UHGV-1914681

Genome information

Genome length 36,235 bps

CDS count 69

Completeness 98.76% (high-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-1914681
vOTU ID	vOTU-010333
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300000281\|EM227_1000267\|provirus_40424_76658
BioSample	NA
Country	Ireland
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.76% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.3
Jumbo phage	No

Genome content
Genome length	36,235 bps
GC content	28.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	92.59%
Average CDS length	489.44 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1914681_1	KOfam	K14059	int; integrase	NA
UHGV-1914681_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1914681_1	UniRef90	UniRef90_R7NSV6	Tyr recombinase domain-containing protein	NA
UHGV-1914681_1	eggNOG-mapper	861530.ALOZ01000074_gene994	Arm DNA-binding domain	NA
UHGV-1914681_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1914681_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1914681_1	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1914681_2	PHROG	phrog_87	metallo-protease	other
UHGV-1914681_2	UniRef90	UniRef90_R5PN39	NA	NA
UHGV-1914681_2	eggNOG-mapper	396513.SCA_0465	NA	NA
UHGV-1914681_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1914681_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1914681_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1914681_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1914681_3	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1914681_3	UniRef90	UniRef90_A0A1Q6LE53	HTH cro/C1-type domain-containing protein	NA
UHGV-1914681_3	eggNOG-mapper	1157490.EL26_15215	sequence-specific DNA binding	NA
UHGV-1914681_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1914681_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1914681_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1914681_3	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1914681_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1914681_4	UniRef90	UniRef90_A0A1Q6LE94	HTH cro/C1-type domain-containing protein	NA
UHGV-1914681_4	eggNOG-mapper	293826.Amet_2389	sequence-specific DNA binding	NA
UHGV-1914681_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1914681_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1914681_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1914681_7	PHROG	phrog_14088	NA	unknown function
UHGV-1914681_7	eggNOG-mapper	1256908.HMPREF0373_00648	NA	NA
UHGV-1914681_8	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1914681_8	UniRef90	UniRef90_N1ZZ26	NA	NA
UHGV-1914681_8	eggNOG-mapper	1235802.C823_04729	NA	NA
UHGV-1914681_8	Pfam	PF13643	NA	DUF4145
UHGV-1914681_8	Structural annotation	PF13643	NA	NA
UHGV-1914681_11	PHROG	phrog_674	NA	unknown function
UHGV-1914681_11	UniRef90	UniRef90_A0A7X9AE52	NA	NA
UHGV-1914681_11	eggNOG-mapper	665956.HMPREF1032_03103	NA	NA
UHGV-1914681_11	Pfam	PF07083	NA	DUF1351
UHGV-1914681_11	Structural annotation	PF07083	NA	NA
UHGV-1914681_12	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1914681_12	UniRef90	UniRef90_R7FH02	Phage recombination protein Bet	NA
UHGV-1914681_12	eggNOG-mapper	1031288.AXAA01000044_gene1973	Phage recombination protein Bet	NA
UHGV-1914681_12	Pfam	PF03837	RecT family	RecT
UHGV-1914681_12	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-1914681_12	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1914681_12	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-1914681_13	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1914681_13	UniRef90	UniRef90_R5PYB3	Metallo-beta-lactamase domain protein	NA
UHGV-1914681_13	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-1914681_13	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1914681_13	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1914681_13	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-1914681_14	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1914681_14	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-1914681_14	eggNOG-mapper	1399942.U3PCT8_9CAUD	NA	NA
UHGV-1914681_14	Structural annotation	PF05772	NA	NA
UHGV-1914681_15	PHROG	phrog_7566	NA	unknown function
UHGV-1914681_15	UniRef90	UniRef90_A0A417QFX9	Phosphoenolpyruvate carboxykinase	NA
UHGV-1914681_15	eggNOG-mapper	411902.CLOBOL_05695	NA	NA
UHGV-1914681_17	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-1914681_17	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1914681_17	UniRef90	UniRef90_A0A3B8SUV3	DnaB_2 domain-containing protein	NA
UHGV-1914681_17	eggNOG-mapper	642492.Clole_1479	DnaD domain protein	NA
UHGV-1914681_17	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1914681_17	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-1914681_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1914681_17	Structural annotation	PF07261, PF09681, MF_01177, TIGR01446, TIGR01714, COG3935	NA	NA
UHGV-1914681_19	PHROG	phrog_1123	NA	unknown function
UHGV-1914681_19	UniRef90	UniRef90_UPI0012E37870	DNA gyrase	NA
UHGV-1914681_19	eggNOG-mapper	445972.ANACOL_03346	NA	NA
UHGV-1914681_19	Structural annotation	PF02002, TIGR03433, COG1695	NA	NA
UHGV-1914681_22	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1914681_22	UniRef90	UniRef90_A0A7C9LJY9	NA	NA
UHGV-1914681_22	eggNOG-mapper	1121105.ATXL01000006_gene1363	NA	NA
UHGV-1914681_22	Pfam	PF06356	NA	DUF1064
UHGV-1914681_22	Structural annotation	PF06356	NA	NA
UHGV-1914681_23	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-1914681_24	PHROG	phrog_19831	NA	unknown function
UHGV-1914681_25	PHROG	phrog_98	NA	unknown function
UHGV-1914681_25	UniRef90	UniRef90_A0A5P8M744	YopX domain-containing protein	NA
UHGV-1914681_25	eggNOG-mapper	888055.HMPREF9015_01088	YopX protein	NA
UHGV-1914681_25	Pfam	PF09643	YopX protein	YopX
UHGV-1914681_25	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1914681_26	Pfam	PF09643	YopX protein	YopX
UHGV-1914681_28	PHROG	phrog_1238	phosphoheptose isomerase	moron, auxiliary metabolic gene and host takeover
UHGV-1914681_28	UniRef90	UniRef90_A0A7Z0EIA5	Rhodanese-related sulfurtransferase	NA
UHGV-1914681_28	eggNOG-mapper	33898.JRHJ01000076_gene397	NA	NA
UHGV-1914681_28	Structural annotation	TIGR01689	NA	NA
UHGV-1914681_29	eggNOG-mapper	397290.C810_01505	NA	NA
UHGV-1914681_32	Structural annotation	PF06401	NA	NA
UHGV-1914681_37	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-1914681_38	PHROG	phrog_1048	NA	unknown function
UHGV-1914681_38	UniRef90	UniRef90_UPI001D02F1DD	NA	NA
UHGV-1914681_38	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-1914681_38	Pfam	PF11195	NA	DUF2829
UHGV-1914681_38	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-1914681_38	Structural annotation	PF11195	NA	NA
UHGV-1914681_40	PHROG	phrog_1233	NA	unknown function
UHGV-1914681_40	UniRef90	UniRef90_R7IWF8	Peptidase_M78 domain-containing protein	NA
UHGV-1914681_40	Structural annotation	PF13058	NA	NA
UHGV-1914681_41	eggNOG-mapper	697303.Thewi_1140	NA	NA
UHGV-1914681_42	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1914681_42	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1914681_42	UniRef90	UniRef90_R6DVT6	Phage terminase large subunit PBSX family	NA
UHGV-1914681_42	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-1914681_42	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1914681_42	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1914681_42	COG	COG1783	Phage terminase large subunit	NA
UHGV-1914681_42	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1914681_43	PHROG	phrog_533	portal protein	head and packaging
UHGV-1914681_43	UniRef90	UniRef90_R6Y8H1	Minor capsid protein	NA
UHGV-1914681_43	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-1914681_43	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1914681_44	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1914681_44	UniRef90	UniRef90_R6YG84	CdiA_C domain-containing protein	NA
UHGV-1914681_44	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-1914681_44	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1914681_44	Pfam	PF21814	NA	DUF6883
UHGV-1914681_44	COG	COG2369	NA	NA
UHGV-1914681_44	Structural annotation	PF06152, PF21814	NA	NA
UHGV-1914681_45	UniRef90	UniRef90_A0A4R4FEG5	NA	NA
UHGV-1914681_45	eggNOG-mapper	1200557.JHWV01000022_gene2459	NA	NA
UHGV-1914681_45	Structural annotation	PF02699, MF_00369, TIGR00739, COG1862	NA	NA
UHGV-1914681_46	Structural annotation	PF09871, TIGR00739, COG1862	NA	NA
UHGV-1914681_47	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1914681_47	UniRef90	UniRef90_R6XV28	Phage minor structural protein GP20	NA
UHGV-1914681_47	eggNOG-mapper	1399941.U3PIU5_9CAUD	Phage minor structural protein GP20	NA
UHGV-1914681_47	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1914681_47	Structural annotation	PF06810	NA	NA
UHGV-1914681_48	PHROG	phrog_283	major head protein	head and packaging
UHGV-1914681_48	UniRef90	UniRef90_A0A173REC9	p22 coat protein-gene protein 5	NA
UHGV-1914681_48	eggNOG-mapper	411461.DORFOR_01167	P22 coat protein - gene protein 5	NA
UHGV-1914681_48	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-1914681_48	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1914681_49	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1914681_49	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-1914681_50	PHROG	phrog_3366	NA	unknown function
UHGV-1914681_50	eggNOG-mapper	632245.CLP_1651	NA	NA
UHGV-1914681_50	Pfam	PF20536	NA	DUF6751
UHGV-1914681_50	Structural annotation	PF20536, COG5614	NA	NA
UHGV-1914681_51	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1914681_51	UniRef90	UniRef90_A0A1G4WU41	Minor capsid protein	NA
UHGV-1914681_51	eggNOG-mapper	411902.CLOBOL_00131	Minor capsid protein	NA
UHGV-1914681_51	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1914681_51	Structural annotation	PF11114	NA	NA
UHGV-1914681_52	PHROG	phrog_3266	tail completion	connector
UHGV-1914681_52	UniRef90	UniRef90_UPI000DCF807F	chloramphenicol resistance protein	NA
UHGV-1914681_52	eggNOG-mapper	999411.HMPREF1092_03317	NA	NA
UHGV-1914681_52	Structural annotation	PF12691	NA	NA
UHGV-1914681_53	PHROG	phrog_3099	NA	unknown function
UHGV-1914681_53	eggNOG-mapper	469596.HMPREF9488_01325	NA	NA
UHGV-1914681_53	Structural annotation	PF09393, TIGR02126, COG5437	NA	NA
UHGV-1914681_54	PHROG	phrog_14275	NA	unknown function
UHGV-1914681_54	UniRef90	UniRef90_R6Y193	zinc_ribbon_2 domain-containing protein	NA
UHGV-1914681_54	eggNOG-mapper	1031288.AXAA01000044_gene1983	NA	NA
UHGV-1914681_54	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-1914681_54	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-1914681_54	Structural annotation	PF07233, NF038353, COG5633	NA	NA
UHGV-1914681_56	PHROG	phrog_706	NA	unknown function
UHGV-1914681_56	UniRef90	UniRef90_UPI00067E77F7	Gp15 family bacteriophage protein	NA
UHGV-1914681_56	eggNOG-mapper	469596.HMPREF9488_01327	Bacteriophage Gp15 protein	NA
UHGV-1914681_56	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1914681_56	Structural annotation	PF06854	NA	NA
UHGV-1914681_57	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1914681_57	eggNOG-mapper	1280692.AUJL01000027_gene2150	phage tail tape measure protein	NA
UHGV-1914681_57	COG	COG1511	NA	NA
UHGV-1914681_57	Structural annotation	PF09486, TIGR02559	NA	NA
UHGV-1914681_58	PHROG	phrog_1194	NA	unknown function
UHGV-1914681_58	Structural annotation	PF20458, TIGR01633, COG4718	NA	NA
UHGV-1914681_59	eggNOG-mapper	469596.HMPREF9488_01330	NA	NA
UHGV-1914681_59	Structural annotation	PF05113, PF09327, NF033848, COG3500	NA	NA
UHGV-1914681_61	PHROG	phrog_5668	tail fiber protein	tail
UHGV-1914681_61	eggNOG-mapper	573061.Clocel_0796	Phage minor structural protein	NA
UHGV-1914681_61	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1914681_61	COG	COG4926	Phage-related protein	NA
UHGV-1914681_62	Structural annotation	PF03906	NA	NA
UHGV-1914681_64	PHROG	phrog_13632	NA	unknown function
UHGV-1914681_64	eggNOG-mapper	1399942.U3PIX4_9CAUD	NA	NA
UHGV-1914681_65	PHROG	phrog_881	holin	lysis
UHGV-1914681_65	UniRef90	UniRef90_A0A6I2QY13	Holin	NA
UHGV-1914681_65	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-1914681_65	Structural annotation	PF16938, COG3237	NA	NA
UHGV-1914681_68	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-1914681_68	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-1914681_68	UniRef90	UniRef90_R7M5C6	Peptidase M23	NA
UHGV-1914681_68	eggNOG-mapper	511680.BUTYVIB_00396	peptidase	NA
UHGV-1914681_68	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-1914681_68	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-1914681_68	Structural annotation	PF01551, NF040883, COG0739	NA	NA