UHGV-1871699

Genome information

Genome length 38,891 bps

CDS count 49

Completeness 67.75% (medium-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-1871699
vOTU ID	vOTU-028574
vOTU representative	Yes
Source dataset	DEVoC
Original genome ID	ViralSequence507
BioSample	SAMN18794244
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.75% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.17
Jumbo phage	No

Genome content
Genome length	38,891 bps
GC content	30.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	91.23%
Average CDS length	726.49 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1871699_2	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1871699_2	UniRef90	UniRef90_A0A7X2P7N6	Phage terminase large subunit	NA
UHGV-1871699_2	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-1871699_2	COG	COG5410	NA	NA
UHGV-1871699_2	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1871699_3	PHROG	phrog_64	portal protein	head and packaging
UHGV-1871699_3	UniRef90	UniRef90_A0A3D0LYK0	Phage portal protein	NA
UHGV-1871699_3	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1871699_3	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1871699_3	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1871699_4	Structural annotation	PF14265	NA	NA
UHGV-1871699_6	PHROG	phrog_29	major head protein	head and packaging
UHGV-1871699_6	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-1871699_6	eggNOG-mapper	1158612.I580_01912	Phage major capsid protein E	NA
UHGV-1871699_6	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1871699_6	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1871699_9	UniRef90	UniRef90_A0A7C7ERG0	DNA-packaging protein	NA
UHGV-1871699_10	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1871699_11	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-1871699_12	Structural annotation	PF05657	NA	NA
UHGV-1871699_13	PHROG	phrog_158	major tail protein	tail
UHGV-1871699_13	eggNOG-mapper	469596.HMPREF9488_01310	NA	NA
UHGV-1871699_13	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1871699_14	UniRef90	UniRef90_A0A847W2H3	NA	NA
UHGV-1871699_14	eggNOG-mapper	1121333.JMLH01000047_gene1012	NA	NA
UHGV-1871699_14	Pfam	PF16478	NA	DUF5055
UHGV-1871699_14	Structural annotation	PF16478	NA	NA
UHGV-1871699_15	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-1871699_16	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1871699_16	COG	COG5412	Phage-related protein	NA
UHGV-1871699_17	PHROG	phrog_1194	NA	unknown function
UHGV-1871699_17	eggNOG-mapper	483218.BACPEC_01144	NA	NA
UHGV-1871699_17	Pfam	PF20458	NA	DUF6711
UHGV-1871699_17	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1871699_18	PHROG	phrog_6616	tail protein	tail
UHGV-1871699_18	eggNOG-mapper	658659.HMPREF0983_03295	NA	NA
UHGV-1871699_19	PHROG	phrog_372	tail protein	tail
UHGV-1871699_19	UniRef90	UniRef90_R7FHU8	Tail protein	NA
UHGV-1871699_19	Pfam	PF05895	NA	DUF859
UHGV-1871699_19	COG	COG4675	Phage tail collar domain	NA
UHGV-1871699_20	eggNOG-mapper	665956.HMPREF1032_03261	NA	NA
UHGV-1871699_21	KOfam	K10268	FBXL2_20; F-box and leucine-rich repeat protein 2/20	NA
UHGV-1871699_21	PHROG	phrog_9915	NA	unknown function
UHGV-1871699_21	Pfam	PF03382	NA	DUF285
UHGV-1871699_21	Pfam	PF13855	Leucine rich repeat	LRR_8
UHGV-1871699_21	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-1871699_21	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-1871699_23	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1871699_23	PHROG	phrog_20388	endolysin	lysis
UHGV-1871699_23	UniRef90	UniRef90_A0A2I0N350	N-acetylmuramoyl-L-alanine amidase domain protein	NA
UHGV-1871699_23	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1871699_23	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1871699_23	Pfam	PF01476	LysM domain	LysM
UHGV-1871699_23	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1871699_25	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-1871699_29	UniRef90	UniRef90_R7BK61	NUMOD1 domain-containing protein	NA
UHGV-1871699_29	eggNOG-mapper	1499689.CCNN01000004_gene307	Intron-encoded nuclease repeat 2	NA
UHGV-1871699_32	Structural annotation	PF05037, NF005674	NA	NA
UHGV-1871699_33	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1871699_33	UniRef90	UniRef90_A0A7C6W834	YqaJ-like viral recombinase	NA
UHGV-1871699_33	eggNOG-mapper	1121866.AUGK01000003_gene1405	YqaJ viral recombinase family	NA
UHGV-1871699_33	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1871699_33	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-1871699_35	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1871699_35	UniRef90	UniRef90_A0A6G7WZS2	DNA_pol_B domain-containing protein	NA
UHGV-1871699_35	eggNOG-mapper	1301100.HG529312_gene421	DNA polymerase elongation subunit (Family B)	NA
UHGV-1871699_35	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-1871699_35	Structural annotation	PF04404, PF00476, NF004418, TIGR00607, COG5055	NA	NA
UHGV-1871699_37	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1871699_37	UniRef90	UniRef90_UPI001C2BB323	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-1871699_37	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-1871699_37	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1871699_37	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-1871699_38	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1871699_38	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-1871699_38	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-1871699_39	PHROG	phrog_1233	NA	unknown function
UHGV-1871699_40	UniRef90	UniRef90_UPI00037A52B9	dual specificity protein phosphatase family protein	NA
UHGV-1871699_40	eggNOG-mapper	1122990.BAJH01000013_gene1724	phosphatase	NA
UHGV-1871699_40	COG	COG2453	Protein-tyrosine phosphatase	NA
UHGV-1871699_43	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-1871699_45	PHROG	phrog_695	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-1871699_45	UniRef90	UniRef90_UPI001EE1B367	bifunctional DNA primase/polymerase	NA
UHGV-1871699_45	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-1871699_45	Structural annotation	PF09250, COG4983	NA	NA
UHGV-1871699_46	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1871699_46	UniRef90	UniRef90_UPI0018AB7B79	NUMOD4 domain-containing protein	NA
UHGV-1871699_46	eggNOG-mapper	1423814.HMPREF0549_1779	NUMOD4 motif	NA
UHGV-1871699_46	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1871699_46	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1871699_46	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1871699_46	Structural annotation	PF07463, PF07453	NA	NA
UHGV-1871699_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1871699_49	eggNOG-mapper	1321782.HMPREF1986_02253	Virulence-associated protein E	NA
UHGV-1871699_49	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA