UHGV-1859579

Genome information

Genome length 40,483 bps

CDS count 61

Completeness 99.90% (high-quality)

geNomad score 0.9555

Prediction confidence Confident

Genome information
Genome ID	UHGV-1859579
vOTU ID	vOTU-068675
vOTU representative	Yes
Source dataset	GFD
Original genome ID	GFD_10.5_NODE_22_length_99556_cov_12.892725
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9555
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.07
Jumbo phage	No

Genome content
Genome length	40,483 bps
GC content	44.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	89.96%
Average CDS length	600.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1859579_1	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1859579_1	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1859579_1	UniRef90	UniRef90_R6I350	Replicative DNA helicase	NA
UHGV-1859579_1	eggNOG-mapper	1244869.H261_06936	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-1859579_1	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1859579_1	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1859579_1	NCBIFam	NF006606.0	replicative DNA helicase	NA
UHGV-1859579_1	COG	COG0305	Replicative DNA helicase	NA
UHGV-1859579_1	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1859579_2	KOfam	K02902	RP-L28, MRPL28, rpmB; large subunit ribosomal protein L28	NA
UHGV-1859579_2	UniRef90	UniRef90_R6HV85	50S ribosomal protein L28	NA
UHGV-1859579_2	eggNOG-mapper	412597.AEPN01000004_gene3184	Belongs to the bacterial ribosomal protein bL28 family	NA
UHGV-1859579_2	Pfam	PF00830	Ribosomal L28 family	Ribosomal_L28
UHGV-1859579_2	NCBIFam	TIGR00009.1	50S ribosomal protein L28	NA
UHGV-1859579_2	COG	COG0227	Ribosomal protein L28	NA
UHGV-1859579_2	HAMAP	MF_00373	Large ribosomal subunit protein bL28 [rpmB]	NA
UHGV-1859579_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1859579_3	PHROG	phrog_95	integrase	integration and excision
UHGV-1859579_3	UniRef90	UniRef90_A0A356F6B9	Recombinase domain-containing protein (Fragment)	NA
UHGV-1859579_3	eggNOG-mapper	1437425.CSEC_0908	Resolvase, N terminal domain	NA
UHGV-1859579_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1859579_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-1859579_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1859579_3	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-1859579_7	PHROG	phrog_98	NA	unknown function
UHGV-1859579_7	UniRef90	UniRef90_A0A843H253	YopX domain-containing protein	NA
UHGV-1859579_7	eggNOG-mapper	220668.lp_0653	YopX protein	NA
UHGV-1859579_7	Pfam	PF09643	YopX protein	YopX
UHGV-1859579_7	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1859579_7	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1859579_10	Structural annotation	PF13973, MF_01194, NF010729, COG4873	NA	NA
UHGV-1859579_11	PHROG	phrog_625	NA	unknown function
UHGV-1859579_11	UniRef90	UniRef90_A0A7W4HGB8	ASCH domain-containing protein	NA
UHGV-1859579_11	Structural annotation	PF12961, MF_00684, COG4043	NA	NA
UHGV-1859579_12	Structural annotation	PF11195	NA	NA
UHGV-1859579_18	Pfam	PF07603	NA	DUF1566
UHGV-1859579_18	Structural annotation	PF07603, TIGR02145	NA	NA
UHGV-1859579_19	eggNOG-mapper	929558.SMGD1_2056	NA	NA
UHGV-1859579_19	Structural annotation	PF09499, COG4998	NA	NA
UHGV-1859579_21	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1859579_21	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1859579_21	UniRef90	UniRef90_A0A3D5BAV1	Peptidase_S24 domain-containing protein	NA
UHGV-1859579_21	eggNOG-mapper	983920.Y88_1044	Transcriptional regulator	NA
UHGV-1859579_21	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1859579_21	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1859579_21	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-1859579_22	UniRef90	UniRef90_A0A7X6BGZ5	2,4-dienoyl-CoA reductase-like NADH-dependent reductase (Old Yellow Enzyme family)	NA
UHGV-1859579_22	eggNOG-mapper	745310.G432_14515	NA	NA
UHGV-1859579_22	Structural annotation	PF02376, NF040507, COG4800	NA	NA
UHGV-1859579_23	PHROG	phrog_799	DNA methyltransferase	other
UHGV-1859579_23	UniRef90	UniRef90_UPI0007D00A58	class I SAM-dependent methyltransferase	NA
UHGV-1859579_23	eggNOG-mapper	1244869.H261_03308	DNA restriction-modification system	NA
UHGV-1859579_23	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-1859579_23	Structural annotation	PF19587, MF_01872, NF011489, COG0286	NA	NA
UHGV-1859579_24	eggNOG-mapper	1137281.D778_01182	NA	NA
UHGV-1859579_24	COG	COG0515	Serine/threonine protein kinase	NA
UHGV-1859579_24	Structural annotation	PF07603, TIGR02145	NA	NA
UHGV-1859579_25	PHROG	phrog_4212	NA	unknown function
UHGV-1859579_25	UniRef90	UniRef90_R6I612	UPF0335 protein BN570_00055	NA
UHGV-1859579_25	eggNOG-mapper	331869.BAL199_16788	NA	NA
UHGV-1859579_25	Pfam	PF10073	GapR-like, DNA-binding domain	GapR_DNA-bd
UHGV-1859579_25	NCBIFam	NF010247.0	hypothetical protein	NA
UHGV-1859579_25	COG	COG3750	NA	NA
UHGV-1859579_25	HAMAP	MF_00797	UPF0335 protein	NA
UHGV-1859579_26	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1859579_26	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1859579_26	UniRef90	UniRef90_A0A1Z9PWF4	Cytosine-specific methyltransferase	NA
UHGV-1859579_26	eggNOG-mapper	1127692.HMPREF9075_02379	C-5 cytosine-specific DNA methylase	NA
UHGV-1859579_26	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1859579_26	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1859579_26	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1859579_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1859579_26	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-1859579_30	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1859579_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1859579_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1859579_31	UniRef90	UniRef90_A0A1Q6UAA3	Terminase_3 domain-containing protein	NA
UHGV-1859579_31	eggNOG-mapper	546268.NEISUBOT_05161	Terminase RNAseH like domain	NA
UHGV-1859579_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1859579_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1859579_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-1859579_31	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1859579_32	KOfam	K04078	groES, HSPE1; chaperonin GroES	NA
UHGV-1859579_32	PHROG	phrog_3188	co-chaperonin GroES	other
UHGV-1859579_32	UniRef90	UniRef90_A0A3D5BCW9	10 kDa chaperonin	NA
UHGV-1859579_32	eggNOG-mapper	32057.KB217478_gene3412	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter	NA
UHGV-1859579_32	Pfam	PF00166	Chaperonin 10 Kd subunit	Cpn10
UHGV-1859579_32	COG	COG0234	Co-chaperonin GroES (HSP10)	NA
UHGV-1859579_32	Structural annotation	PF00166, MF_00580, NF001531, COG0234	NA	NA
UHGV-1859579_33	PHROG	phrog_12082	portal protein	head and packaging
UHGV-1859579_33	UniRef90	UniRef90_UPI001E3B6A58	molecular chaperone	NA
UHGV-1859579_33	eggNOG-mapper	156889.Mmc1_1012	Band 7 protein	NA
UHGV-1859579_33	COG	COG2268	NA	NA
UHGV-1859579_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1859579_35	eggNOG-mapper	1041142.ATTP01000021_gene185	NA	NA
UHGV-1859579_36	PHROG	phrog_9953	major head protein	head and packaging
UHGV-1859579_36	UniRef90	UniRef90_A0A3D5BA26	Phage major capsid protein	NA
UHGV-1859579_36	eggNOG-mapper	156889.Mmc1_1716	NA	NA
UHGV-1859579_36	NCBIFam	NF033394.1	phage major capsid protein	NA
UHGV-1859579_36	Structural annotation	PF17236, MF_04133, NF033394, COG4653	NA	NA
UHGV-1859579_37	PHROG	phrog_20268	NA	unknown function
UHGV-1859579_38	PHROG	phrog_6013	tail protein	tail
UHGV-1859579_38	eggNOG-mapper	156889.Mmc1_1719	NA	NA
UHGV-1859579_38	Structural annotation	PF20387	NA	NA
UHGV-1859579_39	PHROG	phrog_5107	amidase	lysis
UHGV-1859579_39	eggNOG-mapper	156889.Mmc1_1720	NA	NA
UHGV-1859579_39	Structural annotation	PF11134, MF_03037, TIGR04312, COG5276	NA	NA
UHGV-1859579_40	KOfam	K03790	rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]	NA
UHGV-1859579_40	PHROG	phrog_4470	acyl-CoA N-acyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-1859579_40	UniRef90	UniRef90_A0A5C7Q0D9	N-acetyltransferase	NA
UHGV-1859579_40	eggNOG-mapper	1227352.C173_02954	Acetyltransferase (GNAT) domain	NA
UHGV-1859579_40	COG	COG1670	Protein N-acetyltransferase, RimJ/RimL family	NA
UHGV-1859579_40	Structural annotation	PF11039, MF_02210, NF011709, COG1670	NA	NA
UHGV-1859579_41	PHROG	phrog_6121	virion structural protein	head and packaging
UHGV-1859579_41	UniRef90	UniRef90_A0A1Q6U9C7	Peptidase S74 domain-containing protein	NA
UHGV-1859579_41	eggNOG-mapper	1526550.A0A088FAP6_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-1859579_41	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1859579_43	PHROG	phrog_5880	NA	unknown function
UHGV-1859579_43	eggNOG-mapper	223283.PSPTO_5346	NA	NA
UHGV-1859579_44	KOfam	K15359	hspA; 6-hydroxy-3-succinoylpyridine 3-monooxygenase [EC:1.14.13.163]	NA
UHGV-1859579_44	PHROG	phrog_7929	NA	unknown function
UHGV-1859579_44	UniRef90	UniRef90_A0A420Z647	NYN domain-containing protein	NA
UHGV-1859579_44	eggNOG-mapper	526224.Bmur_1576	NYN domain	NA
UHGV-1859579_44	Pfam	PF01936	NYN domain	NYN
UHGV-1859579_44	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-1859579_44	Structural annotation	PF01936, MF_04140, TIGR00288, COG1432	NA	NA
UHGV-1859579_47	PHROG	phrog_1084	NA	unknown function
UHGV-1859579_47	UniRef90	UniRef90_A0A3D5BBX6	BppU_N domain-containing protein	NA
UHGV-1859579_47	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1859579_47	Structural annotation	PF10651, NF032891, COG5456	NA	NA
UHGV-1859579_48	UniRef90	UniRef90_A0A843HM80	NA	NA
UHGV-1859579_50	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-1859579_50	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-1859579_56	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-1859579_56	PHROG	phrog_7	endolysin	lysis
UHGV-1859579_56	UniRef90	UniRef90_A0A843GYX1	Lysozyme	NA
UHGV-1859579_56	eggNOG-mapper	459349.CLOAM0215	cytolysis by virus of host cell	NA
UHGV-1859579_56	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-1859579_56	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-1859579_56	Structural annotation	PF00959, MF_04136, COG3772	NA	NA
UHGV-1859579_61	KOfam	K01867	WARS, trpS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]	NA
UHGV-1859579_61	PHROG	phrog_37857	NA	unknown function
UHGV-1859579_61	UniRef90	UniRef90_R6I6B5	Tryptophan--tRNA ligase	NA
UHGV-1859579_61	eggNOG-mapper	457421.CBFG_05415	tRNA synthetases class I (W and Y)	NA
UHGV-1859579_61	Pfam	PF00579	tRNA synthetases class I (W and Y)	tRNA-synt_1b
UHGV-1859579_61	NCBIFam	TIGR00233.1	tryptophan--tRNA ligase	NA
UHGV-1859579_61	COG	COG0180	Tryptophanyl-tRNA synthetase	NA
UHGV-1859579_61	Structural annotation	PF00579, MF_00140_B, NF008922, COG0180	NA	NA