UHGV-1875842

Genome information

Genome length 27,333 bps

CDS count 41

Completeness 82.75% (medium-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-1875842
vOTU ID	vOTU-038044
vOTU representative	Yes
Source dataset	DEVoC
Original genome ID	ViralSequence826
BioSample	SAMN18794212
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.75% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.17
Jumbo phage	No

Genome content
Genome length	27,333 bps
GC content	52.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	92.20%
Average CDS length	621.22 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1875842_1	eggNOG-mapper	1156919.QWC_27991	Flagellar Assembly Protein A	NA
UHGV-1875842_1	COG	COG1315	Flagellar assembly protein FapA, interacts with EIIAGlc	NA
UHGV-1875842_2	UniRef90	UniRef90_A0A212JT87	HTH cro/C1-type domain-containing protein	NA
UHGV-1875842_2	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1875842_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1875842_4	UniRef90	UniRef90_UPI0019D590FA	helix-turn-helix domain-containing protein	NA
UHGV-1875842_4	eggNOG-mapper	1196835.A458_06335	Helix-turn-helix domain	NA
UHGV-1875842_4	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1875842_4	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1875842_4	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1875842_5	PHROG	phrog_7115	NA	unknown function
UHGV-1875842_5	UniRef90	UniRef90_UPI00189A2A6A	PH domain-containing protein	NA
UHGV-1875842_5	eggNOG-mapper	1410668.JNKC01000008_gene2722	Bacterial PH domain	NA
UHGV-1875842_5	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-1875842_5	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-1875842_6	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1875842_6	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-1875842_6	UniRef90	UniRef90_A0A416HP92	XRE family transcriptional regulator	NA
UHGV-1875842_6	eggNOG-mapper	349161.Dred_0888	helix-turn-helix	NA
UHGV-1875842_6	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1875842_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1875842_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1875842_6	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1875842_7	Structural annotation	PF09202, MF_01177, TIGR01889, COG5631	NA	NA
UHGV-1875842_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1875842_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1875842_8	UniRef90	UniRef90_A0A3C1K3F5	HTH cro/C1-type domain-containing protein	NA
UHGV-1875842_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1875842_8	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1875842_8	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-1875842_10	KOfam	K14059	int; integrase	NA
UHGV-1875842_10	PHROG	phrog_1	integrase	integration and excision
UHGV-1875842_10	UniRef90	UniRef90_A0A3D0M0M9	Site-specific integrase	NA
UHGV-1875842_10	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-1875842_10	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1875842_10	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1875842_10	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1875842_12	PHROG	phrog_20258	NA	unknown function
UHGV-1875842_12	eggNOG-mapper	665956.HMPREF1032_00100	NA	NA
UHGV-1875842_14	eggNOG-mapper	33035.JPJF01000023_gene3222	NA	NA
UHGV-1875842_15	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1875842_15	PHROG	phrog_5182	endolysin	lysis
UHGV-1875842_15	UniRef90	UniRef90_A0A1T4XR68	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1875842_15	eggNOG-mapper	1089553.Tph_c23010	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-1875842_15	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1875842_15	COG	COG1388	LysM repeat	NA
UHGV-1875842_16	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-1875842_16	PHROG	phrog_6320	tail fiber protein	tail
UHGV-1875842_16	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1875842_18	eggNOG-mapper	411461.DORFOR_00724	NA	NA
UHGV-1875842_18	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-1875842_19	PHROG	phrog_32322	NA	unknown function
UHGV-1875842_19	UniRef90	UniRef90_UPI0018A828C6	PF13754 domain-containing protein	NA
UHGV-1875842_19	Pfam	PF13754	NA	Big_3_4
UHGV-1875842_20	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-1875842_20	PHROG	phrog_11157	NA	unknown function
UHGV-1875842_20	UniRef90	UniRef90_UPI000681F570	Ig-like domain-containing protein	NA
UHGV-1875842_20	eggNOG-mapper	476272.RUMHYD_02867	NA	NA
UHGV-1875842_20	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-1875842_20	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-1875842_20	NCBIFam	NF033510.3	Ca2+-stabilized repeat-containing adhesin	NA
UHGV-1875842_20	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-1875842_20	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-1875842_21	PHROG	phrog_2712	tail fiber protein	tail
UHGV-1875842_21	eggNOG-mapper	1499683.CCFF01000017_gene2919	NA	NA
UHGV-1875842_22	eggNOG-mapper	428125.CLOLEP_00173	NA	NA
UHGV-1875842_22	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1875842_23	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1875842_23	UniRef90	UniRef90_A7VNP8	Phage tail tape measure protein, TP901 family	NA
UHGV-1875842_23	eggNOG-mapper	428125.CLOLEP_00174	tail tape measure protein, TP901	NA
UHGV-1875842_23	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1875842_23	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1875842_23	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1875842_24	PHROG	phrog_706	NA	unknown function
UHGV-1875842_24	UniRef90	UniRef90_A7VNQ0	Bacteriophage Gp15 protein	NA
UHGV-1875842_24	eggNOG-mapper	428125.CLOLEP_01787	Bacteriophage Gp15 protein	NA
UHGV-1875842_24	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1875842_24	Structural annotation	PF06854	NA	NA
UHGV-1875842_25	Structural annotation	PF10666	NA	NA
UHGV-1875842_26	PHROG	phrog_820	major tail protein	tail
UHGV-1875842_26	UniRef90	UniRef90_A0A3A6EPU8	S-l_SbsC_C domain-containing protein	NA
UHGV-1875842_26	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-1875842_26	COG	COG5492	NA	NA
UHGV-1875842_26	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1875842_27	PHROG	phrog_913	minor head protein	head and packaging
UHGV-1875842_27	Structural annotation	PF12691	NA	NA
UHGV-1875842_28	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1875842_28	UniRef90	UniRef90_UPI000C857E2C	minor capsid protein	NA
UHGV-1875842_28	eggNOG-mapper	428125.CLOLEP_00180	Minor capsid protein	NA
UHGV-1875842_28	Structural annotation	PF11114	NA	NA
UHGV-1875842_29	UniRef90	UniRef90_UPI001D06E7F2	minor capsid protein	NA
UHGV-1875842_29	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1875842_30	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1875842_30	UniRef90	UniRef90_F5L4I5	Protein gp8	NA
UHGV-1875842_30	eggNOG-mapper	986075.CathTA2_0698	NA	NA
UHGV-1875842_31	PHROG	phrog_422	major head protein	head and packaging
UHGV-1875842_31	UniRef90	UniRef90_A0A316T938	S-l_SbsC_C domain-containing protein	NA
UHGV-1875842_31	eggNOG-mapper	428125.CLOLEP_00183	COG NOG28280 non supervised orthologous group	NA
UHGV-1875842_31	Structural annotation	PF19821, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1875842_33	COG	COG0783	DNA-binding ferritin-like protein (oxidative damage protectant)	NA
UHGV-1875842_33	Structural annotation	PF14530, MF_01441, NF009990, COG0783	NA	NA
UHGV-1875842_35	PHROG	phrog_27009	NA	unknown function
UHGV-1875842_36	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1875842_36	UniRef90	UniRef90_A7VTB0	Phage minor capsid protein 2	NA
UHGV-1875842_36	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-1875842_36	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1875842_36	COG	COG2369	NA	NA
UHGV-1875842_36	Structural annotation	PF06152	NA	NA
UHGV-1875842_37	PHROG	phrog_533	portal protein	head and packaging
UHGV-1875842_37	UniRef90	UniRef90_A7VTB1	Phage minor capsid protein	NA
UHGV-1875842_37	eggNOG-mapper	428125.CLOLEP_01803	NA	NA
UHGV-1875842_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1875842_37	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1875842_37	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1875842_38	PHROG	phrog_16357	NA	unknown function
UHGV-1875842_39	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1875842_39	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1875842_39	UniRef90	UniRef90_A0A497BFY0	Methyltransferase	NA
UHGV-1875842_39	eggNOG-mapper	932678.THERU_07455	DNA methylase	NA
UHGV-1875842_39	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1875842_39	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1875842_39	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1875842_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1875842_40	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1875842_40	UniRef90	UniRef90_A0A3A6EPV3	PBSX family phage terminase large subunit	NA
UHGV-1875842_40	eggNOG-mapper	642492.Clole_0814	Phage terminase, large subunit, PBSX family	NA
UHGV-1875842_40	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1875842_40	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1875842_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-1875842_40	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1875842_41	UniRef90	UniRef90_A0A3A6E886	Helix-turn-helix domain-containing protein	NA
UHGV-1875842_41	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-1875842_41	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-1875842_41	Structural annotation	PF13542	NA	NA