UHGV-1885467

Genome information

Genome length 32,458 bps

CDS count 42

Completeness 75.66% (medium-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-1885467
vOTU ID	vOTU-041003
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	2065487010\|mocke_il_caa_ctg120017591539\|provirus_123_32580
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.66% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	37
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	79.4
Jumbo phage	No

Genome content
Genome length	32,458 bps
GC content	34.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	89.17%
Average CDS length	691.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1885467_1	PHROG	phrog_258	virulence associated	other
UHGV-1885467_1	UniRef90	UniRef90_UPI0018886610	SAV1978 family virulence-associated passenger protein	NA
UHGV-1885467_1	eggNOG-mapper	1280.SAXN108_2082	Phage Conserved Open Reading Frame 51	NA
UHGV-1885467_1	Pfam	PF06194	Phage Conserved Open Reading Frame 51	Phage_Orf51
UHGV-1885467_2	PHROG	phrog_266	NA	unknown function
UHGV-1885467_2	UniRef90	UniRef90_Q4ZBK5	ORF059	NA
UHGV-1885467_2	eggNOG-mapper	1498220.A0A068A237_9CAUD	NA	NA
UHGV-1885467_2	Pfam	PF06260	NA	DUF1024
UHGV-1885467_2	Structural annotation	PF06260	NA	NA
UHGV-1885467_3	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-1885467_3	UniRef90	UniRef90_A0A411BM68	dUTPase	NA
UHGV-1885467_3	eggNOG-mapper	129009.Q9MBR0_9CAUD	dUTPase	NA
UHGV-1885467_3	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-1885467_3	Structural annotation	PF08761, COG4508	NA	NA
UHGV-1885467_4	PHROG	phrog_278	transcriptional regulator	transcription regulation
UHGV-1885467_4	UniRef90	UniRef90_Q4ZDG3	ORF078	NA
UHGV-1885467_4	eggNOG-mapper	1280.SAXN108_0342	NA	NA
UHGV-1885467_4	Pfam	PF07129	NA	DUF1381
UHGV-1885467_5	PHROG	phrog_1122	NA	unknown function
UHGV-1885467_6	PHROG	phrog_555	NA	unknown function
UHGV-1885467_6	UniRef90	UniRef90_Q4ZA37	ORF070	NA
UHGV-1885467_6	eggNOG-mapper	129009.Q9MBQ9_9CAUD	NA	NA
UHGV-1885467_7	PHROG	phrog_301	secreted protein	other
UHGV-1885467_7	UniRef90	UniRef90_UPI001C4FFFEF	NA	NA
UHGV-1885467_7	eggNOG-mapper	1277672.M9QX07_9CAUD	NA	NA
UHGV-1885467_7	Pfam	PF07509	NA	DUF1523
UHGV-1885467_8	PHROG	phrog_152	RinB-like transcriptional activator	transcription regulation
UHGV-1885467_8	UniRef90	UniRef90_S4V6D6	Transcriptional activator RinB	NA
UHGV-1885467_8	eggNOG-mapper	1280.SAXN108_1938	Transcriptional activator RinB	NA
UHGV-1885467_8	Pfam	PF06116	Transcriptional activator RinB	RinB
UHGV-1885467_8	Structural annotation	PF06116	NA	NA
UHGV-1885467_9	PHROG	phrog_1058	NA	unknown function
UHGV-1885467_9	UniRef90	UniRef90_A0A380GAE8	Putative phi PVL-like protein	NA
UHGV-1885467_9	eggNOG-mapper	1280.SAXN108_1937	NA	NA
UHGV-1885467_10	PHROG	phrog_1595	terminase small subunit	head and packaging
UHGV-1885467_10	UniRef90	UniRef90_A0A0E3XD54	Terminase small subunit	NA
UHGV-1885467_10	eggNOG-mapper	1280.SAXN108_1936	DNA packaging	NA
UHGV-1885467_10	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1885467_10	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1885467_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1885467_11	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1885467_11	UniRef90	UniRef90_M9NTB9	Phage terminase large subunit	NA
UHGV-1885467_11	eggNOG-mapper	320842.Q4ZBZ8_9CAUD	DNA packaging	NA
UHGV-1885467_11	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1885467_11	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1885467_11	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1885467_12	PHROG	phrog_64	portal protein	head and packaging
UHGV-1885467_12	UniRef90	UniRef90_A0A0H3KE58	Phage portal protein	NA
UHGV-1885467_12	eggNOG-mapper	1280.SAXN108_1934	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1885467_12	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1885467_12	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1885467_12	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1885467_13	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1885467_13	UniRef90	UniRef90_A0A6D2GHW1	Phage minor head protein	NA
UHGV-1885467_13	eggNOG-mapper	1636204.A0A0E3TAH5_9CAUD	Phage Mu protein F like protein	NA
UHGV-1885467_13	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1885467_13	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1885467_13	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-1885467_14	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1885467_14	UniRef90	UniRef90_A0A059T7Q0	Alanyl-tRNA synthetase	NA
UHGV-1885467_14	eggNOG-mapper	320842.Q4ZBZ3_9CAUD	aminoacyl-tRNA ligase activity	NA
UHGV-1885467_14	Pfam	PF14265	NA	DUF4355
UHGV-1885467_14	Structural annotation	PF14265	NA	NA
UHGV-1885467_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-1885467_15	UniRef90	UniRef90_A0A0E3XBJ7	Major capsid protein	NA
UHGV-1885467_15	eggNOG-mapper	1280.SAXN108_1930	Phage capsid family	NA
UHGV-1885467_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1885467_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1885467_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1885467_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1885467_16	PHROG	phrog_2406	NA	unknown function
UHGV-1885467_17	PHROG	phrog_1161	head-tail adaptor	connector
UHGV-1885467_17	UniRef90	UniRef90_A0A0H3KE63	Phage head-tail adapter protein	NA
UHGV-1885467_17	eggNOG-mapper	1280.SAXN108_1928	NA	NA
UHGV-1885467_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1885467_18	UniRef90	UniRef90_Q4ZBR2	ORF043	NA
UHGV-1885467_18	eggNOG-mapper	1280.SAXN108_1927	NA	NA
UHGV-1885467_18	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1885467_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1885467_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1885467_19	UniRef90	UniRef90_A0A059T7Q2	Structural protein	NA
UHGV-1885467_19	eggNOG-mapper	1636204.A0A0E3T8J0_9CAUD	exonuclease activity	NA
UHGV-1885467_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1885467_19	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1885467_19	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1885467_20	PHROG	phrog_176	tail terminator	connector
UHGV-1885467_20	UniRef90	UniRef90_Q4ZBQ9	ORF027	NA
UHGV-1885467_20	eggNOG-mapper	1280.SAXN108_1925	NA	NA
UHGV-1885467_20	Pfam	PF11367	NA	DUF3168
UHGV-1885467_21	PHROG	phrog_238	major tail protein	tail
UHGV-1885467_21	UniRef90	UniRef90_Q4ZBQ8	ORF021	NA
UHGV-1885467_21	eggNOG-mapper	1280.SAXN108_1924	domain, Protein	NA
UHGV-1885467_21	COG	COG5492	NA	NA
UHGV-1885467_21	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1885467_22	PHROG	phrog_31021	tail assembly chaperone	tail
UHGV-1885467_22	UniRef90	UniRef90_UPI001C1B6A71	tail assembly chaperone	NA
UHGV-1885467_22	eggNOG-mapper	1280.SAXN108_1923	Phage tail assembly chaperone protein, TAC	NA
UHGV-1885467_22	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-1885467_22	Structural annotation	PF12363	NA	NA
UHGV-1885467_23	PHROG	phrog_31021	tail assembly chaperone	tail
UHGV-1885467_23	UniRef90	UniRef90_Q4ZC61	ORF057	NA
UHGV-1885467_23	eggNOG-mapper	279808.SH2346	NA	NA
UHGV-1885467_24	PHROG	phrog_37657	NA	unknown function
UHGV-1885467_24	UniRef90	UniRef90_A0A0E3T8J3	Tape measure protein	NA
UHGV-1885467_24	eggNOG-mapper	1280.SAXN108_1921	Phage tail tape measure protein	NA
UHGV-1885467_24	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1885467_25	PHROG	phrog_28208	tail protein	tail
UHGV-1885467_25	UniRef90	UniRef90_A0A059T7K5	Tail protein	NA
UHGV-1885467_25	eggNOG-mapper	1280.SAXN108_1920	Phage tail protein	NA
UHGV-1885467_26	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-1885467_26	PHROG	phrog_663	minor head protein	head and packaging
UHGV-1885467_26	UniRef90	UniRef90_UPI0004455E78	SGNH/GDSL hydrolase family protein	NA
UHGV-1885467_26	eggNOG-mapper	1280.SAXN108_1919	Prophage endopeptidase tail	NA
UHGV-1885467_26	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1885467_26	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-1885467_26	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-1885467_27	PHROG	phrog_287	minor tail protein	tail
UHGV-1885467_27	UniRef90	UniRef90_Q4ZBA3	ORF002	NA
UHGV-1885467_27	eggNOG-mapper	1195071.M9NSU3_9CAUD	NA	NA
UHGV-1885467_27	Pfam	PF21311	Phage 5-bladed beta propeller receptor binding platform domain	Phage_RBD_prop
UHGV-1885467_28	PHROG	phrog_17192	NA	unknown function
UHGV-1885467_28	UniRef90	UniRef90_M9NUJ5	BppU_N domain-containing protein	NA
UHGV-1885467_28	eggNOG-mapper	1168613.I1W632_9CAUD	NA	NA
UHGV-1885467_28	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1885467_28	Structural annotation	PF10651, NF040788	NA	NA
UHGV-1885467_29	PHROG	phrog_300	tail fiber protein	tail
UHGV-1885467_29	UniRef90	UniRef90_A0A0M2NR33	NA	NA
UHGV-1885467_29	Pfam	PF11192	NA	DUF2977
UHGV-1885467_30	PHROG	phrog_23700	NA	unknown function
UHGV-1885467_30	UniRef90	UniRef90_Q4ZBH5	ORF096	NA
UHGV-1885467_30	eggNOG-mapper	396513.SCA_0513	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-1885467_30	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1885467_30	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-1885467_31	PHROG	phrog_276	NA	unknown function
UHGV-1885467_31	UniRef90	UniRef90_UPI001E5031C8	NA	NA
UHGV-1885467_31	eggNOG-mapper	985762.SAGN_01590	NA	NA
UHGV-1885467_31	Pfam	PF11166	NA	DUF2951
UHGV-1885467_32	KOfam	K23989	lytD, lytB; mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase [EC:3.2.1.96]	NA
UHGV-1885467_32	PHROG	phrog_759	tail associated cell-wall hydrolase	other
UHGV-1885467_32	UniRef90	UniRef90_A0A659ZYG1	CHAP domain-containing protein	NA
UHGV-1885467_32	eggNOG-mapper	1280.SAXN108_1913	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-1885467_32	Pfam	PF05257	CHAP domain	CHAP
UHGV-1885467_32	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-1885467_32	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-1885467_32	Structural annotation	PF01832, PF01510, NF008096, COG4193, COG3942, COG5632	NA	NA
UHGV-1885467_33	PHROG	phrog_1125	tail fiber protein	tail
UHGV-1885467_33	UniRef90	UniRef90_A9CRD3	BppU_N domain-containing protein	NA
UHGV-1885467_33	eggNOG-mapper	1280.SAXN108_1912	NA	NA
UHGV-1885467_33	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1885467_33	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-1885467_34	PHROG	phrog_1262	NA	unknown function
UHGV-1885467_34	UniRef90	UniRef90_A0A380DPG7	NA	NA
UHGV-1885467_35	PHROG	phrog_263	holin	lysis
UHGV-1885467_35	UniRef90	UniRef90_A0A0E3T9P9	Holin	NA
UHGV-1885467_35	eggNOG-mapper	106284.Q9FZY1_9CAUD	Pfam:Holin_SPP1	NA
UHGV-1885467_35	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-1885467_35	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-1885467_35	Structural annotation	PF04688	NA	NA
UHGV-1885467_36	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1885467_36	PHROG	phrog_489	endolysin	lysis
UHGV-1885467_36	UniRef90	UniRef90_Q4ZBG9	ORF007	NA
UHGV-1885467_36	eggNOG-mapper	1034809.SLUG_08860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1885467_36	Pfam	PF05257	CHAP domain	CHAP
UHGV-1885467_36	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1885467_36	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1885467_36	Structural annotation	PF08460, PF01520, TIGR02883, NF033202, COG0860, COG0791	NA	NA
UHGV-1885467_37	PHROG	phrog_6149	NA	unknown function
UHGV-1885467_37	UniRef90	UniRef90_A0A8A7XI12	NA	NA
UHGV-1885467_37	Pfam	PF16229	NA	DUF4888
UHGV-1885467_38	PHROG	phrog_4761	NA	unknown function
UHGV-1885467_39	PHROG	phrog_35522	NA	unknown function
UHGV-1885467_40	PHROG	phrog_1529	NA	unknown function
UHGV-1885467_40	UniRef90	UniRef90_UPI0002DFE4F9	XRE family transcriptional regulator	NA
UHGV-1885467_40	eggNOG-mapper	1280.SAXN108_1907	NA	NA
UHGV-1885467_40	Structural annotation	PF01381, NF040507, COG3655	NA	NA
UHGV-1885467_41	PHROG	phrog_3446	NA	unknown function
UHGV-1885467_41	UniRef90	UniRef90_W5R8Q1	PBECR4 domain-containing protein	NA
UHGV-1885467_41	eggNOG-mapper	1403390.U3PBN3_9CAUD	NA	NA
UHGV-1885467_41	Pfam	PF18813	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4	PBECR4
UHGV-1885467_41	Structural annotation	PF18813	NA	NA
UHGV-1885467_42	KOfam	K03699	tlyC; magnesium and cobalt exporter, CNNM family	NA
UHGV-1885467_42	PHROG	phrog_10948	NA	unknown function
UHGV-1885467_42	UniRef90	UniRef90_A0A2K4AM58	NA	NA
UHGV-1885467_42	eggNOG-mapper	1280.SAXN108_0915	NA	NA
UHGV-1885467_42	Pfam	PF01595	Cyclin M transmembrane N-terminal domain	CNNM
UHGV-1885467_42	COG	COG4536	NA	NA