UHGV-1894552

Genome information

Genome length 33,332 bps

CDS count 37

Completeness 65.22% (medium-quality)

geNomad score 0.9553

Prediction confidence Confident

Genome information
Genome ID	UHGV-1894552
vOTU ID	vOTU-030495
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300000292\|EM305_1000283\|provirus_28964_62295
BioSample	NA
Country	Ireland
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.22% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9553
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.04
Jumbo phage	No

Genome content
Genome length	33,332 bps
GC content	51.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	92.54%
Average CDS length	834.97 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1894552_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1894552_2	UniRef90	UniRef90_R7K984	Sigma70_r4 domain-containing protein	NA
UHGV-1894552_2	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-1894552_4	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1894552_4	PHROG	phrog_31467	NA	unknown function
UHGV-1894552_4	UniRef90	UniRef90_R5FGU5	Putative phage DNA packaging protein Gp2	NA
UHGV-1894552_4	eggNOG-mapper	118005.AWNK01000018_gene935	DNA packaging protein	NA
UHGV-1894552_4	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1894552_4	COG	COG5565	Phage terminase large (ATPase) subunit and inactivated derivatives	NA
UHGV-1894552_5	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-1894552_5	UniRef90	UniRef90_A0A3A9EQX0	Alpha-L-fucosidase	NA
UHGV-1894552_5	eggNOG-mapper	457415.HMPREF1006_00457	NA	NA
UHGV-1894552_5	AcrCatalog	cluster_16277	NA	NA
UHGV-1894552_5	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-1894552_5	Structural annotation	PF12224	NA	NA
UHGV-1894552_6	KOfam	K00682	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	NA
UHGV-1894552_6	PHROG	phrog_2520	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UHGV-1894552_6	UniRef90	UniRef90_A0A1V5HPG8	GGACT domain-containing protein	NA
UHGV-1894552_6	eggNOG-mapper	1384066.JAGT01000001_gene946	Gamma-glutamyl cyclotransferase, AIG2-like	NA
UHGV-1894552_6	Pfam	PF06094	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
UHGV-1894552_6	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-1894552_6	Structural annotation	PF06094, COG2105	NA	NA
UHGV-1894552_7	PHROG	phrog_2945	NA	unknown function
UHGV-1894552_7	eggNOG-mapper	1235799.C818_01022	NA	NA
UHGV-1894552_8	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1894552_8	UniRef90	UniRef90_UPI000B7FA7CC	terminase large subunit	NA
UHGV-1894552_8	eggNOG-mapper	552396.HMPREF0863_01433	large subunit	NA
UHGV-1894552_8	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1894552_8	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1894552_8	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1894552_8	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1894552_9	PHROG	phrog_12	portal protein	head and packaging
UHGV-1894552_9	UniRef90	UniRef90_A0A1E3BX67	Phage portal protein	NA
UHGV-1894552_9	eggNOG-mapper	665950.HMPREF1025_02651	Phage portal protein	NA
UHGV-1894552_9	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1894552_9	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1894552_9	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1894552_9	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1894552_10	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1894552_10	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1894552_10	UniRef90	UniRef90_UPI00068A0CA1	Clp protease ClpP	NA
UHGV-1894552_10	eggNOG-mapper	1408415.JHXL01000001_gene390	serine-type endopeptidase activity	NA
UHGV-1894552_10	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1894552_10	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1894552_10	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1894552_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-1894552_11	UniRef90	UniRef90_UPI001F466B0A	phage major capsid protein	NA
UHGV-1894552_11	eggNOG-mapper	1120978.KB894083_gene906	Phage capsid family	NA
UHGV-1894552_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1894552_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1894552_11	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1894552_11	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1894552_12	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1894552_12	UniRef90	UniRef90_UPI001F473B27	head-tail connector protein	NA
UHGV-1894552_12	eggNOG-mapper	665950.HMPREF1025_02654	NA	NA
UHGV-1894552_12	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1894552_12	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1894552_12	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1894552_13	UniRef90	UniRef90_A0A0X8H075	Phage head-tail adapter protein	NA
UHGV-1894552_13	eggNOG-mapper	994573.T472_0210745	head-tail	NA
UHGV-1894552_13	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1894552_13	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1894552_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1894552_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1894552_14	UniRef90	UniRef90_A0A410PTP7	HK97 gp10 family phage protein	NA
UHGV-1894552_14	eggNOG-mapper	1286171.EAL2_c05930	TIGRFAM phage protein, HK97 gp10 family	NA
UHGV-1894552_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1894552_14	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1894552_14	Structural annotation	TIGR01725	NA	NA
UHGV-1894552_15	PHROG	phrog_78	tail terminator	connector
UHGV-1894552_15	eggNOG-mapper	1216932.CM240_0622	High confidence in function and specificity	NA
UHGV-1894552_15	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-1894552_16	PHROG	phrog_88	major tail protein	tail
UHGV-1894552_16	UniRef90	UniRef90_A0A224B030	Phi13 family phage major tail protein	NA
UHGV-1894552_16	eggNOG-mapper	1216932.CM240_0623	phage major tail protein, phi13 family	NA
UHGV-1894552_16	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1894552_16	COG	COG5492	NA	NA
UHGV-1894552_16	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1894552_17	PHROG	phrog_2115	tail protein	tail
UHGV-1894552_17	eggNOG-mapper	1499680.CCFE01000031_gene3752	NA	NA
UHGV-1894552_17	Structural annotation	PF11836	NA	NA
UHGV-1894552_18	PHROG	phrog_10988	NA	unknown function
UHGV-1894552_18	eggNOG-mapper	573061.Clocel_3968	NA	NA
UHGV-1894552_19	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1894552_19	UniRef90	UniRef90_A0A6N2WL21	Chromosome partition protein Smc	NA
UHGV-1894552_19	eggNOG-mapper	665950.HMPREF1025_02680	Phage-related minor tail protein	NA
UHGV-1894552_19	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1894552_19	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1894552_19	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1894552_20	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1894552_20	UniRef90	UniRef90_A0A224AT67	Phage tail component	NA
UHGV-1894552_20	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-1894552_20	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1894552_20	COG	COG4722	Phage-related protein YomH	NA
UHGV-1894552_20	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1894552_21	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1894552_21	UniRef90	UniRef90_UPI001F477F79	phage tail protein	NA
UHGV-1894552_21	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-1894552_21	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1894552_21	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1894552_21	COG	COG4926	Phage-related protein	NA
UHGV-1894552_21	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1894552_22	PHROG	phrog_3267	tail protein	tail
UHGV-1894552_22	UniRef90	UniRef90_R9C033	YkqB	NA
UHGV-1894552_22	eggNOG-mapper	207656.S6BUV4_9CAUD	NA	NA
UHGV-1894552_22	Structural annotation	PF02010, MF_04116, NF010681, COG1361	NA	NA
UHGV-1894552_23	PHROG	phrog_1899	NA	unknown function
UHGV-1894552_23	eggNOG-mapper	1415775.U729_3142	NA	NA
UHGV-1894552_23	Pfam	PF07902	gp58-like protein	Gp58
UHGV-1894552_23	COG	COG4926	Phage-related protein	NA
UHGV-1894552_25	PHROG	phrog_1401	NA	unknown function
UHGV-1894552_25	Structural annotation	PF07761	NA	NA
UHGV-1894552_26	UniRef90	UniRef90_A0A1Q6MD24	Branched-chain amino acid ABC transporter permease	NA
UHGV-1894552_26	eggNOG-mapper	742740.HMPREF9474_03521	NA	NA
UHGV-1894552_27	PHROG	phrog_1129	holin	lysis
UHGV-1894552_27	UniRef90	UniRef90_A0A1G6ETY7	Phage holin family Hol44, holin superfamily V	NA
UHGV-1894552_27	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1894552_27	Structural annotation	PF06946	NA	NA
UHGV-1894552_28	Pfam	PF20612	SHOCT domain	SHOCT_2
UHGV-1894552_29	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1894552_29	PHROG	phrog_95	integrase	integration and excision
UHGV-1894552_29	UniRef90	UniRef90_UPI0010A5F732	recombinase family protein	NA
UHGV-1894552_29	eggNOG-mapper	1410633.JHWR01000012_gene107	Recombinase	NA
UHGV-1894552_29	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1894552_29	Pfam	PF07508	Recombinase	Recombinase
UHGV-1894552_29	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1894552_29	Structural annotation	PF07508, PF00239, PF10944, NF041201, COG1961	NA	NA
UHGV-1894552_30	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1894552_30	PHROG	phrog_95	integrase	integration and excision
UHGV-1894552_30	UniRef90	UniRef90_UPI000F54A9FB	recombinase family protein	NA
UHGV-1894552_30	eggNOG-mapper	646529.Desaci_1341	Site-specific recombinase, DNA invertase Pin	NA
UHGV-1894552_30	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1894552_30	Pfam	PF07508	Recombinase	Recombinase
UHGV-1894552_30	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1894552_30	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1894552_30	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-1894552_31	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-1894552_32	PHROG	phrog_14242	major head protein	head and packaging
UHGV-1894552_32	UniRef90	UniRef90_A0A3B9KV88	Phage major capsid protein	NA
UHGV-1894552_32	eggNOG-mapper	588581.Cpap_1528	NA	NA
UHGV-1894552_32	NCBIFam	NF033394.1	phage major capsid protein	NA
UHGV-1894552_33	eggNOG-mapper	445971.ANASTE_02357	NA	NA
UHGV-1894552_34	Structural annotation	PF20387	NA	NA
UHGV-1894552_35	Structural annotation	PF11134, MF_03022, TIGR04312, COG3490	NA	NA
UHGV-1894552_37	UniRef90	UniRef90_A0A4R3LER0	Putative membrane protein	NA
UHGV-1894552_37	eggNOG-mapper	1029718.SFBM_0485	COG5546 Small integral membrane protein	NA
UHGV-1894552_37	COG	COG5546	NA	NA