UHGV-1897288

Genome information

Genome length 47,869 bps

CDS count 64

Completeness 100.00% (complete)

geNomad score 0.9660

Prediction confidence Confident

Genome information
Genome ID	UHGV-1897288
vOTU ID	vOTU-006924
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300006298\|Ga0099618_100240
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9660
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.79
Jumbo phage	No

Genome content
Genome length	47,869 bps
GC content	30.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	90.73%
Average CDS length	680.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1897288_1	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-1897288_1	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-1897288_1	UniRef90	UniRef90_UPI0018A8BD84	ParM/StbA family protein	NA
UHGV-1897288_1	eggNOG-mapper	1196322.A370_01998	StbA protein	NA
UHGV-1897288_1	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-1897288_1	Pfam	PF21522	Archaeal actin homologue MreB-like, C-terminal	MreB-like_C
UHGV-1897288_1	COG	COG0849	Cell division ATPase FtsA	NA
UHGV-1897288_1	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-1897288_2	UniRef90	UniRef90_UPI001158F43E	circadian clock-controlled protein	NA
UHGV-1897288_2	eggNOG-mapper	1033737.CAEV01000075_gene567	NA	NA
UHGV-1897288_3	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-1897288_6	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1897288_6	eggNOG-mapper	935948.KE386495_gene2274	NA	NA
UHGV-1897288_6	Structural annotation	PF11134, MF_03022, NF010237, TIGR04362, COG5276	NA	NA
UHGV-1897288_7	PHROG	phrog_4311	minor head protein	head and packaging
UHGV-1897288_10	UniRef90	UniRef90_UPI0006924807	BhlA/UviB family holin-like peptide	NA
UHGV-1897288_10	eggNOG-mapper	1128398.Curi_c00380	BhlA holin family	NA
UHGV-1897288_10	Pfam	PF10960	BhlA holin family	Holin_BhlA
UHGV-1897288_11	PHROG	phrog_13256	NA	unknown function
UHGV-1897288_11	UniRef90	UniRef90_A0A0S6U776	Phage exported protein	NA
UHGV-1897288_11	eggNOG-mapper	445335.CBN_1403	NA	NA
UHGV-1897288_12	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1897288_12	PHROG	phrog_435	endolysin	lysis
UHGV-1897288_12	UniRef90	UniRef90_UPI0006D839B5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1897288_12	eggNOG-mapper	1280689.AUJC01000007_gene3302	Ami_3	NA
UHGV-1897288_12	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1897288_12	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1897288_12	Structural annotation	PF01520, PF05036, MF_02022, MF_00562, TIGR02883, COG0860, COG3147	NA	NA
UHGV-1897288_14	KOfam	K01159	ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]	NA
UHGV-1897288_14	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1897288_14	UniRef90	UniRef90_K2F1U9	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-1897288_14	eggNOG-mapper	50960.LS81_01710	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-1897288_14	Pfam	PF02075	Crossover junction endodeoxyribonuclease RuvC	RuvC
UHGV-1897288_14	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-1897288_14	Structural annotation	PF07066, MF_00034, NF000711, COG0817	NA	NA
UHGV-1897288_15	UniRef90	UniRef90_A0A3D2G0A7	Thymidylate synthase ThyX	NA
UHGV-1897288_15	eggNOG-mapper	1235793.C809_02394	NA	NA
UHGV-1897288_15	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-1897288_18	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-1897288_18	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1897288_18	UniRef90	UniRef90_UPI000BF448AA	PD-(D/E)XK nuclease family protein	NA
UHGV-1897288_18	eggNOG-mapper	1356854.N007_05795	Belongs to the helicase family. UvrD subfamily	NA
UHGV-1897288_18	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-1897288_18	COG	COG2887	RecB family exonuclease	NA
UHGV-1897288_18	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1897288_20	KOfam	K01491	folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]	NA
UHGV-1897288_20	PHROG	phrog_7320	tetrahydrofolate dehydrogenase and cyclohydrolase	other
UHGV-1897288_20	UniRef90	UniRef90_UPI001F0513F5	bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase	NA
UHGV-1897288_20	eggNOG-mapper	1122172.KB890272_gene7	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate	NA
UHGV-1897288_20	Pfam	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain	THF_DHG_CYH
UHGV-1897288_20	Pfam	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	THF_DHG_CYH_C
UHGV-1897288_20	COG	COG0190	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	NA
UHGV-1897288_20	HAMAP	MF_01576	Bifunctional protein FolD [folD]	NA
UHGV-1897288_20	Structural annotation	PF02882, PF00763, MF_01576, NF010775, COG0190	NA	NA
UHGV-1897288_22	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-1897288_22	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1897288_22	UniRef90	UniRef90_A0A1H7YHN9	DNA polymerase III subunit alpha	NA
UHGV-1897288_22	eggNOG-mapper	580331.Thit_1632	TIGRFAM DNA polymerase III, alpha subunit	NA
UHGV-1897288_22	Pfam	PF02811	PHP domain	PHP
UHGV-1897288_22	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-1897288_22	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-1897288_22	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-1897288_22	Pfam	PF01336	OB-fold nucleic acid binding domain	tRNA_anti-codon
UHGV-1897288_22	NCBIFam	TIGR00594.1	DNA polymerase III subunit alpha	NA
UHGV-1897288_22	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-1897288_22	Structural annotation	PF07733, PF17657, PF02811, PF14579, PF01336, MF_01902, NF004226, COG0587	NA	NA
UHGV-1897288_25	PHROG	phrog_236	nucleotide kinase	other
UHGV-1897288_25	UniRef90	UniRef90_UPI001B2E6258	NA	NA
UHGV-1897288_25	eggNOG-mapper	1118054.CAGW01000095_gene4680	NA	NA
UHGV-1897288_25	Pfam	PF11753	NA	DUF3310
UHGV-1897288_27	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-1897288_27	UniRef90	UniRef90_A0A3P6KFK5	MazG family protein	NA
UHGV-1897288_27	eggNOG-mapper	1226325.HMPREF1548_02959	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-1897288_27	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1897288_27	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1897288_27	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-1897288_28	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-1897288_29	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1897288_29	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1897288_29	UniRef90	UniRef90_A0A4D7QE14	Toprim domain-containing protein	NA
UHGV-1897288_29	eggNOG-mapper	546414.Deide_04900	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-1897288_29	PADLOC	drt-UG29	DRT	DRT
UHGV-1897288_29	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1897288_29	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-1897288_29	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1897288_29	Structural annotation	PF01807, PF13155, PF08275, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-1897288_30	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1897288_30	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1897288_30	UniRef90	UniRef90_UPI000EBD570D	replicative DNA helicase	NA
UHGV-1897288_30	eggNOG-mapper	1273742.M1HNB2_9CAUD	DNA helicase activity	NA
UHGV-1897288_30	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1897288_30	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1897288_30	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1897288_37	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-1897288_37	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-1897288_37	UniRef90	UniRef90_W0U9K2	mRNA interferase	NA
UHGV-1897288_37	eggNOG-mapper	1160721.RBI_II00566	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-1897288_37	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-1897288_37	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-1897288_37	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-1897288_38	PHROG	phrog_1192	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1897288_38	UniRef90	UniRef90_A0A523IJA0	gp32 domain-containing protein	NA
UHGV-1897288_40	PHROG	phrog_10208	NA	unknown function
UHGV-1897288_41	PHROG	phrog_9027	NA	unknown function
UHGV-1897288_45	UniRef90	UniRef90_A0A1S1H1I5	DpnD protein	NA
UHGV-1897288_45	eggNOG-mapper	1291050.JAGE01000001_gene1086	DpnD/PcfM-like protein	NA
UHGV-1897288_45	Pfam	PF14207	DpnD/PcfM-like protein	DpnD-PcfM
UHGV-1897288_50	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-1897288_52	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-1897288_53	PHROG	phrog_918	NA	unknown function
UHGV-1897288_53	UniRef90	UniRef90_UPI001CBAD829	NA	NA
UHGV-1897288_53	eggNOG-mapper	1123263.AUKY01000046_gene482	NA	NA
UHGV-1897288_53	Pfam	PF19791	NA	DUF6275
UHGV-1897288_53	Structural annotation	PF19791	NA	NA
UHGV-1897288_54	PHROG	phrog_872	NA	unknown function
UHGV-1897288_54	UniRef90	UniRef90_UPI001D0A1AD1	NA	NA
UHGV-1897288_54	eggNOG-mapper	278197.PEPE_0778	NA	NA
UHGV-1897288_54	Pfam	PF11195	NA	DUF2829
UHGV-1897288_54	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-1897288_54	Structural annotation	PF11195	NA	NA
UHGV-1897288_56	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-1897288_56	PHROG	phrog_38407	NA	unknown function
UHGV-1897288_56	UniRef90	UniRef90_UPI000E6C46F7	DNA packaging protein	NA
UHGV-1897288_56	eggNOG-mapper	935837.JAEK01000054_gene1465	Mu-like prophage FluMu protein gp28	NA
UHGV-1897288_56	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-1897288_56	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1897288_57	PHROG	phrog_156	portal protein	head and packaging
UHGV-1897288_57	UniRef90	UniRef90_A0A6M3KIA4	Putative head to tail joining protein	NA
UHGV-1897288_57	eggNOG-mapper	871968.DESME_08930	NA	NA
UHGV-1897288_57	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1897288_59	PHROG	phrog_371	major head protein	head and packaging
UHGV-1897288_59	UniRef90	UniRef90_UPI000E6BE03E	Mu-like prophage major head subunit gpT family protein	NA
UHGV-1897288_59	eggNOG-mapper	2342.SOPEG_2715	Mu-like prophage major head subunit gpT	NA
UHGV-1897288_59	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-1897288_59	COG	COG4397	Mu-like prophage major head subunit gpT	NA
UHGV-1897288_59	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1897288_60	PHROG	phrog_14558	tail spike protein	tail
UHGV-1897288_60	Structural annotation	PF12708, TIGR03808, COG5434	NA	NA
UHGV-1897288_64	PHROG	phrog_21471	NA	unknown function
UHGV-1897288_64	eggNOG-mapper	743719.PaelaDRAFT_3616	NA	NA