UHGV-1921049

Genome information

Genome length 38,115 bps

CDS count 55

Completeness 99.88% (high-quality)

geNomad score 0.9629

Prediction confidence Confident

Genome information
Genome ID	UHGV-1921049
vOTU ID	vOTU-014646
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300007501\|Ga0104994_100169\|provirus_46179_97579
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.88% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9629
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.5
Jumbo phage	No

Genome content
Genome length	38,115 bps
GC content	47.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	94.11%
Average CDS length	655.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1921049_1	KOfam	K14059	int; integrase	NA
UHGV-1921049_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1921049_1	UniRef90	UniRef90_A0A1C5QPZ2	Integrase	NA
UHGV-1921049_1	eggNOG-mapper	411902.CLOBOL_02558	Belongs to the 'phage' integrase family	NA
UHGV-1921049_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1921049_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1921049_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1921049_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1921049_1	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1921049_2	PHROG	phrog_15412	NA	unknown function
UHGV-1921049_2	UniRef90	UniRef90_UPI00156E50E6	heavy metal-binding domain-containing protein	NA
UHGV-1921049_2	eggNOG-mapper	537013.CLOSTMETH_03242	Putative heavy-metal-binding	NA
UHGV-1921049_2	Pfam	PF01906	Putative heavy-metal-binding	YbjQ_1
UHGV-1921049_2	COG	COG0393	NA	NA
UHGV-1921049_3	UniRef90	UniRef90_A0A1C6J701	Helix-turn-helix	NA
UHGV-1921049_3	eggNOG-mapper	1280698.AUJS01000007_gene1001	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1921049_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1921049_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1921049_5	UniRef90	UniRef90_UPI00156DCD74	helix-turn-helix transcriptional regulator	NA
UHGV-1921049_5	eggNOG-mapper	1235790.C805_00012	Helix-turn-helix domain	NA
UHGV-1921049_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1921049_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1921049_7	PHROG	phrog_6058	NA	unknown function
UHGV-1921049_7	UniRef90	UniRef90_A0A1C5QR48	Helix-turn-helix	NA
UHGV-1921049_7	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-1921049_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1921049_7	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-1921049_9	PHROG	phrog_5070	NA	unknown function
UHGV-1921049_9	UniRef90	UniRef90_UPI00189ACE43	polymer-forming cytoskeletal protein	NA
UHGV-1921049_9	eggNOG-mapper	887929.HMP0721_1276	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-1921049_9	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-1921049_9	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-1921049_11	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1921049_11	UniRef90	UniRef90_UPI001C0120DF	YqaJ viral recombinase family protein	NA
UHGV-1921049_11	eggNOG-mapper	742765.HMPREF9457_02105	YqaJ viral recombinase family	NA
UHGV-1921049_11	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1921049_11	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1921049_11	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1921049_11	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1921049_12	PHROG	phrog_674	NA	unknown function
UHGV-1921049_12	UniRef90	UniRef90_UPI001C0153C8	NA	NA
UHGV-1921049_12	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-1921049_12	Pfam	PF07083	NA	DUF1351
UHGV-1921049_12	Structural annotation	PF07083	NA	NA
UHGV-1921049_13	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1921049_13	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1921049_13	UniRef90	UniRef90_UPI001C026F6F	recombinase RecT	NA
UHGV-1921049_13	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-1921049_13	Pfam	PF03837	RecT family	RecT
UHGV-1921049_13	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1921049_13	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1921049_13	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1921049_14	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1921049_14	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1921049_14	UniRef90	UniRef90_UPI001C01AEC7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1921049_14	eggNOG-mapper	411461.DORFOR_00015	Endodeoxyribonuclease RusA	NA
UHGV-1921049_14	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1921049_14	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1921049_14	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1921049_15	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1921049_15	UniRef90	UniRef90_UPI001C030B8A	NA	NA
UHGV-1921049_15	eggNOG-mapper	411461.DORFOR_00014	NA	NA
UHGV-1921049_15	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1921049_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1921049_15	Structural annotation	PF14297	NA	NA
UHGV-1921049_16	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-1921049_16	UniRef90	UniRef90_UPI00156FBCEE	ORF6C domain-containing protein	NA
UHGV-1921049_16	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-1921049_16	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1921049_16	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1921049_16	COG	COG3617	Prophage antirepressor	NA
UHGV-1921049_16	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-1921049_17	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1921049_17	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1921049_17	UniRef90	UniRef90_UPI001C029164	DNA cytosine methyltransferase	NA
UHGV-1921049_17	eggNOG-mapper	742741.HMPREF9475_00411	C-5 cytosine-specific DNA methylase	NA
UHGV-1921049_17	PADLOC	MTase_II_00174	Type II methyltransferase	RM
UHGV-1921049_17	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1921049_17	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1921049_17	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1921049_17	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-1921049_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1921049_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1921049_18	UniRef90	UniRef90_UPI001C026824	single-stranded DNA-binding protein	NA
UHGV-1921049_18	eggNOG-mapper	658088.HMPREF0987_02000	Single-strand binding protein family	NA
UHGV-1921049_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1921049_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1921049_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1921049_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1921049_18	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1921049_20	PHROG	phrog_15077	NA	unknown function
UHGV-1921049_20	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-1921049_24	UniRef90	UniRef90_A0A412ELZ1	NA	NA
UHGV-1921049_24	Pfam	PF19789	NA	DUF6273
UHGV-1921049_24	Structural annotation	PF19789	NA	NA
UHGV-1921049_25	PHROG	phrog_6568	NA	unknown function
UHGV-1921049_26	PHROG	phrog_11237	NA	unknown function
UHGV-1921049_26	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-1921049_27	PHROG	phrog_2412	NA	unknown function
UHGV-1921049_27	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-1921049_27	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-1921049_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1921049_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1921049_28	UniRef90	UniRef90_UPI00156FDA8C	terminase family protein	NA
UHGV-1921049_28	eggNOG-mapper	742723.HMPREF9477_00911	Phage terminase large subunit	NA
UHGV-1921049_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1921049_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-1921049_28	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1921049_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-1921049_29	UniRef90	UniRef90_UPI00156ECCAD	phage capsid protein	NA
UHGV-1921049_29	eggNOG-mapper	658655.HMPREF0988_02564	NA	NA
UHGV-1921049_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1921049_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1921049_30	UniRef90	UniRef90_UPI001570CBC5	phage minor capsid protein	NA
UHGV-1921049_30	eggNOG-mapper	1235799.C818_04219	Phage minor capsid protein 2	NA
UHGV-1921049_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1921049_30	COG	COG2369	NA	NA
UHGV-1921049_30	Structural annotation	PF06152, PF15887, TIGR01641, COG4307	NA	NA
UHGV-1921049_32	PHROG	phrog_21498	NA	unknown function
UHGV-1921049_32	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-1921049_32	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1921049_32	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-1921049_33	PHROG	phrog_918	NA	unknown function
UHGV-1921049_33	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-1921049_33	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-1921049_33	Pfam	PF19791	NA	DUF6275
UHGV-1921049_33	Structural annotation	PF19791	NA	NA
UHGV-1921049_34	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-1921049_34	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-1921049_34	eggNOG-mapper	521003.COLINT_02327	NA	NA
UHGV-1921049_35	PHROG	phrog_13199	NA	unknown function
UHGV-1921049_35	eggNOG-mapper	476272.RUMHYD_02851	NA	NA
UHGV-1921049_36	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1921049_36	UniRef90	UniRef90_K1ST28	Phage minor structural protein (Fragment)	NA
UHGV-1921049_36	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-1921049_36	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1921049_36	Structural annotation	PF06810	NA	NA
UHGV-1921049_37	PHROG	phrog_422	major head protein	head and packaging
UHGV-1921049_37	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-1921049_37	eggNOG-mapper	679192.HMPREF9013_1301	NA	NA
UHGV-1921049_38	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1921049_38	eggNOG-mapper	658655.HMPREF0988_02559	NA	NA
UHGV-1921049_39	PHROG	phrog_3366	NA	unknown function
UHGV-1921049_39	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-1921049_39	Pfam	PF20536	NA	DUF6751
UHGV-1921049_39	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-1921049_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1921049_40	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-1921049_40	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-1921049_40	Structural annotation	PF11114	NA	NA
UHGV-1921049_41	PHROG	phrog_3266	tail completion	connector
UHGV-1921049_41	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-1921049_41	Structural annotation	PF12691	NA	NA
UHGV-1921049_42	PHROG	phrog_3099	NA	unknown function
UHGV-1921049_42	eggNOG-mapper	742765.HMPREF9457_02132	NA	NA
UHGV-1921049_42	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1921049_43	PHROG	phrog_706	NA	unknown function
UHGV-1921049_43	UniRef90	UniRef90_A0A1C5QVP1	Bacteriophage Gp15 protein	NA
UHGV-1921049_43	eggNOG-mapper	1235792.C808_05375	COG NOG24969 non supervised orthologous group	NA
UHGV-1921049_43	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1921049_43	Structural annotation	PF06854	NA	NA
UHGV-1921049_44	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-1921049_44	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-1921049_44	UniRef90	UniRef90_A0A1C5QW36	Phage-related protein	NA
UHGV-1921049_44	eggNOG-mapper	693746.OBV_25080	Phage-related minor tail protein	NA
UHGV-1921049_44	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1921049_44	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1921049_44	COG	COG5283	Phage-related tail protein	NA
UHGV-1921049_44	Structural annotation	PF10145, TIGR01760, TIGR02971, COG5280, COG3853	NA	NA
UHGV-1921049_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1921049_45	UniRef90	UniRef90_A0A1C5QVY7	Phage-related protein	NA
UHGV-1921049_45	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-1921049_45	COG	COG4722	Phage-related protein YomH	NA
UHGV-1921049_45	Structural annotation	PF05709, PF11699, TIGR01633, NF009806, COG4722	NA	NA
UHGV-1921049_46	PHROG	phrog_3558	tail protein	tail
UHGV-1921049_46	UniRef90	UniRef90_A0A1C5QW63	Phage minor structural protein, N-terminal region	NA
UHGV-1921049_46	eggNOG-mapper	1235799.C818_04233	Prophage endopeptidase tail	NA
UHGV-1921049_46	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1921049_46	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1921049_46	COG	COG4926	Phage-related protein	NA
UHGV-1921049_46	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1921049_47	PHROG	phrog_38190	NA	unknown function
UHGV-1921049_47	UniRef90	UniRef90_UPI001960CF5B	head fiber protein	NA
UHGV-1921049_47	eggNOG-mapper	742733.HMPREF9469_01803	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1921049_47	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1921049_48	UniRef90	UniRef90_B6WRR9	Phage Tail Collar Domain protein (Fragment)	NA
UHGV-1921049_48	eggNOG-mapper	1408428.JNJP01000079_gene3365	Phage tail-collar fibre protein	NA
UHGV-1921049_48	COG	COG4675	Phage tail collar domain	NA
UHGV-1921049_50	PHROG	phrog_199	holin	lysis
UHGV-1921049_50	UniRef90	UniRef90_A0A3D4RB03	Holin	NA
UHGV-1921049_50	eggNOG-mapper	411459.RUMOBE_01714	Bacteriophage holin family	NA
UHGV-1921049_50	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1921049_50	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1921049_50	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1921049_50	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1921049_51	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1921049_51	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1921049_51	UniRef90	UniRef90_UPI0015707BA1	phage antirepressor KilAC domain-containing protein	NA
UHGV-1921049_51	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-1921049_51	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1921049_51	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1921049_51	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1921049_51	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-1921049_52	UniRef90	UniRef90_K1U6U8	Protein phosphatase 1 regulatory subunit 14A	NA
UHGV-1921049_52	eggNOG-mapper	478749.BRYFOR_07649	NA	NA
UHGV-1921049_52	AcrCatalog	cluster_13845	NA	NA
UHGV-1921049_53	UniRef90	UniRef90_A0A8J8ME07	CopG family transcriptional regulator	NA
UHGV-1921049_53	eggNOG-mapper	1235802.C823_04889	NA	NA
UHGV-1921049_54	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-1921049_54	PHROG	phrog_1794	amidase	lysis
UHGV-1921049_54	UniRef90	UniRef90_A0A1C5QWL7	N-acetylmuramoyl-L-alanine amidase AmiD	NA
UHGV-1921049_54	eggNOG-mapper	411470.RUMGNA_02087	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1921049_54	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1921049_54	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1921049_54	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1921049_55	eggNOG-mapper	411459.RUMOBE_03905	NA	NA