UHGV-1907585

Genome information

Genome length 39,092 bps

CDS count 75

Completeness 99.90% (high-quality)

geNomad score 0.9755

Prediction confidence Confident

Genome information
Genome ID	UHGV-1907585
vOTU ID	vOTU-065225
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300000294\|EM326_1000366\|provirus_109669_148760
BioSample	NA
Country	Ireland
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9755
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.03
Jumbo phage	No

Genome content
Genome length	39,092 bps
GC content	28.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	92.76%
Average CDS length	487.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1907585_1	KOfam	K14059	int; integrase	NA
UHGV-1907585_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1907585_1	UniRef90	UniRef90_UPI001666CEF0	site-specific integrase	NA
UHGV-1907585_1	eggNOG-mapper	428125.CLOLEP_01837	Belongs to the 'phage' integrase family	NA
UHGV-1907585_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1907585_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1907585_2	KOfam	K14059	int; integrase	NA
UHGV-1907585_2	PHROG	phrog_1	integrase	integration and excision
UHGV-1907585_2	UniRef90	UniRef90_UPI0015C5C81A	site-specific integrase	NA
UHGV-1907585_2	eggNOG-mapper	411467.BACCAP_03111	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1907585_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1907585_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1907585_2	Structural annotation	PF13102, MF_01807, NF007246, COG4974	NA	NA
UHGV-1907585_3	Structural annotation	PF15968	NA	NA
UHGV-1907585_4	Structural annotation	PF20505, MF_00194, NF001462, COG2974	NA	NA
UHGV-1907585_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1907585_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1907585_5	UniRef90	UniRef90_A0A1Q6LHM3	HTH cro/C1-type domain-containing protein	NA
UHGV-1907585_5	eggNOG-mapper	1347392.CCEZ01000062_gene683	transcriptional regulator	NA
UHGV-1907585_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1907585_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1907585_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1907585_5	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-1907585_6	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1907585_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1907585_6	UniRef90	UniRef90_A0A1Q6LH13	HTH cro/C1-type domain-containing protein	NA
UHGV-1907585_6	eggNOG-mapper	556261.HMPREF0240_01212	An automated process has identified a potential problem with this gene model	NA
UHGV-1907585_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1907585_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1907585_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1907585_7	Structural annotation	PF09035, NF040990, COG3311	NA	NA
UHGV-1907585_12	PHROG	phrog_674	NA	unknown function
UHGV-1907585_12	UniRef90	UniRef90_A0A7X9AE52	NA	NA
UHGV-1907585_12	eggNOG-mapper	665956.HMPREF1032_03103	NA	NA
UHGV-1907585_12	Pfam	PF07083	NA	DUF1351
UHGV-1907585_12	Structural annotation	PF07083	NA	NA
UHGV-1907585_13	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1907585_13	UniRef90	UniRef90_R7FH02	Phage recombination protein Bet	NA
UHGV-1907585_13	eggNOG-mapper	1031288.AXAA01000044_gene1973	Phage recombination protein Bet	NA
UHGV-1907585_13	Pfam	PF03837	RecT family	RecT
UHGV-1907585_13	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-1907585_13	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1907585_13	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-1907585_14	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1907585_14	UniRef90	UniRef90_R5PYB3	Metallo-beta-lactamase domain protein	NA
UHGV-1907585_14	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-1907585_14	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1907585_14	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1907585_14	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-1907585_16	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1907585_17	PHROG	phrog_7566	NA	unknown function
UHGV-1907585_17	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-1907585_19	PHROG	phrog_16304	NA	unknown function
UHGV-1907585_19	UniRef90	UniRef90_A0A315Y0M2	NA	NA
UHGV-1907585_19	eggNOG-mapper	33035.JPJF01000071_gene4467	NA	NA
UHGV-1907585_19	Pfam	PF19808	NA	DUF6291
UHGV-1907585_19	Structural annotation	PF19808	NA	NA
UHGV-1907585_20	PHROG	phrog_15768	NA	unknown function
UHGV-1907585_20	eggNOG-mapper	411473.RUMCAL_00873	Phage replisome organizer, N-terminal domain protein	NA
UHGV-1907585_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1907585_21	PHROG	phrog_2289	helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1907585_21	Structural annotation	PF11417	NA	NA
UHGV-1907585_22	PHROG	phrog_4973	NA	unknown function
UHGV-1907585_22	UniRef90	UniRef90_A0A843HM15	Helix-turn-helix domain-containing protein	NA
UHGV-1907585_22	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1907585_22	Structural annotation	PF14090, NF040939, COG5625	NA	NA
UHGV-1907585_23	eggNOG-mapper	994573.T472_0213975	NA	NA
UHGV-1907585_23	Structural annotation	NF007260	NA	NA
UHGV-1907585_25	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1907585_25	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1907585_25	UniRef90	UniRef90_A0A6M0L9L6	Methyltransferase	NA
UHGV-1907585_25	eggNOG-mapper	1449342.JQMR01000001_gene1025	DNA modification methylase DNA replication, recombination, and repair	NA
UHGV-1907585_25	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1907585_25	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1907585_25	COG	COG0863	DNA modification methylase	NA
UHGV-1907585_25	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1907585_26	Structural annotation	PF15188	NA	NA
UHGV-1907585_27	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1907585_27	UniRef90	UniRef90_A0A7C9LJY9	NA	NA
UHGV-1907585_27	eggNOG-mapper	1121105.ATXL01000006_gene1363	NA	NA
UHGV-1907585_27	Pfam	PF06356	NA	DUF1064
UHGV-1907585_27	Structural annotation	PF06356	NA	NA
UHGV-1907585_28	Structural annotation	PF09871, TIGR00739, COG4014	NA	NA
UHGV-1907585_30	Structural annotation	TIGR01671	NA	NA
UHGV-1907585_31	Structural annotation	PF18337, MF_00754, TIGR00739, COG1862	NA	NA
UHGV-1907585_32	PHROG	phrog_774	NA	unknown function
UHGV-1907585_32	Structural annotation	PF02403	NA	NA
UHGV-1907585_33	Structural annotation	PF15781	NA	NA
UHGV-1907585_37	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-1907585_39	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-1907585_42	PHROG	phrog_1233	NA	unknown function
UHGV-1907585_43	eggNOG-mapper	697303.Thewi_1140	NA	NA
UHGV-1907585_44	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1907585_44	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1907585_44	UniRef90	UniRef90_R6DVT6	Phage terminase large subunit PBSX family	NA
UHGV-1907585_44	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-1907585_44	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1907585_44	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1907585_44	COG	COG1783	Phage terminase large subunit	NA
UHGV-1907585_44	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1907585_45	PHROG	phrog_533	portal protein	head and packaging
UHGV-1907585_45	UniRef90	UniRef90_R6Y8H1	Minor capsid protein	NA
UHGV-1907585_45	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-1907585_45	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1907585_47	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1907585_47	UniRef90	UniRef90_R6YG84	CdiA_C domain-containing protein	NA
UHGV-1907585_47	eggNOG-mapper	1462526.BN990_03872	Phage minor capsid protein 2	NA
UHGV-1907585_47	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1907585_47	COG	COG2369	NA	NA
UHGV-1907585_47	Structural annotation	PF06152	NA	NA
UHGV-1907585_49	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1907585_49	UniRef90	UniRef90_R6XV28	Phage minor structural protein GP20	NA
UHGV-1907585_49	eggNOG-mapper	1111454.HMPREF1250_0176	Phage minor structural protein GP20	NA
UHGV-1907585_49	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1907585_49	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-1907585_50	PHROG	phrog_544	major head protein	head and packaging
UHGV-1907585_50	UniRef90	UniRef90_UPI000E5CD0B7	N4-gp56 family major capsid protein	NA
UHGV-1907585_50	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-1907585_50	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1907585_50	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1907585_51	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1907585_51	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-1907585_52	PHROG	phrog_3366	NA	unknown function
UHGV-1907585_52	eggNOG-mapper	632245.CLP_1651	NA	NA
UHGV-1907585_52	Pfam	PF20536	NA	DUF6751
UHGV-1907585_52	Structural annotation	PF20536, COG5614	NA	NA
UHGV-1907585_53	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1907585_53	UniRef90	UniRef90_A0A174E6U4	Minor capsid	NA
UHGV-1907585_53	eggNOG-mapper	1304866.K413DRAFT_3041	NA	NA
UHGV-1907585_53	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1907585_53	Structural annotation	PF11114	NA	NA
UHGV-1907585_54	PHROG	phrog_3266	tail completion	connector
UHGV-1907585_54	UniRef90	UniRef90_UPI000DCF807F	chloramphenicol resistance protein	NA
UHGV-1907585_54	eggNOG-mapper	999411.HMPREF1092_03317	NA	NA
UHGV-1907585_54	Structural annotation	PF12691	NA	NA
UHGV-1907585_55	PHROG	phrog_3099	NA	unknown function
UHGV-1907585_55	eggNOG-mapper	469596.HMPREF9488_01325	NA	NA
UHGV-1907585_55	Structural annotation	PF09393, TIGR02126, COG5437	NA	NA
UHGV-1907585_56	Pfam	PF07719	Tetratricopeptide repeat	TPR_2
UHGV-1907585_56	Pfam	PF18740	EC042_2821-like Restriction Endonuclease-like domain	EC042_2821
UHGV-1907585_56	COG	COG2956	Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain	NA
UHGV-1907585_57	UniRef90	UniRef90_A0A552V736	CopG family transcriptional regulator	NA
UHGV-1907585_57	eggNOG-mapper	1105031.HMPREF1141_0419	NA	NA
UHGV-1907585_57	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-1907585_59	PHROG	phrog_15609	NA	unknown function
UHGV-1907585_59	UniRef90	UniRef90_A0A553KG24	NA	NA
UHGV-1907585_59	eggNOG-mapper	545243.BAEV01000033_gene586	NA	NA
UHGV-1907585_59	Pfam	PF11300	NA	DUF3102
UHGV-1907585_59	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-1907585_59	Structural annotation	PF11300, NF038070	NA	NA
UHGV-1907585_60	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1907585_60	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1907585_60	Structural annotation	PF10552	NA	NA
UHGV-1907585_62	PHROG	phrog_706	NA	unknown function
UHGV-1907585_62	UniRef90	UniRef90_UPI00067E77F7	Gp15 family bacteriophage protein	NA
UHGV-1907585_62	eggNOG-mapper	469596.HMPREF9488_01327	Bacteriophage Gp15 protein	NA
UHGV-1907585_62	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1907585_62	Structural annotation	PF06854	NA	NA
UHGV-1907585_63	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1907585_63	eggNOG-mapper	1280692.AUJL01000027_gene2150	phage tail tape measure protein	NA
UHGV-1907585_63	COG	COG1511	NA	NA
UHGV-1907585_63	Structural annotation	PF09486, TIGR02559	NA	NA
UHGV-1907585_64	PHROG	phrog_1194	NA	unknown function
UHGV-1907585_64	Structural annotation	PF20458, TIGR01633, COG4718	NA	NA
UHGV-1907585_65	eggNOG-mapper	469596.HMPREF9488_01330	NA	NA
UHGV-1907585_65	Structural annotation	PF05113, PF09327, NF033848, COG3500	NA	NA
UHGV-1907585_67	PHROG	phrog_5668	tail fiber protein	tail
UHGV-1907585_67	eggNOG-mapper	573061.Clocel_0796	Phage minor structural protein	NA
UHGV-1907585_67	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1907585_67	COG	COG4926	Phage-related protein	NA
UHGV-1907585_68	Structural annotation	PF03906	NA	NA
UHGV-1907585_73	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-1907585_73	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-1907585_73	UniRef90	UniRef90_R7M5C6	Peptidase M23	NA
UHGV-1907585_73	eggNOG-mapper	511680.BUTYVIB_00396	peptidase	NA
UHGV-1907585_73	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-1907585_73	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-1907585_73	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-1907585_74	PHROG	phrog_1281	NA	unknown function
UHGV-1907585_74	UniRef90	UniRef90_UPI0006C50E71	NA	NA
UHGV-1907585_74	eggNOG-mapper	864069.MicloDRAFT_00059470	Phage-associated protein	NA
UHGV-1907585_74	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-1907585_74	COG	COG3600	NA	NA
UHGV-1907585_74	Structural annotation	PF13274, COG3600	NA	NA
UHGV-1907585_75	PHROG	phrog_8366	NA	unknown function
UHGV-1907585_75	eggNOG-mapper	1215092.PA6_102_00020	NA	NA