UHGV-1867883

Genome information

Genome length 36,748 bps

CDS count 63

Completeness 97.16% (high-quality)

geNomad score 0.9509

Prediction confidence Confident

Genome information
Genome ID	UHGV-1867883
vOTU ID	vOTU-071140
vOTU representative	Yes
Source dataset	GFD
Original genome ID	GFD_11.3_NODE_101_length_36748_cov_10.900090
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.16% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9509
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.68
Jumbo phage	No

Genome content
Genome length	36,748 bps
GC content	34.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	92.37%
Average CDS length	542.76 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1867883_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1867883_1	UniRef90	UniRef90_A0A3E3EGW1	HNH endonuclease	NA
UHGV-1867883_1	eggNOG-mapper	926561.KB900623_gene763	HNH nucleases	NA
UHGV-1867883_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1867883_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1867883_2	Structural annotation	PF04545, PF01920, TIGR01636	NA	NA
UHGV-1867883_4	PHROG	phrog_1828	NA	unknown function
UHGV-1867883_4	eggNOG-mapper	1450694.BTS2_0549	NA	NA
UHGV-1867883_6	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1867883_6	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1867883_6	UniRef90	UniRef90_G9R103	SF4 helicase domain-containing protein	NA
UHGV-1867883_6	eggNOG-mapper	1232446.BAIE02000002_gene817	Participates in initiation and elongation during chromosome replication	NA
UHGV-1867883_6	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1867883_6	COG	COG0305	Replicative DNA helicase	NA
UHGV-1867883_6	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1867883_7	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1867883_7	UniRef90	UniRef90_UPI000497F8A6	helix-turn-helix domain-containing protein	NA
UHGV-1867883_7	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-1867883_7	Structural annotation	PF01978, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-1867883_8	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1867883_8	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-1867883_8	eggNOG-mapper	1232446.BAIE02000002_gene815	NA	NA
UHGV-1867883_8	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-1867883_9	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1867883_9	UniRef90	UniRef90_A0A3E3EG87	SAM-dependent methyltransferase	NA
UHGV-1867883_9	eggNOG-mapper	1232446.BAIE02000011_gene1614	methyltransferase	NA
UHGV-1867883_9	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-1867883_9	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-1867883_9	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-1867883_9	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-1867883_13	eggNOG-mapper	1232446.BAIE02000011_gene1618	NA	NA
UHGV-1867883_15	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1867883_15	PHROG	phrog_216	integrase	integration and excision
UHGV-1867883_15	UniRef90	UniRef90_G9R0Z2	Tyr recombinase domain-containing protein	NA
UHGV-1867883_15	eggNOG-mapper	1232446.BAIE02000011_gene1620	Integrase	NA
UHGV-1867883_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1867883_15	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1867883_15	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-1867883_16	Structural annotation	PF13463, MF_01909, NF033788, COG1846	NA	NA
UHGV-1867883_20	PHROG	phrog_8470	NA	unknown function
UHGV-1867883_20	UniRef90	UniRef90_UPI000495B0A2	PcfJ domain-containing protein	NA
UHGV-1867883_20	eggNOG-mapper	1232446.BAIE02000002_gene802	PcfJ-like protein	NA
UHGV-1867883_20	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1867883_20	Structural annotation	PF14284, NF008072	NA	NA
UHGV-1867883_21	PHROG	phrog_7445	NA	unknown function
UHGV-1867883_21	UniRef90	UniRef90_UPI00189C8A62	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-1867883_21	eggNOG-mapper	1268240.ATFI01000007_gene436	PcfK-like protein	NA
UHGV-1867883_21	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-1867883_21	Structural annotation	PF14058	NA	NA
UHGV-1867883_25	PHROG	phrog_6996	NA	unknown function
UHGV-1867883_29	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1867883_29	UniRef90	UniRef90_UPI001D08DCF8	ORF6C domain-containing protein	NA
UHGV-1867883_29	eggNOG-mapper	1232446.BAIE02000011_gene1630	ORF6C domain	NA
UHGV-1867883_29	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-1867883_29	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1867883_29	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1867883_29	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-1867883_33	PHROG	phrog_9976	anti-repressor	transcription regulation
UHGV-1867883_33	UniRef90	UniRef90_A0A496NQ10	Phage repressor protein	NA
UHGV-1867883_33	eggNOG-mapper	1449050.JNLE01000005_gene3959	BRO family, N-terminal domain	NA
UHGV-1867883_33	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1867883_33	COG	COG3617	Prophage antirepressor	NA
UHGV-1867883_33	Structural annotation	PF02498, NF008573, COG3617	NA	NA
UHGV-1867883_34	UniRef90	UniRef90_R9QLK3	Cro-like repressor	NA
UHGV-1867883_34	eggNOG-mapper	1229751.R9QLK3_9CAUD	NA	NA
UHGV-1867883_34	Pfam	PF05339	NA	DUF739
UHGV-1867883_34	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-1867883_35	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1867883_35	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1867883_35	UniRef90	UniRef90_N9XIH7	HTH cro/C1-type domain-containing protein	NA
UHGV-1867883_35	eggNOG-mapper	469604.HMPREF0946_01928	Helix-turn-helix XRE-family like proteins	NA
UHGV-1867883_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1867883_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1867883_36	KOfam	K14059	int; integrase	NA
UHGV-1867883_36	PHROG	phrog_1	integrase	integration and excision
UHGV-1867883_36	UniRef90	UniRef90_UPI000E4CB1B1	site-specific integrase	NA
UHGV-1867883_36	eggNOG-mapper	1232446.BAIE02000011_gene1633	Site-specific recombinase, phage integrase family	NA
UHGV-1867883_36	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1867883_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1867883_36	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1867883_36	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1867883_38	eggNOG-mapper	349123.Lreu23DRAFT_4261	domain, Protein	NA
UHGV-1867883_38	COG	COG2849	Antitoxin component YwqK of the YwqJK toxin-antitoxin module	NA
UHGV-1867883_41	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1867883_41	PHROG	phrog_3088	amidase	lysis
UHGV-1867883_41	UniRef90	UniRef90_A0A3E3AF17	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1867883_41	eggNOG-mapper	1232446.BAIE02000094_gene1162	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-1867883_41	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1867883_41	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1867883_41	Structural annotation	PF01510, PF18342, MF_04111, NF008758, NF040670, COG5632	NA	NA
UHGV-1867883_42	PHROG	phrog_199	holin	lysis
UHGV-1867883_42	UniRef90	UniRef90_UPI000E414CC9	phage holin family protein	NA
UHGV-1867883_42	eggNOG-mapper	469596.HMPREF9488_01337	Bacteriophage holin family	NA
UHGV-1867883_42	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1867883_42	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1867883_42	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1867883_42	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1867883_43	Structural annotation	NF040910	NA	NA
UHGV-1867883_44	UniRef90	UniRef90_R7KBG5	Conserved domain protein	NA
UHGV-1867883_45	PHROG	phrog_24267	NA	unknown function
UHGV-1867883_45	UniRef90	UniRef90_A0A173T301	Phage-related holin (Lysis protein)	NA
UHGV-1867883_45	eggNOG-mapper	411468.CLOSCI_00188	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-1867883_45	COG	COG4675	Phage tail collar domain	NA
UHGV-1867883_46	PHROG	phrog_38707	NA	unknown function
UHGV-1867883_46	eggNOG-mapper	537007.BLAHAN_05239	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1867883_46	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1867883_48	eggNOG-mapper	999413.HMPREF1094_01998	NA	NA
UHGV-1867883_49	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1867883_49	UniRef90	UniRef90_A0A3E3EG68	Peptidase S74 domain-containing protein	NA
UHGV-1867883_49	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-1867883_49	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-1867883_49	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1867883_49	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1867883_49	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1867883_49	COG	COG4926	Phage-related protein	NA
UHGV-1867883_49	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-1867883_50	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1867883_50	UniRef90	UniRef90_A0A3E3EI44	Phage tail protein	NA
UHGV-1867883_50	eggNOG-mapper	999413.HMPREF1094_02000	phage tail	NA
UHGV-1867883_50	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1867883_50	COG	COG4722	Phage-related protein YomH	NA
UHGV-1867883_50	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1867883_51	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1867883_51	UniRef90	UniRef90_A0A3E3EH06	Phage tail tape measure protein	NA
UHGV-1867883_51	eggNOG-mapper	903814.ELI_1307	Phage-related minor tail protein	NA
UHGV-1867883_51	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1867883_51	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1867883_51	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-1867883_51	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1867883_52	PHROG	phrog_3033	NA	unknown function
UHGV-1867883_53	PHROG	phrog_709	NA	unknown function
UHGV-1867883_53	eggNOG-mapper	1392487.JIAD01000001_gene514	NA	NA
UHGV-1867883_53	Structural annotation	PF11836	NA	NA
UHGV-1867883_54	PHROG	phrog_88	major tail protein	tail
UHGV-1867883_54	UniRef90	UniRef90_A0A3E3EG64	Phage tail protein	NA
UHGV-1867883_54	eggNOG-mapper	1235792.C808_00091	phage major tail protein, phi13 family	NA
UHGV-1867883_54	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1867883_54	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1867883_55	UniRef90	UniRef90_A0A374RUJ8	HK97 gp10 family phage protein	NA
UHGV-1867883_55	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-1867883_55	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1867883_55	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1867883_56	PHROG	phrog_78	tail terminator	connector
UHGV-1867883_56	eggNOG-mapper	476272.RUMHYD_01476	COG NOG18352 non supervised orthologous group	NA
UHGV-1867883_56	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-1867883_57	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-1867883_57	Structural annotation	PF16467, MF_01457, TIGR01563, COG5614	NA	NA
UHGV-1867883_58	PHROG	phrog_749	NA	unknown function
UHGV-1867883_58	eggNOG-mapper	1415774.U728_1251	NA	NA
UHGV-1867883_59	PHROG	phrog_10	major head protein	head and packaging
UHGV-1867883_59	UniRef90	UniRef90_A0A3E3EGM4	Phage major capsid protein	NA
UHGV-1867883_59	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-1867883_59	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1867883_59	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1867883_59	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1867883_59	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1867883_60	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1867883_60	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1867883_60	UniRef90	UniRef90_A0A3E3EG77	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1867883_60	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-1867883_60	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1867883_60	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1867883_60	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1867883_61	PHROG	phrog_12	portal protein	head and packaging
UHGV-1867883_61	UniRef90	UniRef90_A0A3E3EI59	Phage portal protein	NA
UHGV-1867883_61	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-1867883_61	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1867883_61	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1867883_61	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1867883_61	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1867883_62	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1867883_62	UniRef90	UniRef90_A0A3E3EH16	Terminase	NA
UHGV-1867883_62	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-1867883_62	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1867883_62	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1867883_62	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1867883_62	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1867883_63	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1867883_63	UniRef90	UniRef90_A0A3E3EG90	RNA polymerase subunit sigma-70	NA
UHGV-1867883_63	eggNOG-mapper	864178.E2ELI1_9CAUD	Phage terminase, small subunit	NA
UHGV-1867883_63	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1867883_63	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA