UHGV-1883620

Genome information

vOTU vOTU-019364

Genome length 21,859 bps

CDS count 26

Completeness 55.25% (medium-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-1883620
vOTU ID	vOTU-019364
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	2065487011\|mocke_il_velveta_contig_4191
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.13
Jumbo phage	No

Genome content
Genome length	21,859 bps
GC content	48.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	85.63%
Average CDS length	721.62 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1883620_1	PHROG	phrog_1762	NA	unknown function
UHGV-1883620_1	UniRef90	UniRef90_UPI000C6CED59	NA	NA
UHGV-1883620_1	eggNOG-mapper	272943.RSP_6250	NA	NA
UHGV-1883620_1	Pfam	PF11185	NA	DUF2971
UHGV-1883620_3	UniRef90	UniRef90_Q3J215	DDE_Tnp_IS66_C domain-containing protein	NA
UHGV-1883620_3	Pfam	PF13817	IS66 C-terminal element	DDE_Tnp_IS66_C
UHGV-1883620_3	COG	COG4372	NA	NA
UHGV-1883620_4	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1883620_4	UniRef90	UniRef90_Q3J217	Putative Endonuclease	NA
UHGV-1883620_4	eggNOG-mapper	398578.Daci_4092	HNH endonuclease	NA
UHGV-1883620_4	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1883620_4	Structural annotation	PF13392, PF00847	NA	NA
UHGV-1883620_6	PHROG	phrog_12559	terminase small subunit	head and packaging
UHGV-1883620_6	UniRef90	UniRef90_Q63VV1	Putative exported protein	NA
UHGV-1883620_6	eggNOG-mapper	412597.AEPN01000090_gene1283	NA	NA
UHGV-1883620_7	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1883620_7	UniRef90	UniRef90_Q3J220	Phage terminase-like protein, large subunit	NA
UHGV-1883620_7	eggNOG-mapper	272943.RSP_2998	Phage terminase-like protein large subunit	NA
UHGV-1883620_7	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1883620_7	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1883620_7	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1883620_7	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1883620_8	PHROG	phrog_12	portal protein	head and packaging
UHGV-1883620_8	UniRef90	UniRef90_Q3J221	Putative head portal protein	NA
UHGV-1883620_8	eggNOG-mapper	272943.RSP_2997	portal protein	NA
UHGV-1883620_8	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1883620_8	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1883620_8	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1883620_8	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1883620_9	KOfam	K06904	NA	NA
UHGV-1883620_9	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1883620_9	UniRef90	UniRef90_Q3J222	Prohead peptidase	NA
UHGV-1883620_9	eggNOG-mapper	272943.RSP_2996	Caudovirus prohead serine protease	NA
UHGV-1883620_9	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1883620_9	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1883620_9	COG	COG3740	Phage head maturation protease	NA
UHGV-1883620_9	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1883620_10	PHROG	phrog_10	major head protein	head and packaging
UHGV-1883620_10	UniRef90	UniRef90_Q3J223	Putative phage major capsid protein, gp36	NA
UHGV-1883620_10	eggNOG-mapper	272943.RSP_2995	Phage capsid family	NA
UHGV-1883620_10	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1883620_10	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1883620_10	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1883620_11	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1883620_11	UniRef90	UniRef90_Q3J224	Phage-related protein, putative DNA packing	NA
UHGV-1883620_11	eggNOG-mapper	272943.RSP_6247	DNA packaging	NA
UHGV-1883620_11	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1883620_11	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1883620_12	PHROG	phrog_25	head closure Hc1	connector
UHGV-1883620_12	UniRef90	UniRef90_Q3J225	Bacteriophage head-tail adaptor	NA
UHGV-1883620_12	eggNOG-mapper	272943.RSP_6246	head-tail adaptor	NA
UHGV-1883620_12	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1883620_12	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1883620_12	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1883620_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1883620_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1883620_13	UniRef90	UniRef90_Q3J226	Phage protein, HK97 gp10 family	NA
UHGV-1883620_13	eggNOG-mapper	272943.RSP_6245	NA	NA
UHGV-1883620_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1883620_13	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1883620_14	UniRef90	UniRef90_UPI000C6D3109	NA	NA
UHGV-1883620_15	PHROG	phrog_158	major tail protein	tail
UHGV-1883620_15	UniRef90	UniRef90_U5NMQ2	Phage major tail protein 2	NA
UHGV-1883620_15	eggNOG-mapper	272943.RSP_7540	NA	NA
UHGV-1883620_15	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-1883620_16	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1883620_16	UniRef90	UniRef90_Q3J228	Putative endonuclease	NA
UHGV-1883620_16	eggNOG-mapper	272943.RSP_6243	PFAM Pathogenesis-related transcriptional factor and ERF protein	NA
UHGV-1883620_16	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1883620_16	Structural annotation	PF13392, PF00847	NA	NA
UHGV-1883620_20	PHROG	phrog_2854	tail length tape measure protein	tail
UHGV-1883620_20	UniRef90	UniRef90_U3ACV4	Phage tail tape meausure protein, lambda family	NA
UHGV-1883620_20	eggNOG-mapper	272943.RSP_2994	tail tape measure protein	NA
UHGV-1883620_20	COG	COG2911	Autotransporter translocation and assembly protein TamB	NA
UHGV-1883620_20	Structural annotation	MF_04138, TIGR01541, COG5281	NA	NA
UHGV-1883620_21	PHROG	phrog_1302	distal tail protein	tail
UHGV-1883620_21	eggNOG-mapper	1500306.JQLA01000039_gene6532	NA	NA
UHGV-1883620_22	PHROG	phrog_2048	tail protein	tail
UHGV-1883620_22	eggNOG-mapper	1417296.U879_02025	NA	NA
UHGV-1883620_23	PHROG	phrog_2134	NA	unknown function
UHGV-1883620_23	eggNOG-mapper	1054213.HMPREF9946_02239	NA	NA
UHGV-1883620_23	Structural annotation	PF00877, NF008096, COG3738	NA	NA
UHGV-1883620_24	PHROG	phrog_5616	tail fiber protein	tail
UHGV-1883620_24	UniRef90	UniRef90_Q3J233	Phage-tail_3 domain-containing protein	NA
UHGV-1883620_24	eggNOG-mapper	272943.RSP_2990	Putative phage tail protein	NA
UHGV-1883620_24	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-1883620_24	COG	COG4733	Phage-related protein, tail protein J	NA