UHGV-1879185

Genome information

vOTU vOTU-020757

Genome length 28,003 bps

CDS count 34

Completeness 61.93% (medium-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-1879185
vOTU ID	vOTU-020757
vOTU representative	Yes
Source dataset	DEVoC
Original genome ID	ViralSequence796
BioSample	SAMN18819170
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.93% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.24
Jumbo phage	No

Genome content
Genome length	28,003 bps
GC content	41.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	90.84%
Average CDS length	748.85 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1879185_1	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-1879185_1	UniRef90	UniRef90_UPI001C0EAFDF	OB-fold putative lipoprotein	NA
UHGV-1879185_1	eggNOG-mapper	1304866.K413DRAFT_0836	tRNA_anti-like	NA
UHGV-1879185_1	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-1879185_1	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-1879185_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1879185_2	PHROG	phrog_95	integrase	integration and excision
UHGV-1879185_2	UniRef90	UniRef90_A0A2V2D7K6	Recombinase family protein	NA
UHGV-1879185_2	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-1879185_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1879185_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-1879185_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1879185_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1879185_2	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1879185_3	PHROG	phrog_9589	endolysin	lysis
UHGV-1879185_3	UniRef90	UniRef90_UPI0009315CF1	SH3 domain-containing protein	NA
UHGV-1879185_3	eggNOG-mapper	476272.RUMHYD_03304	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-1879185_3	Pfam	PF05257	CHAP domain	CHAP
UHGV-1879185_3	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1879185_3	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-1879185_3	Structural annotation	PF08239, PF09953, NF040678, COG3942, COG4991	NA	NA
UHGV-1879185_4	UniRef90	UniRef90_UPI001C0EBDDC	pyocin knob domain-containing protein	NA
UHGV-1879185_5	PHROG	phrog_6616	tail protein	tail
UHGV-1879185_5	UniRef90	UniRef90_A0A2V2D052	Peptidase S74 domain-containing protein	NA
UHGV-1879185_5	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-1879185_5	COG	COG4926	Phage-related protein	NA
UHGV-1879185_5	Structural annotation	PF05113, PF03921, PF13884, NF033848, COG3500	NA	NA
UHGV-1879185_6	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1879185_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1879185_7	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-1879185_7	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-1879185_7	COG	COG1511	NA	NA
UHGV-1879185_7	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1879185_8	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1879185_8	UniRef90	UniRef90_UPI00155E23B1	NUMOD4 domain-containing protein	NA
UHGV-1879185_8	eggNOG-mapper	1206110.L0P6F5_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-1879185_8	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1879185_8	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1879185_8	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1879185_8	Structural annotation	PF07463, PF07453	NA	NA
UHGV-1879185_9	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1879185_9	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-1879185_9	COG	COG1511	NA	NA
UHGV-1879185_9	Structural annotation	PF20155	NA	NA
UHGV-1879185_10	PHROG	phrog_706	NA	unknown function
UHGV-1879185_10	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-1879185_10	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-1879185_10	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1879185_10	Structural annotation	PF06854	NA	NA
UHGV-1879185_11	PHROG	phrog_11299	NA	unknown function
UHGV-1879185_11	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-1879185_11	Structural annotation	PF10666	NA	NA
UHGV-1879185_12	PHROG	phrog_3099	NA	unknown function
UHGV-1879185_12	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-1879185_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1879185_13	PHROG	phrog_3266	tail completion	connector
UHGV-1879185_13	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-1879185_13	Structural annotation	PF12691	NA	NA
UHGV-1879185_14	PHROG	phrog_3366	NA	unknown function
UHGV-1879185_14	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-1879185_14	Structural annotation	PF20536, COG5614	NA	NA
UHGV-1879185_15	PHROG	phrog_18218	NA	unknown function
UHGV-1879185_15	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-1879185_15	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-1879185_15	Structural annotation	PF06946	NA	NA
UHGV-1879185_16	PHROG	phrog_774	NA	unknown function
UHGV-1879185_16	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-1879185_18	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-1879185_18	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-1879185_18	UniRef90	UniRef90_A0A2V2D6Q6	N6_Mtase domain-containing protein	NA
UHGV-1879185_18	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-1879185_18	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-1879185_18	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-1879185_18	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-1879185_18	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-1879185_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1879185_19	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-1879185_20	PHROG	phrog_544	major head protein	head and packaging
UHGV-1879185_20	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-1879185_20	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-1879185_20	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-1879185_20	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1879185_21	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1879185_21	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-1879185_21	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-1879185_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1879185_22	PHROG	phrog_28802	NA	unknown function
UHGV-1879185_22	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-1879185_23	PHROG	phrog_20016	NA	unknown function
UHGV-1879185_23	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1879185_23	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-1879185_23	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1879185_24	PHROG	phrog_16490	NA	unknown function
UHGV-1879185_24	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-1879185_25	PHROG	phrog_22984	NA	unknown function
UHGV-1879185_26	PHROG	phrog_21718	NA	unknown function
UHGV-1879185_26	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-1879185_27	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-1879185_27	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-1879185_27	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-1879185_28	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-1879185_28	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-1879185_29	PHROG	phrog_3754	NA	unknown function
UHGV-1879185_29	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-1879185_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1879185_30	UniRef90	UniRef90_UPI001C0EDE82	phage minor capsid protein	NA
UHGV-1879185_30	eggNOG-mapper	642492.Clole_0816	NA	NA
UHGV-1879185_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1879185_30	COG	COG2369	NA	NA
UHGV-1879185_30	Structural annotation	PF06152	NA	NA
UHGV-1879185_31	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1879185_31	UniRef90	UniRef90_UPI001C0ECC47	minor capsid protein	NA
UHGV-1879185_31	eggNOG-mapper	1449343.JQLQ01000002_gene1329	Minor capsid protein	NA
UHGV-1879185_31	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1879185_31	Structural annotation	PF11114	NA	NA
UHGV-1879185_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-1879185_32	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-1879185_32	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-1879185_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1879185_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1879185_34	PHROG	phrog_18557	terminase large subunit	head and packaging
UHGV-1879185_34	eggNOG-mapper	479437.Elen_2622	Phage terminase, large subunit, PBSX family	NA
UHGV-1879185_34	COG	COG1783	Phage terminase large subunit	NA