UHGV-1784978

Genome information

Genome length 21,077 bps

CDS count 26

Completeness 52.31% (medium-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-1784978
vOTU ID	vOTU-040248
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-4369424
BioSample	SAMEA2738011
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.31% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.96
Jumbo phage	No

Genome content
Genome length	21,077 bps
GC content	40.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	94.92%
Average CDS length	774.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1784978_1	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1784978_1	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1784978_1	UniRef90	UniRef90_A0A0U0KQR3	Small terminase	NA
UHGV-1784978_1	eggNOG-mapper	365659.smi_0442	Terminase, small subunit	NA
UHGV-1784978_1	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1784978_1	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1784978_1	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1784978_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1784978_2	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1784978_2	UniRef90	UniRef90_D3H773	Terminase large subunit	NA
UHGV-1784978_2	eggNOG-mapper	365659.smi_0443	Terminase RNAseH like domain	NA
UHGV-1784978_2	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1784978_2	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1784978_2	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1784978_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-1784978_2	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-1784978_2	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1784978_3	PHROG	phrog_64	portal protein	head and packaging
UHGV-1784978_3	UniRef90	UniRef90_A0A0U0KQQ4	Serine protein kinase	NA
UHGV-1784978_3	eggNOG-mapper	365659.smi_0444	Portal protein	NA
UHGV-1784978_3	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1784978_3	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1784978_3	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1784978_4	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-1784978_4	UniRef90	UniRef90_UPI001884CB27	minor capsid protein	NA
UHGV-1784978_4	eggNOG-mapper	365659.smi_0445	Phage Mu protein F like protein	NA
UHGV-1784978_4	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1784978_4	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1784978_4	COG	COG2369	NA	NA
UHGV-1784978_4	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1784978_5	eggNOG-mapper	1095737.HMPREF1110_0928	NA	NA
UHGV-1784978_6	PHROG	phrog_774	NA	unknown function
UHGV-1784978_6	UniRef90	UniRef90_A0A0B7LQN3	NA	NA
UHGV-1784978_6	eggNOG-mapper	1435051.BMOU_0242	Helix-turn-helix domain	NA
UHGV-1784978_6	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1784978_7	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1784978_7	UniRef90	UniRef90_D3H781	Methyl-accepting chemotaxis protein scaffolding protein	NA
UHGV-1784978_7	eggNOG-mapper	365659.smi_0451	Phage minor structural protein GP20	NA
UHGV-1784978_7	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1784978_7	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-1784978_8	PHROG	phrog_422	major head protein	head and packaging
UHGV-1784978_8	UniRef90	UniRef90_D3H782	Main capsid protein Gp34-like protein	NA
UHGV-1784978_8	eggNOG-mapper	365659.smi_0452	NA	NA
UHGV-1784978_8	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1784978_9	PHROG	phrog_1378	NA	unknown function
UHGV-1784978_9	eggNOG-mapper	1158602.I590_02566	NA	NA
UHGV-1784978_10	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1784978_10	UniRef90	UniRef90_UPI0018C4DE63	phage head-tail connector protein	NA
UHGV-1784978_10	eggNOG-mapper	1347368.HG964404_gene4991	NA	NA
UHGV-1784978_11	PHROG	phrog_615	head-tail adaptor	connector
UHGV-1784978_11	eggNOG-mapper	365659.smi_0455	NA	NA
UHGV-1784978_11	Structural annotation	PF12206, COG5614	NA	NA
UHGV-1784978_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1784978_12	UniRef90	UniRef90_D3H786	Prophage pi2 protein	NA
UHGV-1784978_12	eggNOG-mapper	365659.smi_0456	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1784978_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1784978_12	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1784978_13	PHROG	phrog_525	NA	unknown function
UHGV-1784978_13	eggNOG-mapper	1430331.EP10_10390	NA	NA
UHGV-1784978_13	Pfam	PF20765	NA	DUF6838
UHGV-1784978_13	Structural annotation	PF20765	NA	NA
UHGV-1784978_14	PHROG	phrog_966	NA	unknown function
UHGV-1784978_15	PHROG	phrog_279	tail sheath	tail
UHGV-1784978_15	UniRef90	UniRef90_A0A4D6B1L6	XkdK protein	NA
UHGV-1784978_15	eggNOG-mapper	365659.smi_0459	Phage-like element PBSX protein XkdK	NA
UHGV-1784978_15	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1784978_15	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1784978_15	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-1784978_16	PHROG	phrog_365	tail protein	tail
UHGV-1784978_16	UniRef90	UniRef90_A0A0U0KQY4	Core tail protein	NA
UHGV-1784978_16	eggNOG-mapper	365659.smi_0460	Phage tail tube protein	NA
UHGV-1784978_16	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1784978_16	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-1784978_17	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-1784978_17	UniRef90	UniRef90_A0A4R1AUU3	Phage portal protein	NA
UHGV-1784978_17	eggNOG-mapper	365659.smi_0461	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-1784978_17	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1784978_17	Structural annotation	PF08890	NA	NA
UHGV-1784978_18	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-1784978_18	UniRef90	UniRef90_A0A1X1K298	TMP_3 domain-containing protein	NA
UHGV-1784978_18	eggNOG-mapper	365659.smi_0462	tape measure	NA
UHGV-1784978_18	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1784978_18	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1784978_18	COG	COG5281	Phage-related minor tail protein	NA
UHGV-1784978_18	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1784978_19	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1784978_19	PHROG	phrog_380	endolysin	lysis
UHGV-1784978_19	UniRef90	UniRef90_A0A1X1K1Z6	LysM domain-containing protein	NA
UHGV-1784978_19	eggNOG-mapper	365659.smi_0463	protein containing LysM domain	NA
UHGV-1784978_19	Pfam	PF01476	LysM domain	LysM
UHGV-1784978_19	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-1784978_19	Structural annotation	PF21821, MF_02014, TIGR02126, NF010723, COG3499	NA	NA
UHGV-1784978_20	PHROG	phrog_400	tail protein	tail
UHGV-1784978_20	UniRef90	UniRef90_M1MSK3	Phage-like element PBSX protein XkdQ	NA
UHGV-1784978_20	eggNOG-mapper	365659.smi_0464	Phage-like element PBSX protein XkdQ	NA
UHGV-1784978_20	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-1784978_20	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1784978_21	Pfam	PF10844	NA	DUF2577
UHGV-1784978_22	PHROG	phrog_120	baseplate protein	tail
UHGV-1784978_22	UniRef90	UniRef90_A0A139PU35	Phage-like element PBSX protein xkdS	NA
UHGV-1784978_22	eggNOG-mapper	365659.smi_0466	NA	NA
UHGV-1784978_22	Pfam	PF10934	NA	DUF2634
UHGV-1784978_22	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-1784978_22	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-1784978_23	PHROG	phrog_6	baseplate protein	tail
UHGV-1784978_23	UniRef90	UniRef90_A0A1X1JTH8	Baseplate_J domain-containing protein	NA
UHGV-1784978_23	eggNOG-mapper	365659.smi_0467	Baseplate J-like protein	NA
UHGV-1784978_23	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1784978_23	COG	COG3299	NA	NA
UHGV-1784978_23	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1784978_24	PHROG	phrog_521	tail protein	tail
UHGV-1784978_24	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-1784978_25	PHROG	phrog_25620	tail collar fiber protein	tail
UHGV-1784978_25	UniRef90	UniRef90_UPI00178CFDB8	pyocin knob domain-containing protein	NA
UHGV-1784978_25	eggNOG-mapper	365659.smi_0469	NA	NA
UHGV-1784978_26	PHROG	phrog_1554	NA	unknown function
UHGV-1784978_26	eggNOG-mapper	1095737.HMPREF1110_1749	NA	NA
UHGV-1784978_26	Structural annotation	PF07104	NA	NA