UHGV-1920528

Genome information

Genome length 31,100 bps

CDS count 50

Completeness 99.90% (high-quality)

geNomad score 0.9613

Prediction confidence Confident

Genome information
Genome ID	UHGV-1920528
vOTU ID	vOTU-065892
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300007210\|Ga0103359_100045\|provirus_76699_115899
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	Provirus
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9613
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	2.22
Jumbo phage	No

Genome content
Genome length	31,100 bps
GC content	40.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.75%
Average CDS length	573.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1920528_1	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-1920528_1	UniRef90	UniRef90_UPI000E5D2F29	Abi family protein	NA
UHGV-1920528_1	eggNOG-mapper	626523.GCWU000342_01051	Abi-like protein	NA
UHGV-1920528_1	PADLOC	AbiD	AbiD	Abi
UHGV-1920528_1	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-1920528_1	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-1920528_1	Structural annotation	PF07751, COG4823	NA	NA
UHGV-1920528_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1920528_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1920528_3	UniRef90	UniRef90_UPI00156FB04E	helix-turn-helix domain-containing protein	NA
UHGV-1920528_3	eggNOG-mapper	1235790.C805_00362	Helix-turn-helix XRE-family like proteins	NA
UHGV-1920528_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1920528_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1920528_3	Structural annotation	PF01381, MF_02017, NF041951, COG1396	NA	NA
UHGV-1920528_4	UniRef90	UniRef90_A0A355TLU7	NA	NA
UHGV-1920528_4	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-1920528_4	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-1920528_4	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-1920528_6	PHROG	phrog_20330	NA	unknown function
UHGV-1920528_6	eggNOG-mapper	1094508.Tsac_2450	NA	NA
UHGV-1920528_9	Structural annotation	PF09486, TIGR03090, COG5420	NA	NA
UHGV-1920528_11	PHROG	phrog_585	NA	unknown function
UHGV-1920528_11	UniRef90	UniRef90_UPI00035CA235	NA	NA
UHGV-1920528_11	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-1920528_11	Pfam	PF10711	NA	DUF2513
UHGV-1920528_11	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-1920528_12	Structural annotation	PF18066, NF007780, COG1544	NA	NA
UHGV-1920528_15	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-1920528_15	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-1920528_16	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-1920528_17	PHROG	phrog_8470	NA	unknown function
UHGV-1920528_17	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-1920528_17	eggNOG-mapper	1235792.C808_00066	PcfJ-like protein	NA
UHGV-1920528_17	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1920528_17	Structural annotation	PF14284	NA	NA
UHGV-1920528_18	PHROG	phrog_15077	NA	unknown function
UHGV-1920528_18	UniRef90	UniRef90_UPI001D0741A0	NA	NA
UHGV-1920528_18	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-1920528_18	Structural annotation	PF11300, NF033725	NA	NA
UHGV-1920528_19	Structural annotation	NF011508	NA	NA
UHGV-1920528_20	Structural annotation	PF17384, MF_00436, NF033216, COG4568	NA	NA
UHGV-1920528_21	UniRef90	UniRef90_A0A0F0C7A4	NA	NA
UHGV-1920528_21	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-1920528_23	eggNOG-mapper	483218.BACPEC_01162	sequence-specific DNA binding	NA
UHGV-1920528_23	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1920528_24	UniRef90	UniRef90_A0A355TJG3	ASCH domain-containing protein	NA
UHGV-1920528_24	eggNOG-mapper	397290.C810_00411	ASCH domain	NA
UHGV-1920528_24	Pfam	PF04266	ASCH domain	ASCH
UHGV-1920528_24	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1920528_24	Structural annotation	PF08819, MF_00684, NF003443, COG4933	NA	NA
UHGV-1920528_28	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1920528_28	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-1920528_28	eggNOG-mapper	411902.CLOBOL_03891	NA	NA
UHGV-1920528_28	Structural annotation	PF21578	NA	NA
UHGV-1920528_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1920528_29	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-1920528_29	eggNOG-mapper	755731.Clo1100_3798	NA	NA
UHGV-1920528_29	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-1920528_30	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1920528_30	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1920528_30	UniRef90	UniRef90_A0A0M6WIX4	HNHc domain-containing protein	NA
UHGV-1920528_30	eggNOG-mapper	1405.DJ92_863	HNH endonuclease	NA
UHGV-1920528_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1920528_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1920528_31	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1920528_31	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-1920528_31	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-1920528_31	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1920528_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1920528_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1920528_32	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-1920528_32	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-1920528_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1920528_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1920528_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1920528_32	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1920528_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-1920528_33	UniRef90	UniRef90_UPI00156D5DC9	phage portal protein	NA
UHGV-1920528_33	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-1920528_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1920528_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1920528_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1920528_34	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1920528_34	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1920528_34	UniRef90	UniRef90_A0A0M6WHX9	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1920528_34	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-1920528_34	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1920528_34	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1920528_34	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1920528_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-1920528_35	UniRef90	UniRef90_UPI00156F222D	phage major capsid protein	NA
UHGV-1920528_35	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-1920528_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1920528_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1920528_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1920528_35	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-1920528_37	UniRef90	UniRef90_UPI00189B1559	phage head closure protein	NA
UHGV-1920528_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1920528_38	Structural annotation	PF05657	NA	NA
UHGV-1920528_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1920528_39	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-1920528_39	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1920528_39	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-1920528_40	PHROG	phrog_88	major tail protein	tail
UHGV-1920528_40	UniRef90	UniRef90_A0A1Q9J4Y1	Phage tail protein	NA
UHGV-1920528_40	eggNOG-mapper	1487921.DP68_11355	phage major tail protein	NA
UHGV-1920528_40	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1920528_40	COG	COG5492	NA	NA
UHGV-1920528_40	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1920528_42	PHROG	phrog_23464	NA	unknown function
UHGV-1920528_42	eggNOG-mapper	1232452.BAIB02000007_gene1616	phage tail tape measure protein	NA
UHGV-1920528_42	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1920528_43	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1920528_43	UniRef90	UniRef90_A0A350VIV2	Phage tail protein	NA
UHGV-1920528_43	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-1920528_43	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1920528_43	COG	COG4722	Phage-related protein YomH	NA
UHGV-1920528_43	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1920528_44	PHROG	phrog_13289	tail protein	tail
UHGV-1920528_44	UniRef90	UniRef90_A0A0M6WI67	Prophage_tail domain-containing protein	NA
UHGV-1920528_44	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-1920528_44	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1920528_44	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1920528_44	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-1920528_44	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1920528_45	PHROG	phrog_11037	NA	unknown function
UHGV-1920528_45	UniRef90	UniRef90_A0A0M6WKQ1	Phage_lysozyme2 domain-containing protein	NA
UHGV-1920528_45	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-1920528_45	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1920528_45	Structural annotation	PF18013	NA	NA
UHGV-1920528_46	eggNOG-mapper	1235798.C817_04596	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-1920528_46	COG	COG4675	Phage tail collar domain	NA
UHGV-1920528_47	PHROG	phrog_15594	NA	unknown function
UHGV-1920528_47	eggNOG-mapper	862969.SCI_1223	NA	NA
UHGV-1920528_47	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-1920528_48	COG	COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	NA
UHGV-1920528_49	KOfam	K07486	K07486; transposase	NA
UHGV-1920528_49	PHROG	phrog_2199	transposase	integration and excision
UHGV-1920528_49	UniRef90	UniRef90_A0A0J9CBI6	DEDD_Tnp_IS110 domain-containing protein	NA
UHGV-1920528_49	eggNOG-mapper	742765.HMPREF9457_03059	COG COG3547 Transposase and inactivated derivatives	NA
UHGV-1920528_49	Pfam	PF01548	Transposase	DEDD_Tnp_IS110
UHGV-1920528_49	Pfam	PF02371	Transposase IS116/IS110/IS902 family	Transposase_20
UHGV-1920528_49	NCBIFam	NF033542.1	IS110 family transposase	NA
UHGV-1920528_49	COG	COG3547	Transposase	NA
UHGV-1920528_49	Structural annotation	PF01548, PF02371, MF_00651, NF033542, COG3547	NA	NA
UHGV-1920528_50	eggNOG-mapper	483218.BACPEC_03086	NA	NA