UHGV-1922387

Genome information

Genome length 41,054 bps

CDS count 45

Completeness 99.90% (high-quality)

geNomad score 0.9712

Prediction confidence Confident

Genome information
Genome ID	UHGV-1922387
vOTU ID	vOTU-012638
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300007714\|Ga0105661_1000358
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9712
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	5.17
Jumbo phage	No

Genome content
Genome length	41,054 bps
GC content	47.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	94.14%
Average CDS length	864.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1922387_2	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-1922387_2	NCBIFam	NF041793.1	ORF56 family plasmid copy control protein	NA
UHGV-1922387_2	Structural annotation	PF19839, NF041793, COG4877	NA	NA
UHGV-1922387_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1922387_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1922387_6	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1922387_6	UniRef90	UniRef90_A0A6M3JN22	Putative PD-(D/E)XK nuclease superfamily protein	NA
UHGV-1922387_6	eggNOG-mapper	1171373.PACID_15720	Belongs to the helicase family. UvrD subfamily	NA
UHGV-1922387_6	COG	COG2887	RecB family exonuclease	NA
UHGV-1922387_6	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1922387_7	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1922387_7	UniRef90	UniRef90_UPI000B80248C	ERF family protein	NA
UHGV-1922387_7	eggNOG-mapper	420246.GTNG_2854	ERF superfamily	NA
UHGV-1922387_7	Pfam	PF04404	ERF superfamily	ERF
UHGV-1922387_7	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-1922387_8	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1922387_8	eggNOG-mapper	428127.EUBDOL_01246	NA	NA
UHGV-1922387_8	Pfam	PF05772	NinB protein	NinB
UHGV-1922387_8	Structural annotation	PF05772	NA	NA
UHGV-1922387_9	PHROG	phrog_7566	NA	unknown function
UHGV-1922387_9	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-1922387_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1922387_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1922387_11	UniRef90	UniRef90_A0A2V2ET02	Single-stranded DNA-binding protein	NA
UHGV-1922387_11	eggNOG-mapper	1234664.AMRO01000030_gene3672	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1922387_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1922387_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1922387_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1922387_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1922387_11	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1922387_12	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1922387_12	UniRef90	UniRef90_A0A6A4UXR4	Phage replication initiation	NA
UHGV-1922387_12	eggNOG-mapper	1507.HMPREF0262_00303	DnaD domain protein	NA
UHGV-1922387_12	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1922387_12	Structural annotation	TIGR01714	NA	NA
UHGV-1922387_13	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1922387_13	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1922387_13	UniRef90	UniRef90_F7V9D6	Putative DnaC	NA
UHGV-1922387_13	eggNOG-mapper	1399942.U3PBJ1_9CAUD	IstB-like ATP binding protein	NA
UHGV-1922387_13	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1922387_13	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-1922387_14	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1922387_14	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1922387_14	UniRef90	UniRef90_A0A316NA61	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1922387_14	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-1922387_14	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-1922387_14	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1922387_14	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1922387_14	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1922387_14	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-1922387_15	PHROG	phrog_23660	NA	unknown function
UHGV-1922387_15	eggNOG-mapper	1226322.HMPREF1545_03534	NA	NA
UHGV-1922387_16	PHROG	phrog_5984	NA	unknown function
UHGV-1922387_16	eggNOG-mapper	1235835.C814_01168	NA	NA
UHGV-1922387_16	Structural annotation	PF19561	NA	NA
UHGV-1922387_17	UniRef90	UniRef90_UPI0009B2A484	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-1922387_17	eggNOG-mapper	1211817.CCAT010000003_gene253	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-1922387_17	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1922387_18	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-1922387_18	UniRef90	UniRef90_A0A2N1DMT7	RNA-binding protein	NA
UHGV-1922387_18	eggNOG-mapper	393305.YE0860	NA	NA
UHGV-1922387_18	Pfam	PF12961	NA	DUF3850
UHGV-1922387_20	Structural annotation	PF04545, MF_00674, NF008895, COG1595	NA	NA
UHGV-1922387_21	PHROG	phrog_774	NA	unknown function
UHGV-1922387_21	Structural annotation	PF10458	NA	NA
UHGV-1922387_22	UniRef90	UniRef90_UPI000B34C540	helix-turn-helix domain-containing protein	NA
UHGV-1922387_23	PHROG	phrog_24361	terminase	head and packaging
UHGV-1922387_23	UniRef90	UniRef90_R6ELB5	Putative terminase large subunit	NA
UHGV-1922387_23	eggNOG-mapper	445971.ANASTE_00711	Phage terminase, large subunit, PBSX family	NA
UHGV-1922387_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-1922387_23	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1922387_25	PHROG	phrog_156	portal protein	head and packaging
UHGV-1922387_25	UniRef90	UniRef90_A0A8D9UHD1	Portal protein	NA
UHGV-1922387_25	eggNOG-mapper	1121091.AUMP01000003_gene2583	NA	NA
UHGV-1922387_25	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1922387_27	PHROG	phrog_267	major head protein	head and packaging
UHGV-1922387_27	UniRef90	UniRef90_A0A7C6CNA9	P22 coat protein-protein 5 domain protein	NA
UHGV-1922387_27	eggNOG-mapper	665956.HMPREF1032_03906	P22 coat protein-protein 5 domain protein	NA
UHGV-1922387_27	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1922387_29	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-1922387_29	Structural annotation	PF20387	NA	NA
UHGV-1922387_30	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-1922387_30	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-1922387_30	Structural annotation	PF11134, MF_01282, TIGR03300, COG2319	NA	NA
UHGV-1922387_31	eggNOG-mapper	33035.JPJF01000033_gene2261	tail collar domain protein	NA
UHGV-1922387_31	COG	COG4675	Phage tail collar domain	NA
UHGV-1922387_32	PHROG	phrog_5302	tail protein	tail
UHGV-1922387_32	UniRef90	UniRef90_UPI001951D0C2	fibronectin type III domain-containing protein	NA
UHGV-1922387_32	eggNOG-mapper	445970.ALIPUT_02628	NA	NA
UHGV-1922387_32	Structural annotation	COG1262	NA	NA
UHGV-1922387_33	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1922387_33	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1922387_33	UniRef90	UniRef90_A0A1Q6RLC1	Reverse transcriptase domain-containing protein	NA
UHGV-1922387_33	eggNOG-mapper	755164.D6PSR5_9CAUD	RNA-directed DNA polymerase activity	NA
UHGV-1922387_33	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-1922387_33	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1922387_33	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-1922387_40	PHROG	phrog_22978	NA	unknown function
UHGV-1922387_40	eggNOG-mapper	748224.HMPREF9436_01406	NA	NA
UHGV-1922387_43	KOfam	K07497	K07497; putative transposase	NA
UHGV-1922387_43	PHROG	phrog_8463	transposase	integration and excision
UHGV-1922387_43	UniRef90	UniRef90_A0A355V3R3	IS481 family transposase	NA
UHGV-1922387_43	eggNOG-mapper	938289.CAJN020000007_gene170	Integrase core domain	NA
UHGV-1922387_43	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-1922387_43	Pfam	PF00665	Integrase core domain	rve
UHGV-1922387_43	Pfam	PF13683	Integrase core domain	rve_3
UHGV-1922387_43	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-1922387_43	Structural annotation	PF00665, PF13518, NF033577, COG2801	NA	NA
UHGV-1922387_44	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-1922387_44	PHROG	phrog_1740	RNA polymerase sigma factor	transcription regulation
UHGV-1922387_44	UniRef90	UniRef90_A0A3D5MXE2	RNA polymerase subunit sigma-24	NA
UHGV-1922387_44	eggNOG-mapper	1385510.N781_02970	Sigma-70, region 4	NA
UHGV-1922387_44	Pfam	PF07638	ECF sigma factor	Sigma70_ECF
UHGV-1922387_44	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-1922387_44	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1922387_44	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-1922387_44	Structural annotation	PF08281, PF04542, MF_00961, NF009189, COG1595	NA	NA