UHGV-1558881

Genome information

Genome length 29,997 bps

CDS count 38

Completeness 78.49% (medium-quality)

geNomad score 0.9726

Prediction confidence Confident

Genome information
Genome ID	UHGV-1558881
vOTU ID	vOTU-036830
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0239781
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9726
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.89
Jumbo phage	No

Genome content
Genome length	29,997 bps
GC content	45.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	89.55%
Average CDS length	710.29 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1558881_1	eggNOG-mapper	908339.HMPREF9265_0012	NA	NA
UHGV-1558881_2	UniRef90	UniRef90_C8P8H1	UPF0340 protein HMPREF0494_1615	NA
UHGV-1558881_2	eggNOG-mapper	908339.HMPREF9265_0013	Belongs to the UPF0340 family	NA
UHGV-1558881_2	Pfam	PF04260	NA	DUF436
UHGV-1558881_2	NCBIFam	TIGR01440.1	TIGR01440 family protein	NA
UHGV-1558881_2	COG	COG4475	NA	NA
UHGV-1558881_2	HAMAP	MF_00800	UPF0340 protein	NA
UHGV-1558881_3	PHROG	phrog_2277	NA	unknown function
UHGV-1558881_3	eggNOG-mapper	1329250.WOSG25_130040	NA	NA
UHGV-1558881_4	KOfam	K07273	acm; lysozyme	NA
UHGV-1558881_4	PHROG	phrog_35916	NA	unknown function
UHGV-1558881_4	UniRef90	UniRef90_E3CAQ3	Glycosyl hydrolase family 25	NA
UHGV-1558881_4	eggNOG-mapper	908339.HMPREF9265_0923	hydrolase, family 25	NA
UHGV-1558881_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1558881_4	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1558881_4	Structural annotation	PF01183, PF03370, NF007404, COG3757, COG5456	NA	NA
UHGV-1558881_5	PHROG	phrog_199	holin	lysis
UHGV-1558881_5	UniRef90	UniRef90_A0A7W3YCI8	Phage holin family protein	NA
UHGV-1558881_5	eggNOG-mapper	349123.Lreu23DRAFT_4194	Bacteriophage holin family	NA
UHGV-1558881_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1558881_5	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1558881_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1558881_7	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1558881_10	PHROG	phrog_10512	virion structural protein	head and packaging
UHGV-1558881_10	UniRef90	UniRef90_UPI00136857CB	BppU family phage baseplate upper protein	NA
UHGV-1558881_10	eggNOG-mapper	944562.HMPREF9102_0426	Calcineurin-like phosphoesterase	NA
UHGV-1558881_12	UniRef90	UniRef90_A0A0R1WF61	Glycosyl hydrolase family 25	NA
UHGV-1558881_12	eggNOG-mapper	575594.ACOH01000003_gene778	NA	NA
UHGV-1558881_13	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-1558881_13	PHROG	phrog_326	tail protein with endopeptidase domain	other
UHGV-1558881_13	UniRef90	UniRef90_A0A0R1U9A6	NlpC/P60 domain-containing protein	NA
UHGV-1558881_13	eggNOG-mapper	349123.Lreu23DRAFT_3983	CHAP domain	NA
UHGV-1558881_13	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1558881_13	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1558881_13	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-1558881_14	PHROG	phrog_30835	NA	unknown function
UHGV-1558881_14	UniRef90	UniRef90_A0A3C1I780	Phage tail family protein	NA
UHGV-1558881_14	eggNOG-mapper	438780.D2KRB8_9CAUD	Phage tail protein	NA
UHGV-1558881_14	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1558881_14	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1558881_15	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-1558881_15	UniRef90	UniRef90_A0A1S9ASW2	TMP_3 domain-containing protein	NA
UHGV-1558881_15	eggNOG-mapper	52979.O03937_9CAUD	peptidoglycan catabolic process	NA
UHGV-1558881_15	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1558881_15	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1558881_15	Structural annotation	PF20155, PF18013, TIGR01760, COG3941, COG3953	NA	NA
UHGV-1558881_16	PHROG	phrog_706	NA	unknown function
UHGV-1558881_16	UniRef90	UniRef90_UPI001785BB45	Gp15 family bacteriophage protein	NA
UHGV-1558881_16	eggNOG-mapper	52979.O03936_9CAUD	Bacteriophage Gp15 protein	NA
UHGV-1558881_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1558881_16	Structural annotation	PF06854	NA	NA
UHGV-1558881_17	PHROG	phrog_10257	minor head protein	head and packaging
UHGV-1558881_17	UniRef90	UniRef90_C9AN01	Predicted protein	NA
UHGV-1558881_17	eggNOG-mapper	1104325.M7W_1363	NA	NA
UHGV-1558881_18	PHROG	phrog_820	major tail protein	tail
UHGV-1558881_18	UniRef90	UniRef90_A0A1S9ATN3	Capsid protein	NA
UHGV-1558881_18	eggNOG-mapper	1140001.I571_02115	domain, Protein	NA
UHGV-1558881_18	COG	COG5492	NA	NA
UHGV-1558881_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1558881_19	PHROG	phrog_913	minor head protein	head and packaging
UHGV-1558881_19	UniRef90	UniRef90_A0A848PC31	Minor capsid protein	NA
UHGV-1558881_19	eggNOG-mapper	52979.O03934_9CAUD	Minor capsid protein from bacteriophage	NA
UHGV-1558881_19	Structural annotation	PF12691	NA	NA
UHGV-1558881_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1558881_20	UniRef90	UniRef90_UPI0011DD00B0	minor capsid protein	NA
UHGV-1558881_20	eggNOG-mapper	1229517.AMFD01000018_gene181	Minor capsid protein	NA
UHGV-1558881_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1558881_20	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1558881_21	PHROG	phrog_793	head-tail adaptor	connector
UHGV-1558881_21	UniRef90	UniRef90_A0A1S9ASR9	Capsid protein	NA
UHGV-1558881_21	eggNOG-mapper	1140001.I571_02112	Minor capsid protein	NA
UHGV-1558881_21	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-1558881_21	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1558881_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1558881_22	eggNOG-mapper	1158614.I592_01122	NA	NA
UHGV-1558881_23	PHROG	phrog_422	major head protein	head and packaging
UHGV-1558881_23	UniRef90	UniRef90_A0A0R1U3D8	Major capsid family protein	NA
UHGV-1558881_23	eggNOG-mapper	768486.EHR_02620	NA	NA
UHGV-1558881_23	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1558881_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1558881_24	UniRef90	UniRef90_A0A0R1U439	Phage minor structural protein GP20	NA
UHGV-1558881_24	eggNOG-mapper	272626.lin0108	Phage minor structural protein GP20	NA
UHGV-1558881_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1558881_24	Structural annotation	PF06810	NA	NA
UHGV-1558881_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1558881_26	UniRef90	UniRef90_UPI001959FB95	polymorphic toxin type 50 domain-containing protein	NA
UHGV-1558881_26	eggNOG-mapper	334390.LAF_0931	Phage minor capsid protein 2	NA
UHGV-1558881_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1558881_26	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-1558881_26	COG	COG2369	NA	NA
UHGV-1558881_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-1558881_27	UniRef90	UniRef90_UPI00143320AB	phage portal protein	NA
UHGV-1558881_27	eggNOG-mapper	1399941.U3PCP8_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1558881_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1558881_27	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1558881_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1558881_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1558881_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1558881_28	UniRef90	UniRef90_UPI00143310E0	PBSX family phage terminase large subunit	NA
UHGV-1558881_28	eggNOG-mapper	12348.A4L7R3_BPLLH	Pfam:Terminase_3C	NA
UHGV-1558881_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1558881_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1558881_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1558881_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1558881_29	PHROG	phrog_7344	terminase small subunit	head and packaging
UHGV-1558881_29	UniRef90	UniRef90_UPI0018843F2A	helix-turn-helix domain-containing protein	NA
UHGV-1558881_29	eggNOG-mapper	1423755.BAML01000009_gene780	NA	NA
UHGV-1558881_29	Structural annotation	PF13022	NA	NA
UHGV-1558881_30	PHROG	phrog_26406	NA	unknown function
UHGV-1558881_30	UniRef90	UniRef90_UPI0018EB487A	toll/interleukin-1 receptor domain-containing protein	NA
UHGV-1558881_30	eggNOG-mapper	927691.AEMI01000020_gene383	NA	NA
UHGV-1558881_31	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-1558881_31	UniRef90	UniRef90_E3C592	Phage transcriptional regulator, ArpU family	NA
UHGV-1558881_31	eggNOG-mapper	908339.HMPREF9265_1618	Phage transcriptional regulator, ArpU family	NA
UHGV-1558881_31	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-1558881_31	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-1558881_34	eggNOG-mapper	908339.HMPREF9265_1621	NA	NA
UHGV-1558881_36	PHROG	phrog_419	NA	unknown function
UHGV-1558881_36	UniRef90	UniRef90_UPI001E2C68AB	PGDYG domain-containing protein	NA
UHGV-1558881_36	eggNOG-mapper	908339.HMPREF9265_1623	NA	NA
UHGV-1558881_36	Structural annotation	PF14083	NA	NA
UHGV-1558881_37	PHROG	phrog_29768	NA	unknown function
UHGV-1558881_38	PHROG	phrog_26088	NA	unknown function