553635_35	COG	COG2184	Fido, protein-threonine AMPylation domain	NA
UHGV-1553635_36	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-1553635_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1553635_36	UniRef90	UniRef90_UPI00168B164D	helix-turn-helix domain-containing protein	NA
UHGV-1553635_36	eggNOG-mapper	411476.BACOVA_02995	NA	NA
UHGV-1553635_36	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1553635_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1553635_36	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-1553635_39	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1553635_39	UniRef90	UniRef90_UPI0019124801	DNA-packaging protein	NA
UHGV-1553635_39	eggNOG-mapper	762984.HMPREF9445_00166	DNA-packaging protein gp3	NA
UHGV-1553635_39	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1553635_39	Structural annotation	PF16677	NA	NA
UHGV-1553635_40	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1553635_40	UniRef90	UniRef90_A0A1Y4AKJ8	Terminase	NA
UHGV-1553635_40	eggNOG-mapper	1203611.KB894548_gene2449	domain protein	NA
UHGV-1553635_40	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1553635_40	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1553635_40	COG	COG5410	NA	NA
UHGV-1553635_40	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1553635_44	Structural annotation	PF06141, NF040576, COG3167	NA	NA
UHGV-1553635_46	Structural annotation	PF16774, TIGR01633, COG3499	NA	NA
UHGV-1553635_47	Structural annotation	PF21683	NA	NA
UHGV-1553635_48	PHROG	phrog_14295	NA	unknown function
UHGV-1553635_48	eggNOG-mapper	1235803.C825_02656	NA	NA
UHGV-1553635_48	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1553635_49	eggNOG-mapper	742767.HMPREF9456_03308	NA	NA
UHGV-1553635_50	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1553635_50	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1553635_50	UniRef90	UniRef90_A0A379MU54	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1553635_50	eggNOG-mapper	1033732.CAHI01000030_gene1215	Belongs to the peptidase S14 family	NA
UHGV-1553635_50	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1553635_50	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1553635_51	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-1553635_51	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-1553635_51	eggNOG-mapper	742725.HMPREF9450_01068	NA	NA
UHGV-1553635_51	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1553635_54	PHROG	phrog_12	portal protein	head and packaging
UHGV-1553635_54	UniRef90	UniRef90_UPI001CF883FB	phage portal protein	NA
UHGV-1553635_54	eggNOG-mapper	742725.HMPREF9450_01066	Phage portal protein	NA
UHGV-1553635_54	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1553635_54	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1553635_54	Structural annotation	PF04860, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-1553635_55	eggNOG-mapper	742725.HMPREF9450_01065	NA	NA
UHGV-1553635_55	Structural annotation	PF20459	NA	NA
UHGV-1553635_57	PHROG	phrog_22609	tail fiber protein	tail
UHGV-1553635_57	eggNOG-mapper	742725.HMPREF9450_02124	NA	NA
UHGV-1553635_58	Structural annotation	PF03370	NA	NA