UHGV-1920910

Genome information

Genome length 61,839 bps

CDS count 96

Completeness 78.77% (medium-quality)

geNomad score 0.9685

Prediction confidence Confident

Genome information
Genome ID	UHGV-1920910
vOTU ID	vOTU-037575
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300007705\|Ga0105636_100107\|provirus_33284_100975
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.77% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9685
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.22
Jumbo phage	No

Genome content
Genome length	61,839 bps
GC content	39.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	96
CDS density	91.45%
Average CDS length	591.44 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1920910_2	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1920910_2	PHROG	phrog_1	integrase	integration and excision
UHGV-1920910_2	UniRef90	UniRef90_A0A3E4R446	Site-specific integrase	NA
UHGV-1920910_2	eggNOG-mapper	742727.HMPREF9447_04802	Arm DNA-binding domain	NA
UHGV-1920910_2	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-1920910_2	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1920910_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1920910_2	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1920910_2	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1920910_4	PHROG	phrog_1281	NA	unknown function
UHGV-1920910_4	UniRef90	UniRef90_UPI001106B68D	NA	NA
UHGV-1920910_4	eggNOG-mapper	393921.HQ45_06855	Phage-associated protein	NA
UHGV-1920910_4	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-1920910_4	COG	COG3600	NA	NA
UHGV-1920910_4	Structural annotation	PF13274, COG3600	NA	NA
UHGV-1920910_5	UniRef90	UniRef90_F3QSP6	Conserved domain protein	NA
UHGV-1920910_5	eggNOG-mapper	762982.HMPREF9442_01206	NA	NA
UHGV-1920910_6	PHROG	phrog_38431	NA	unknown function
UHGV-1920910_6	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-1920910_6	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-1920910_7	PHROG	phrog_34053	NA	unknown function
UHGV-1920910_8	PHROG	phrog_28898	NA	unknown function
UHGV-1920910_8	UniRef90	UniRef90_R5UN07	Conserved domain protein	NA
UHGV-1920910_8	eggNOG-mapper	762982.HMPREF9442_01203	NA	NA
UHGV-1920910_8	Structural annotation	PF10781	NA	NA
UHGV-1920910_9	PHROG	phrog_31654	NA	unknown function
UHGV-1920910_9	eggNOG-mapper	762968.HMPREF9441_00554	NA	NA
UHGV-1920910_10	PHROG	phrog_16490	NA	unknown function
UHGV-1920910_10	UniRef90	UniRef90_A0A7M1RSH1	Outer capsid protein/viral fiber	NA
UHGV-1920910_10	eggNOG-mapper	762982.HMPREF9442_01201	NA	NA
UHGV-1920910_11	UniRef90	UniRef90_A0A8D9UI10	Chromosomal replication initiator protein	NA
UHGV-1920910_11	eggNOG-mapper	762982.HMPREF9442_01200	Bacterial dnaA protein helix-turn-helix	NA
UHGV-1920910_11	Structural annotation	PF08299, NF004688	NA	NA
UHGV-1920910_12	PHROG	phrog_26448	NA	unknown function
UHGV-1920910_12	eggNOG-mapper	1121101.HMPREF1532_02615	NA	NA
UHGV-1920910_12	Pfam	PF20647	NA	DUF6808
UHGV-1920910_12	Structural annotation	PF20647	NA	NA
UHGV-1920910_14	Structural annotation	PF17994, NF038128	NA	NA
UHGV-1920910_15	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-1920910_15	PHROG	phrog_894	endolysin	lysis
UHGV-1920910_15	UniRef90	UniRef90_I9R1E3	Peptidase_M15_3 domain-containing protein	NA
UHGV-1920910_15	eggNOG-mapper	357276.EL88_22665	Peptidase M15	NA
UHGV-1920910_15	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-1920910_15	COG	COG3108	NA	NA
UHGV-1920910_15	Structural annotation	PF08291, COG3108	NA	NA
UHGV-1920910_16	UniRef90	UniRef90_UPI001F19B89A	phage holin family protein	NA
UHGV-1920910_16	eggNOG-mapper	1121100.JCM6294_559	NA	NA
UHGV-1920910_16	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1920910_16	Structural annotation	PF05105, NF035928, COG4824	NA	NA
UHGV-1920910_17	UniRef90	UniRef90_A0A372UWS1	NA	NA
UHGV-1920910_17	eggNOG-mapper	411479.BACUNI_00733	NA	NA
UHGV-1920910_17	Pfam	PF14301	NA	DUF4376
UHGV-1920910_17	Structural annotation	PF14301	NA	NA
UHGV-1920910_18	eggNOG-mapper	357276.EL88_11200	lipolytic protein G-D-S-L family	NA
UHGV-1920910_18	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-1920910_19	Structural annotation	PF16640	NA	NA
UHGV-1920910_22	eggNOG-mapper	693979.Bache_2810	NA	NA
UHGV-1920910_23	Structural annotation	PF16389, NF011785	NA	NA
UHGV-1920910_24	UniRef90	UniRef90_F3PDX9	Conserved domain protein	NA
UHGV-1920910_24	eggNOG-mapper	762984.HMPREF9445_00187	NA	NA
UHGV-1920910_24	Structural annotation	PF06197, COG3371	NA	NA
UHGV-1920910_25	PHROG	phrog_38044	NA	unknown function
UHGV-1920910_25	eggNOG-mapper	762968.HMPREF9441_00566	cellulase activity	NA
UHGV-1920910_25	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1920910_25	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1920910_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-1920910_27	UniRef90	UniRef90_A0A5P0X070	Phage portal protein	NA
UHGV-1920910_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1920910_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1920910_29	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1920910_29	UniRef90	UniRef90_A0A415SRG6	DOD-type homing endonuclease domain-containing protein	NA
UHGV-1920910_29	eggNOG-mapper	1121286.AUMT01000013_gene2660	Terminase-like family	NA
UHGV-1920910_29	COG	COG5362	Phage terminase large subunit	NA
UHGV-1920910_29	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1920910_31	Structural annotation	PF21430	NA	NA
UHGV-1920910_32	UniRef90	UniRef90_A0A8B2AWS5	Major capsid protein	NA
UHGV-1920910_32	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1920910_32	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-1920910_34	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1920910_35	PHROG	phrog_5377	NA	unknown function
UHGV-1920910_36	Structural annotation	PF05561, NF040576, COG3167	NA	NA
UHGV-1920910_37	PHROG	phrog_6767	NA	unknown function
UHGV-1920910_37	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1920910_38	Structural annotation	PF06894, TIGR01674	NA	NA
UHGV-1920910_40	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-1920910_40	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-1920910_40	UniRef90	UniRef90_D1K595	TMP_3 domain-containing protein	NA
UHGV-1920910_40	eggNOG-mapper	742727.HMPREF9447_04839	tape measure	NA
UHGV-1920910_40	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1920910_40	COG	COG1511	NA	NA
UHGV-1920910_41	Structural annotation	PF19824	NA	NA
UHGV-1920910_45	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1920910_45	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1920910_45	UniRef90	UniRef90_UPI00125CB451	phage antirepressor KilAC domain-containing protein	NA
UHGV-1920910_45	eggNOG-mapper	1122971.BAME01000225_gene6795	BRO family, N-terminal domain	NA
UHGV-1920910_45	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1920910_45	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1920910_45	COG	COG3617	Prophage antirepressor	NA
UHGV-1920910_45	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-1920910_50	PHROG	phrog_2384	NA	unknown function
UHGV-1920910_50	UniRef90	UniRef90_UPI00189EAB26	P63C domain-containing protein	NA
UHGV-1920910_50	eggNOG-mapper	585502.HMPREF0645_2627	P63C domain	NA
UHGV-1920910_50	Pfam	PF10546	P63C domain	P63C
UHGV-1920910_50	Structural annotation	PF10546, COG3617	NA	NA
UHGV-1920910_51	PHROG	phrog_8366	NA	unknown function
UHGV-1920910_51	eggNOG-mapper	991.IW20_00170	NA	NA
UHGV-1920910_52	PHROG	phrog_1281	NA	unknown function
UHGV-1920910_52	UniRef90	UniRef90_A0A174IJF6	Phage-associated protein	NA
UHGV-1920910_52	eggNOG-mapper	1095752.HMPREF9969_2152	NA	NA
UHGV-1920910_52	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-1920910_52	COG	COG3600	NA	NA
UHGV-1920910_52	Structural annotation	PF13274, COG3600	NA	NA
UHGV-1920910_55	Structural annotation	PF02566	NA	NA
UHGV-1920910_56	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1920910_56	UniRef90	UniRef90_UPI00125CCE12	AAA family ATPase	NA
UHGV-1920910_56	eggNOG-mapper	1121887.AUDK01000018_gene3207	AAA domain	NA
UHGV-1920910_56	Pfam	PF13481	AAA domain	AAA_25
UHGV-1920910_56	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-1920910_56	Structural annotation	PF06745, MF_01498, TIGR00416, COG0467	NA	NA
UHGV-1920910_57	Structural annotation	PF02699, MF_01354, NF005100, COG5475	NA	NA
UHGV-1920910_59	Structural annotation	NF004688	NA	NA
UHGV-1920910_64	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1920910_68	Structural annotation	PF08211	NA	NA
UHGV-1920910_72	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1920910_72	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-1920910_72	UniRef90	UniRef90_D1K5B2	Resolvase, N-terminal domain protein	NA
UHGV-1920910_72	eggNOG-mapper	1123058.KB894235_gene1329	Resolvase, N terminal domain	NA
UHGV-1920910_72	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1920910_72	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1920910_72	Structural annotation	PF00239, NF009949, COG1961	NA	NA
UHGV-1920910_75	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-1920910_75	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-1920910_75	UniRef90	UniRef90_A0A374UV54	XRE family transcriptional regulator	NA
UHGV-1920910_75	eggNOG-mapper	1122985.HMPREF1991_02228	Helix-turn-helix domain	NA
UHGV-1920910_75	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1920910_75	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1920910_75	Structural annotation	PF01381, NF041677, COG1396	NA	NA
UHGV-1920910_77	PHROG	phrog_4245	NA	unknown function
UHGV-1920910_77	UniRef90	UniRef90_A0A413NKN4	NA	NA
UHGV-1920910_77	eggNOG-mapper	411476.BACOVA_03945	NA	NA
UHGV-1920910_78	PHROG	phrog_9236	pyrophosphatase	other
UHGV-1920910_78	eggNOG-mapper	1122971.BAME01000163_gene6622	NA	NA
UHGV-1920910_78	Structural annotation	PF08761, COG4508	NA	NA
UHGV-1920910_80	PHROG	phrog_874	NA	unknown function
UHGV-1920910_80	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-1920910_80	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1920910_81	PHROG	phrog_12005	NA	unknown function
UHGV-1920910_82	PHROG	phrog_7314	NA	unknown function
UHGV-1920910_84	UniRef90	UniRef90_UPI001B8B6CBE	NA	NA
UHGV-1920910_84	eggNOG-mapper	411901.BACCAC_01195	NA	NA
UHGV-1920910_84	Pfam	PF04448	NA	DUF551
UHGV-1920910_84	Structural annotation	PF04448, NF041588	NA	NA
UHGV-1920910_85	Structural annotation	PF01283, NF006816, COG4830	NA	NA
UHGV-1920910_88	Structural annotation	PF17457	NA	NA
UHGV-1920910_89	KOfam	K14059	int; integrase	NA
UHGV-1920910_89	PHROG	phrog_1	integrase	integration and excision
UHGV-1920910_89	UniRef90	UniRef90_UPI0018978A7C	site-specific integrase	NA
UHGV-1920910_89	eggNOG-mapper	1121098.HMPREF1534_01885	Belongs to the 'phage' integrase family	NA
UHGV-1920910_89	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1920910_89	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1920910_89	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1920910_89	Structural annotation	PF00589, PF13102, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1920910_90	Structural annotation	PF17613	NA	NA
UHGV-1920910_91	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1920910_91	PHROG	phrog_363	DNA methyltransferase	other
UHGV-1920910_91	UniRef90	UniRef90_A0A015W452	Cytosine-specific methyltransferase	NA
UHGV-1920910_91	eggNOG-mapper	742817.HMPREF9449_01777	DNA methylase	NA
UHGV-1920910_91	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1920910_91	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1920910_91	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1920910_91	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1920910_91	Structural annotation	PF00145, MF_01012, TIGR00675, COG0270	NA	NA
UHGV-1920910_93	PHROG	phrog_35094	NA	unknown function
UHGV-1920910_93	eggNOG-mapper	1527469.A0A076G7F3_9CAUD	NA	NA
UHGV-1920910_94	PHROG	phrog_4433	NA	unknown function
UHGV-1920910_94	eggNOG-mapper	1122971.BAME01000221_gene6790	DNA-templated transcription, initiation	NA
UHGV-1920910_94	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-1920910_94	Structural annotation	NF001666	NA	NA
UHGV-1920910_95	eggNOG-mapper	763034.HMPREF9446_02095	NA	NA