UHGV-1895508

Genome information

vOTU vOTU-019228

Genome length 30,259 bps

CDS count 42

Completeness 73.49% (medium-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-1895508
vOTU ID	vOTU-019228
vOTU representative	Yes
Source dataset	GFD
Original genome ID	GFD_3.6_NODE_75_length_90694_cov_23.400865
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.27
Jumbo phage	No

Genome content
Genome length	30,259 bps
GC content	40.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	92.60%
Average CDS length	669.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1895508_1	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-1895508_1	UniRef90	UniRef90_A0A0D8IYS0	HTH cro/C1-type domain-containing protein	NA
UHGV-1895508_1	eggNOG-mapper	445972.ANACOL_00561	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1895508_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1895508_1	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1895508_1	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-1895508_2	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1895508_2	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1895508_2	UniRef90	UniRef90_R6U1Y8	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-1895508_2	eggNOG-mapper	742733.HMPREF9469_02855	COG COG0338 Site-specific DNA methylase	NA
UHGV-1895508_2	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-1895508_2	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1895508_2	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-1895508_2	COG	COG0338	DNA-adenine methylase	NA
UHGV-1895508_2	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-1895508_3	PHROG	phrog_18218	NA	unknown function
UHGV-1895508_3	UniRef90	UniRef90_R6U590	Ribonuclease S-4	NA
UHGV-1895508_3	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-1895508_3	Structural annotation	PF06946	NA	NA
UHGV-1895508_4	PHROG	phrog_21357	endolysin	lysis
UHGV-1895508_4	UniRef90	UniRef90_R6VAG8	Endolysin putative	NA
UHGV-1895508_4	eggNOG-mapper	693746.OBV_p-00370	NlpC p60 family protein	NA
UHGV-1895508_4	Pfam	PF05257	CHAP domain	CHAP
UHGV-1895508_4	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1895508_4	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1895508_4	Structural annotation	PF05382, COG3409	NA	NA
UHGV-1895508_5	PHROG	phrog_1382	NA	unknown function
UHGV-1895508_5	eggNOG-mapper	411902.CLOBOL_00118	NA	NA
UHGV-1895508_5	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1895508_5	Structural annotation	NF040910	NA	NA
UHGV-1895508_7	PHROG	phrog_18110	NA	unknown function
UHGV-1895508_7	eggNOG-mapper	573061.Clocel_0796	Phage minor structural protein	NA
UHGV-1895508_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1895508_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1895508_7	COG	COG4926	Phage-related protein	NA
UHGV-1895508_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-1895508_8	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-1895508_9	PHROG	phrog_19074	NA	unknown function
UHGV-1895508_9	UniRef90	UniRef90_A0A1G4WU66	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-1895508_9	eggNOG-mapper	33035.JPJF01000033_gene2265	Phage-related minor tail protein	NA
UHGV-1895508_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1895508_9	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1895508_9	COG	COG5283	Phage-related tail protein	NA
UHGV-1895508_9	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1895508_10	UniRef90	UniRef90_A0A1G4WVI6	Beta-lactamase inhibitor (BLIP)	NA
UHGV-1895508_10	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1895508_11	PHROG	phrog_706	NA	unknown function
UHGV-1895508_11	UniRef90	UniRef90_A0A1M6HSL9	Bacteriophage Gp15 protein	NA
UHGV-1895508_11	eggNOG-mapper	642492.Clole_0828	Bacteriophage Gp15 protein	NA
UHGV-1895508_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1895508_12	PHROG	phrog_4450	NA	unknown function
UHGV-1895508_12	UniRef90	UniRef90_A0A6B4NF44	AP endonuclease	NA
UHGV-1895508_12	eggNOG-mapper	1280692.AUJL01000004_gene838	NA	NA
UHGV-1895508_12	Pfam	PF20378	NA	DUF6673
UHGV-1895508_12	Structural annotation	PF20378	NA	NA
UHGV-1895508_13	PHROG	phrog_3099	NA	unknown function
UHGV-1895508_13	UniRef90	UniRef90_A0A3P6KYP0	Phage capsid family protein	NA
UHGV-1895508_13	eggNOG-mapper	931276.Cspa_c07510	NA	NA
UHGV-1895508_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1895508_14	PHROG	phrog_3266	tail completion	connector
UHGV-1895508_14	UniRef90	UniRef90_UPI00189B97A4	chloramphenicol resistance protein	NA
UHGV-1895508_14	eggNOG-mapper	545697.HMPREF0216_02854	NA	NA
UHGV-1895508_14	Structural annotation	PF12691	NA	NA
UHGV-1895508_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1895508_15	UniRef90	UniRef90_A0A1G4WU41	Minor capsid protein	NA
UHGV-1895508_15	eggNOG-mapper	1160721.RBI_II00534	Minor capsid protein	NA
UHGV-1895508_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1895508_15	Structural annotation	PF11114	NA	NA
UHGV-1895508_16	Pfam	PF20536	NA	DUF6751
UHGV-1895508_16	Structural annotation	PF20536, TIGR01563, COG1853	NA	NA
UHGV-1895508_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1895508_17	eggNOG-mapper	411461.DORFOR_00743	NA	NA
UHGV-1895508_18	PHROG	phrog_212	major head protein	head and packaging
UHGV-1895508_18	UniRef90	UniRef90_UPI00164CBFBC	phage capsid protein	NA
UHGV-1895508_18	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-1895508_18	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-1895508_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1895508_19	UniRef90	UniRef90_A0A1G4WVL7	Phage minor structural protein GP20	NA
UHGV-1895508_19	eggNOG-mapper	1262449.CP6013_3198	Phage minor structural protein GP20	NA
UHGV-1895508_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1895508_19	Structural annotation	PF06810	NA	NA
UHGV-1895508_20	eggNOG-mapper	1280689.AUJC01000003_gene965	NA	NA
UHGV-1895508_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1895508_21	UniRef90	UniRef90_A0A3D0XA46	Phage capsid protein	NA
UHGV-1895508_21	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-1895508_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1895508_21	COG	COG2369	NA	NA
UHGV-1895508_21	Structural annotation	PF06152, PF12636	NA	NA
UHGV-1895508_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-1895508_22	UniRef90	UniRef90_A0A3D0XCF1	Phage capsid protein	NA
UHGV-1895508_22	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-1895508_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1895508_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1895508_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1895508_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1895508_23	UniRef90	UniRef90_A0A373L0G3	PBSX family phage terminase large subunit	NA
UHGV-1895508_23	eggNOG-mapper	1120746.CCNL01000014_gene2093	DNA packaging	NA
UHGV-1895508_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1895508_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1895508_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-1895508_23	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1895508_25	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-1895508_25	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-1895508_25	UniRef90	UniRef90_R6U239	NGN domain-containing protein	NA
UHGV-1895508_25	eggNOG-mapper	1487923.DP73_06135	Participates in transcription elongation, termination and antitermination	NA
UHGV-1895508_25	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-1895508_25	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-1895508_26	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-1895508_26	UniRef90	UniRef90_A0A373L007	NA	NA
UHGV-1895508_26	eggNOG-mapper	663278.Ethha_0503	NA	NA
UHGV-1895508_26	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-1895508_26	Structural annotation	PF11985	NA	NA
UHGV-1895508_27	PHROG	phrog_25462	NA	unknown function
UHGV-1895508_27	UniRef90	UniRef90_A0A413QHC4	Type VI secretion protein	NA
UHGV-1895508_27	eggNOG-mapper	552398.HMPREF0866_03124	NA	NA
UHGV-1895508_27	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-1895508_28	eggNOG-mapper	663278.Ethha_0085	NA	NA
UHGV-1895508_29	PHROG	phrog_532	late transcriptional activator	transcription regulation
UHGV-1895508_29	UniRef90	UniRef90_R6U5E4	Mor transcription activator domain protein	NA
UHGV-1895508_29	eggNOG-mapper	663278.Ethha_2379	Mor transcription activator	NA
UHGV-1895508_29	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-1895508_29	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-1895508_29	Structural annotation	PF08765, NF040785, COG5566	NA	NA
UHGV-1895508_30	PHROG	phrog_286	NA	unknown function
UHGV-1895508_30	UniRef90	UniRef90_R6VAP3	Voltage-dependent P/Q-type calcium channel subunit alpha-1A	NA
UHGV-1895508_30	eggNOG-mapper	552398.HMPREF0866_03127	NA	NA
UHGV-1895508_30	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-1895508_30	Structural annotation	PF06252	NA	NA
UHGV-1895508_31	eggNOG-mapper	1160721.RBI_II00551	NA	NA
UHGV-1895508_31	AcrCatalog	cluster_71843	NA	NA
UHGV-1895508_32	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-1895508_32	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-1895508_32	UniRef90	UniRef90_R6UHS6	SpoVT-AbrB domain-containing protein	NA
UHGV-1895508_32	eggNOG-mapper	742733.HMPREF9469_02890	toxin-antitoxin pair type II binding	NA
UHGV-1895508_32	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-1895508_32	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-1895508_32	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-1895508_34	PHROG	phrog_5671	NA	unknown function
UHGV-1895508_34	eggNOG-mapper	485916.Dtox_4218	NA	NA
UHGV-1895508_36	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-1895508_36	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-1895508_36	UniRef90	UniRef90_R6UCH5	AAA domain protein	NA
UHGV-1895508_36	eggNOG-mapper	411473.RUMCAL_01909	AAA domain	NA
UHGV-1895508_36	Pfam	PF13401	AAA domain	AAA_22
UHGV-1895508_36	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-1895508_36	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-1895508_37	PHROG	phrog_310	transposase	integration and excision
UHGV-1895508_37	UniRef90	UniRef90_R6UHU0	Mu DNA binding I gamma subdomain protein	NA
UHGV-1895508_37	eggNOG-mapper	445972.ANACOL_00518	Mu transposase, C-terminal	NA
UHGV-1895508_37	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-1895508_37	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-1895508_37	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-1895508_37	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-1895508_37	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-1895508_40	KOfam	K21686	prpR; XRE family transcriptional regulator, fatty acid utilization regulator	NA
UHGV-1895508_40	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-1895508_40	UniRef90	UniRef90_R6VAS1	Transcriptional regulator XRE family	NA
UHGV-1895508_40	eggNOG-mapper	97138.C820_00785	Helix-turn-helix XRE-family like proteins	NA
UHGV-1895508_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1895508_40	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1895508_41	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1895508_41	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1895508_41	UniRef90	UniRef90_R6UCI6	Putative phage repressor	NA
UHGV-1895508_41	eggNOG-mapper	999413.HMPREF1094_00245	Peptidase S24-like	NA
UHGV-1895508_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1895508_41	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1895508_41	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1895508_41	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA