UHGV-1887720

Genome information

Genome length 24,878 bps

CDS count 42

Completeness 72.88% (medium-quality)

geNomad score 0.9625

Prediction confidence Confident

Genome information
Genome ID	UHGV-1887720
vOTU ID	vOTU-015762
vOTU representative	Yes
Source dataset	GFD
Original genome ID	GFD_23.1_NODE_101_length_24933_cov_60.436932
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9625
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.27
Jumbo phage	No

Genome content
Genome length	24,878 bps
GC content	37.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	90.71%
Average CDS length	539.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1887720_1	PHROG	phrog_13890	NA	unknown function
UHGV-1887720_1	Structural annotation	PF19807, NF010256, COG4453	NA	NA
UHGV-1887720_3	PHROG	phrog_199	holin	lysis
UHGV-1887720_3	UniRef90	UniRef90_A0A417W6L6	Holin	NA
UHGV-1887720_3	eggNOG-mapper	1298920.KI911353_gene4833	Bacteriophage holin family	NA
UHGV-1887720_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1887720_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1887720_3	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1887720_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1887720_4	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1887720_4	UniRef90	UniRef90_A0A2G3Q1I5	Peptidase S74 domain-containing protein	NA
UHGV-1887720_4	eggNOG-mapper	649747.HMPREF0083_00991	Prophage endopeptidase tail	NA
UHGV-1887720_4	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-1887720_4	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1887720_4	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1887720_4	COG	COG4926	Phage-related protein	NA
UHGV-1887720_5	UniRef90	UniRef90_A0A1V4SIK0	HTH cro/C1-type domain-containing protein	NA
UHGV-1887720_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1887720_5	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-1887720_6	PHROG	phrog_1382	NA	unknown function
UHGV-1887720_6	eggNOG-mapper	1410650.JHWL01000003_gene2818	NA	NA
UHGV-1887720_6	Structural annotation	NF040910	NA	NA
UHGV-1887720_7	PHROG	phrog_24451	NA	unknown function
UHGV-1887720_7	UniRef90	UniRef90_A0A3P6KYQ0	NA	NA
UHGV-1887720_7	eggNOG-mapper	931276.Cspa_c07590	NA	NA
UHGV-1887720_8	PHROG	phrog_4492	tail fiber protein	tail
UHGV-1887720_8	UniRef90	UniRef90_A0A6J4EHT4	CBM-cenC domain-containing protein	NA
UHGV-1887720_8	eggNOG-mapper	931276.Cspa_c07580	nuclear chromosome segregation	NA
UHGV-1887720_8	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1887720_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1887720_9	eggNOG-mapper	1304880.JAGB01000002_gene2207	NA	NA
UHGV-1887720_9	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1887720_9	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1887720_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-1887720_10	KOfam	K10398	KIF11, EG5; kinesin family member 11	NA
UHGV-1887720_10	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1887720_10	UniRef90	UniRef90_A0A1Y4R6K5	PhageMin_Tail domain-containing protein	NA
UHGV-1887720_10	eggNOG-mapper	658655.HMPREF0988_00531	Phage-related minor tail protein	NA
UHGV-1887720_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1887720_10	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1887720_10	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1887720_10	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-1887720_11	eggNOG-mapper	720554.Clocl_3670	NA	NA
UHGV-1887720_12	Structural annotation	PF11836	NA	NA
UHGV-1887720_13	PHROG	phrog_88	major tail protein	tail
UHGV-1887720_13	UniRef90	UniRef90_S6FG30	Phage major tail protein	NA
UHGV-1887720_13	eggNOG-mapper	1120978.KB894083_gene900	phage major tail protein, phi13 family	NA
UHGV-1887720_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1887720_13	COG	COG5492	NA	NA
UHGV-1887720_13	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1887720_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1887720_14	UniRef90	UniRef90_R6FMT8	HK97 gp10 family phage protein	NA
UHGV-1887720_14	eggNOG-mapper	33035.JPJF01000039_gene277	NA	NA
UHGV-1887720_14	Structural annotation	TIGR01725	NA	NA
UHGV-1887720_15	PHROG	phrog_78	tail terminator	connector
UHGV-1887720_15	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-1887720_15	Structural annotation	PF05657	NA	NA
UHGV-1887720_16	PHROG	phrog_19734	NA	unknown function
UHGV-1887720_16	UniRef90	UniRef90_A0A3R6AW46	Head-tail adaptor protein	NA
UHGV-1887720_16	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-1887720_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1887720_17	PHROG	phrog_2550	NA	unknown function
UHGV-1887720_17	eggNOG-mapper	1235798.C817_04586	NA	NA
UHGV-1887720_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1887720_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-1887720_18	UniRef90	UniRef90_A0A1C6H720	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1887720_18	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-1887720_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1887720_18	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-1887720_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1887720_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1887720_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1887720_19	KOfam	K06904	NA	NA
UHGV-1887720_19	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1887720_19	UniRef90	UniRef90_A0A1F2PDD9	Caudovirus prohead protease	NA
UHGV-1887720_19	eggNOG-mapper	1235798.C817_04584	Phage prohead protease, HK97 family	NA
UHGV-1887720_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1887720_19	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1887720_19	COG	COG3740	Phage head maturation protease	NA
UHGV-1887720_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1887720_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-1887720_20	UniRef90	UniRef90_A0A0D8IVL0	Phage portal protein	NA
UHGV-1887720_20	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-1887720_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1887720_20	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1887720_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1887720_20	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1887720_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1887720_21	UniRef90	UniRef90_A0A1Y4R6J8	Terminase	NA
UHGV-1887720_21	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-1887720_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1887720_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1887720_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1887720_21	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-1887720_22	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-1887720_22	UniRef90	UniRef90_R6ETV2	Phage terminase small subunit P27 family	NA
UHGV-1887720_22	eggNOG-mapper	1033744.CAEL01000029_gene1286	Phage terminase, small subunit	NA
UHGV-1887720_22	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1887720_22	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1887720_23	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1887720_23	UniRef90	UniRef90_A0A412UTE1	HNH endonuclease	NA
UHGV-1887720_23	eggNOG-mapper	1232446.BAIE02000002_gene820	HNH nucleases	NA
UHGV-1887720_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1887720_23	Structural annotation	TIGR02646	NA	NA
UHGV-1887720_26	Structural annotation	PF01402, NF010256	NA	NA
UHGV-1887720_27	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-1887720_27	UniRef90	UniRef90_UPI001897A0D4	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-1887720_27	eggNOG-mapper	1235799.C818_01933	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-1887720_27	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-1887720_27	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1887720_27	Structural annotation	PF15919, COG1598	NA	NA
UHGV-1887720_28	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-1887720_28	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1887720_28	UniRef90	UniRef90_A0A414J4J8	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-1887720_28	eggNOG-mapper	476272.RUMHYD_02842	NA	NA
UHGV-1887720_28	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-1887720_28	Structural annotation	PF07927	NA	NA
UHGV-1887720_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1887720_29	UniRef90	UniRef90_A0A521J4J0	NA	NA
UHGV-1887720_29	eggNOG-mapper	203119.Cthe_2469	phage transcriptional regulator, RinA family	NA
UHGV-1887720_29	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-1887720_29	Structural annotation	PF05263, TIGR01636, COG1595	NA	NA
UHGV-1887720_31	PHROG	phrog_17690	NA	unknown function
UHGV-1887720_31	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-1887720_31	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-1887720_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1887720_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1887720_32	UniRef90	UniRef90_UPI00196118A2	single-stranded DNA-binding protein	NA
UHGV-1887720_32	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-1887720_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1887720_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1887720_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1887720_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1887720_32	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1887720_34	PHROG	phrog_24518	NA	unknown function
UHGV-1887720_36	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1887720_36	eggNOG-mapper	610130.Closa_0713	NA	NA
UHGV-1887720_36	Structural annotation	PF11726	NA	NA
UHGV-1887720_38	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-1887720_38	PHROG	phrog_11420	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1887720_38	UniRef90	UniRef90_A0A7U9RV42	HTH_38 domain-containing protein	NA
UHGV-1887720_38	eggNOG-mapper	411463.EUBVEN_00488	Helix-turn-helix domain	NA
UHGV-1887720_38	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-1887720_38	Structural annotation	PF11427	NA	NA
UHGV-1887720_39	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-1887720_39	PHROG	phrog_4646	transposase	integration and excision
UHGV-1887720_39	UniRef90	UniRef90_A0A7U9NJE2	Integrase catalytic domain-containing protein	NA
UHGV-1887720_39	eggNOG-mapper	411463.EUBVEN_00408	PFAM Integrase catalytic region	NA
UHGV-1887720_39	NCBIFam	NF033563.0	IS30 family transposase	NA
UHGV-1887720_39	COG	COG2826	Transposase and inactivated derivatives, IS30 family	NA
UHGV-1887720_39	Structural annotation	PF13936, PF02914, MF_01310, NF033563, COG2826	NA	NA
UHGV-1887720_40	PHROG	phrog_13890	NA	unknown function
UHGV-1887720_40	UniRef90	UniRef90_A0A6N7UU43	NA	NA
UHGV-1887720_40	eggNOG-mapper	877414.ATWA01000049_gene449	NA	NA
UHGV-1887720_40	Structural annotation	PF10723, NF010256, COG4710	NA	NA