UHGV-1658604

Genome information

Genome length 23,088 bps

CDS count 28

Completeness 50.39% (medium-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-1658604
vOTU ID	vOTU-021832
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0169232
BioSample	SAMN05414891
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.39% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.83
Jumbo phage	No

Genome content
Genome length	23,088 bps
GC content	48.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	95.13%
Average CDS length	788.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1658604_1	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1658604_1	UniRef90	UniRef90_H1BAR7	VRR-NUC domain-containing protein	NA
UHGV-1658604_1	eggNOG-mapper	742741.HMPREF9475_02388	COG NOG18350 non supervised orthologous group	NA
UHGV-1658604_1	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-1658604_2	KOfam	K20093	ERCC6L, PICH; DNA excision repair protein ERCC-6-like [EC:5.6.2.-]	NA
UHGV-1658604_2	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1658604_2	UniRef90	UniRef90_H1BAR8	Helicase ATP-binding domain-containing protein	NA
UHGV-1658604_2	eggNOG-mapper	742741.HMPREF9475_02387	COG COG0553 Superfamily II DNA RNA helicases, SNF2 family	NA
UHGV-1658604_2	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-1658604_2	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1658604_2	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1658604_2	Structural annotation	PF16203, PF04851, MF_01821, NF041790, COG0553	NA	NA
UHGV-1658604_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1658604_3	UniRef90	UniRef90_A0A3N0HWA5	NA	NA
UHGV-1658604_3	eggNOG-mapper	742741.HMPREF9475_02386	sigma factor activity	NA
UHGV-1658604_3	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1658604_3	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-1658604_4	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1658604_4	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1658604_4	UniRef90	UniRef90_A0A2T3FP00	HNH endonuclease	NA
UHGV-1658604_4	eggNOG-mapper	908340.HMPREF9406_0157	HNH endonuclease	NA
UHGV-1658604_4	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1658604_4	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1658604_4	Structural annotation	PF01844, COG1403	NA	NA
UHGV-1658604_5	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1658604_5	UniRef90	UniRef90_UPI00083463D6	P27 family phage terminase small subunit	NA
UHGV-1658604_5	eggNOG-mapper	742741.HMPREF9475_02384	Phage terminase, small subunit	NA
UHGV-1658604_5	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1658604_5	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1658604_7	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1658604_7	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1658604_7	UniRef90	UniRef90_A0A099I3D0	Methyltransferase	NA
UHGV-1658604_7	eggNOG-mapper	742741.HMPREF9475_02383	ParB-like nuclease domain	NA
UHGV-1658604_7	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1658604_7	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1658604_7	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1658604_7	COG	COG0863	DNA modification methylase	NA
UHGV-1658604_7	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-1658604_8	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-1658604_8	UniRef90	UniRef90_A0A3N0I3P2	Virulence	NA
UHGV-1658604_8	eggNOG-mapper	742741.HMPREF9475_02382	NA	NA
UHGV-1658604_8	AcrCatalog	cluster_16277	NA	NA
UHGV-1658604_9	PHROG	phrog_3782	NA	unknown function
UHGV-1658604_9	UniRef90	UniRef90_UPI000551F72F	NA	NA
UHGV-1658604_9	eggNOG-mapper	742741.HMPREF9475_02381	NA	NA
UHGV-1658604_9	Pfam	PF14192	NA	DUF4314
UHGV-1658604_9	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-1658604_9	Structural annotation	PF14192, MF_00754, NF003018, COG0779	NA	NA
UHGV-1658604_10	PHROG	phrog_21141	NA	unknown function
UHGV-1658604_10	UniRef90	UniRef90_A0A0D0SC67	TWA4_scaffold00001, whole genome shotgun sequence	NA
UHGV-1658604_10	eggNOG-mapper	742741.HMPREF9475_02379	NA	NA
UHGV-1658604_10	AcrCatalog	cluster_5293	NA	NA
UHGV-1658604_11	PHROG	phrog_4709	NA	unknown function
UHGV-1658604_11	eggNOG-mapper	742741.HMPREF9475_02378	NA	NA
UHGV-1658604_11	AcrCatalog	cluster_3300	NA	NA
UHGV-1658604_12	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1658604_12	UniRef90	UniRef90_A0A4S2AAI1	Terminase large subunit	NA
UHGV-1658604_12	eggNOG-mapper	742741.HMPREF9475_02377	Phage Terminase	NA
UHGV-1658604_12	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1658604_12	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1658604_12	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1658604_12	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1658604_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-1658604_13	UniRef90	UniRef90_A0A2T3FP24	Phage portal protein	NA
UHGV-1658604_13	eggNOG-mapper	742741.HMPREF9475_02376	Phage portal protein	NA
UHGV-1658604_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1658604_13	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1658604_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1658604_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1658604_14	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1658604_14	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1658604_14	UniRef90	UniRef90_A0A2T3FP02	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1658604_14	eggNOG-mapper	552396.HMPREF0863_01435	Belongs to the peptidase S14 family	NA
UHGV-1658604_14	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1658604_14	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1658604_14	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1658604_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-1658604_15	UniRef90	UniRef90_A0A2T3FP01	Phage major capsid protein	NA
UHGV-1658604_15	eggNOG-mapper	1265507.KB899637_gene608	capsid protein	NA
UHGV-1658604_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1658604_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1658604_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1658604_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1658604_16	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1658604_16	UniRef90	UniRef90_A0A2T3FP12	AraC family transcriptional regulator	NA
UHGV-1658604_16	eggNOG-mapper	742741.HMPREF9475_02373	Phage gp6-like head-tail connector protein	NA
UHGV-1658604_16	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1658604_16	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1658604_16	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1658604_17	PHROG	phrog_25	head closure Hc1	connector
UHGV-1658604_17	UniRef90	UniRef90_A0A2T3FNX9	Head-tail adaptor protein	NA
UHGV-1658604_17	eggNOG-mapper	742741.HMPREF9475_02372	Phage head-tail joining protein	NA
UHGV-1658604_17	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1658604_17	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1658604_17	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1658604_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1658604_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1658604_18	UniRef90	UniRef90_UPI0011CB9C6E	HK97 gp10 family phage protein	NA
UHGV-1658604_18	eggNOG-mapper	742741.HMPREF9475_02371	COG NOG18351 non supervised orthologous group	NA
UHGV-1658604_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1658604_18	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1658604_19	PHROG	phrog_78	tail terminator	connector
UHGV-1658604_19	eggNOG-mapper	742741.HMPREF9475_02370	NA	NA
UHGV-1658604_19	Structural annotation	PF20765	NA	NA
UHGV-1658604_20	PHROG	phrog_88	major tail protein	tail
UHGV-1658604_20	UniRef90	UniRef90_A0A2T3FP07	Phage tail protein	NA
UHGV-1658604_20	eggNOG-mapper	742741.HMPREF9475_02369	phage major tail protein, phi13 family	NA
UHGV-1658604_20	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1658604_20	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1658604_21	PHROG	phrog_709	NA	unknown function
UHGV-1658604_21	eggNOG-mapper	742741.HMPREF9475_02368	NA	NA
UHGV-1658604_21	Structural annotation	PF11836	NA	NA
UHGV-1658604_22	PHROG	phrog_3033	NA	unknown function
UHGV-1658604_22	UniRef90	UniRef90_A0A174UN01	Phage-like protein	NA
UHGV-1658604_22	eggNOG-mapper	742741.HMPREF9475_02367	NA	NA
UHGV-1658604_23	PHROG	phrog_888	NA	unknown function
UHGV-1658604_23	UniRef90	UniRef90_A0A3D5L5A7	NA	NA
UHGV-1658604_23	eggNOG-mapper	1246626.BleG1_1193	Short C-terminal domain	NA
UHGV-1658604_23	Pfam	PF14471	NA	DUF4428
UHGV-1658604_23	Structural annotation	PF14471	NA	NA
UHGV-1658604_24	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1658604_24	UniRef90	UniRef90_A0A2T3FP34	Phage tail tape measure protein	NA
UHGV-1658604_24	eggNOG-mapper	742741.HMPREF9475_02364	Phage tail tape measure protein, TP901 family	NA
UHGV-1658604_24	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1658604_24	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-1658604_24	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1658604_24	COG	COG5283	Phage-related tail protein	NA
UHGV-1658604_24	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1658604_25	PHROG	phrog_1194	NA	unknown function
UHGV-1658604_25	eggNOG-mapper	483218.BACPEC_01319	NA	NA
UHGV-1658604_25	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1658604_26	PHROG	phrog_23052	NA	unknown function
UHGV-1658604_26	eggNOG-mapper	483218.BACPEC_01320	NA	NA
UHGV-1658604_26	Structural annotation	PF14879, PF09931, NF033848, TIGR03721, COG3500, COG4935	NA	NA
UHGV-1658604_27	UniRef90	UniRef90_UPI0018994E65	discoidin domain-containing protein	NA
UHGV-1658604_27	eggNOG-mapper	243164.DET1075	NA	NA
UHGV-1658604_28	PHROG	phrog_19291	NA	unknown function
UHGV-1658604_28	eggNOG-mapper	243164.DET1074	NA	NA