UHGV-1922401

Genome information

Genome length 35,392 bps

CDS count 43

Completeness 83.90% (medium-quality)

geNomad score 0.9565

Prediction confidence Confident

Genome information
Genome ID	UHGV-1922401
vOTU ID	vOTU-027181
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300006525\|Ga0101027_100104\|provirus_46185_81576
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.90% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9565
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.18
Jumbo phage	No

Genome content
Genome length	35,392 bps
GC content	52.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	88.71%
Average CDS length	731.51 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1922401_1	eggNOG-mapper	1243664.CAVL020000020_gene3196	Replication initiation and membrane attachment	NA
UHGV-1922401_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1922401_1	Structural annotation	PF01978, MF_01819, NF041230, COG3355	NA	NA
UHGV-1922401_2	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1922401_2	PHROG	phrog_3277	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1922401_2	UniRef90	UniRef90_UPI001B37FC83	ATP-binding protein	NA
UHGV-1922401_2	eggNOG-mapper	1158294.JOMI01000001_gene1619	NA	NA
UHGV-1922401_2	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-1922401_4	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1922401_4	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1922401_4	UniRef90	UniRef90_UPI0013EB3847	HNH endonuclease	NA
UHGV-1922401_4	eggNOG-mapper	398512.JQKC01000005_gene5427	HNH endonuclease	NA
UHGV-1922401_4	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1922401_4	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1922401_5	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1922401_5	PHROG	phrog_1	integrase	integration and excision
UHGV-1922401_5	UniRef90	UniRef90_UPI0013ED82B6	tyrosine-type recombinase/integrase	NA
UHGV-1922401_5	eggNOG-mapper	1433126.BN938_0085	Belongs to the 'phage' integrase family	NA
UHGV-1922401_5	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-1922401_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1922401_5	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1922401_5	Structural annotation	PF00589, PF02899, MF_01807, NF001399, COG4974	NA	NA
UHGV-1922401_6	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1922401_6	UniRef90	UniRef90_UPI001EDFAC6C	phage terminase small subunit P27 family	NA
UHGV-1922401_6	eggNOG-mapper	1433126.BN938_0084	Phage terminase, small subunit	NA
UHGV-1922401_6	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1922401_6	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1922401_7	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1922401_7	UniRef90	UniRef90_UPI0018A05C8D	terminase large subunit	NA
UHGV-1922401_7	eggNOG-mapper	2754.EH55_13175	Terminase	NA
UHGV-1922401_7	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1922401_7	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1922401_7	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1922401_7	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1922401_9	PHROG	phrog_12	portal protein	head and packaging
UHGV-1922401_9	UniRef90	UniRef90_UPI001EDCC252	phage portal protein	NA
UHGV-1922401_9	eggNOG-mapper	1408303.JNJJ01000031_gene752	portal protein	NA
UHGV-1922401_9	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1922401_9	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1922401_9	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1922401_9	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1922401_10	KOfam	K06904	NA	NA
UHGV-1922401_10	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1922401_10	UniRef90	UniRef90_UPI0018A02209	HK97 family phage prohead protease	NA
UHGV-1922401_10	eggNOG-mapper	443152.MDG893_20619	Caudovirus prohead serine protease	NA
UHGV-1922401_10	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1922401_10	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1922401_10	COG	COG3740	Phage head maturation protease	NA
UHGV-1922401_10	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1922401_11	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1922401_11	PHROG	phrog_1639	restriction endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1922401_11	UniRef90	UniRef90_UPI001EDDD00C	Eco57I restriction-modification methylase domain-containing protein	NA
UHGV-1922401_11	eggNOG-mapper	1121100.JCM6294_1310	Eco57I restriction-modification methylase	NA
UHGV-1922401_11	PADLOC	MTase_II_00013	Type II methyltransferase	RM
UHGV-1922401_11	Pfam	PF07669	Eco57I restriction-modification methylase	Eco57I
UHGV-1922401_11	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-1922401_11	Structural annotation	PF02384, MF_02126, TIGR02987, COG0827	NA	NA
UHGV-1922401_12	PHROG	phrog_1639	restriction endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1922401_12	UniRef90	UniRef90_UPI00101D3C8C	restriction endonuclease	NA
UHGV-1922401_12	eggNOG-mapper	449673.BACSTE_00730	BsuBI/PstI restriction endonuclease C-terminus	NA
UHGV-1922401_12	PADLOC	REase_II_00022	Type II restriction enzyme	RM
UHGV-1922401_12	Pfam	PF17728	BsuBI/PstI restriction endonuclease HTH domain	BsuBI_PstI_RE_N
UHGV-1922401_12	Pfam	PF06616	BsuBI/PstI restriction endonuclease domain	BsuBI_PstI_RE
UHGV-1922401_12	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-1922401_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-1922401_13	UniRef90	UniRef90_UPI0013E9AE26	phage major capsid protein	NA
UHGV-1922401_13	eggNOG-mapper	1433126.BN938_0523	Phage capsid family	NA
UHGV-1922401_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1922401_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1922401_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1922401_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1922401_14	PHROG	phrog_442	head-tail adaptor	connector
UHGV-1922401_14	UniRef90	UniRef90_UPI00189F93C6	phage gp6-like head-tail connector protein	NA
UHGV-1922401_14	eggNOG-mapper	391896.A1I_06260	Phage gp6-like head-tail connector protein	NA
UHGV-1922401_14	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1922401_14	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1922401_14	Structural annotation	PF05135, TIGR02215	NA	NA
UHGV-1922401_15	UniRef90	UniRef90_UPI00189E23FD	phage head closure protein	NA
UHGV-1922401_15	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1922401_15	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1922401_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1922401_16	UniRef90	UniRef90_UPI001B3652B9	HK97 gp10 family phage protein	NA
UHGV-1922401_16	eggNOG-mapper	1433126.BN938_0520	NA	NA
UHGV-1922401_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1922401_16	Structural annotation	PF06763, TIGR01725	NA	NA
UHGV-1922401_17	Structural annotation	PF11367	NA	NA
UHGV-1922401_18	PHROG	phrog_1407	major tail protein	tail
UHGV-1922401_18	UniRef90	UniRef90_UPI00101DFFCB	phage tail tube protein	NA
UHGV-1922401_18	eggNOG-mapper	1122931.AUAE01000036_gene1068	Phage tail tube protein	NA
UHGV-1922401_18	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1922401_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1922401_19	Structural annotation	PF11836	NA	NA
UHGV-1922401_21	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1922401_21	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1922401_21	UniRef90	UniRef90_UPI001E56E7CE	DNA adenine methylase	NA
UHGV-1922401_21	eggNOG-mapper	1433126.BN938_0136	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-1922401_21	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-1922401_21	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1922401_21	COG	COG0338	DNA-adenine methylase	NA
UHGV-1922401_21	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-1922401_22	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1922401_22	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1922401_22	UniRef90	UniRef90_UPI00101BD2A6	site-specific DNA-methyltransferase	NA
UHGV-1922401_22	eggNOG-mapper	1122173.AXVL01000018_gene452	DNA methylase	NA
UHGV-1922401_22	PADLOC	MTase_II_00173	Type II methyltransferase	RM
UHGV-1922401_22	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1922401_22	COG	COG0863	DNA modification methylase	NA
UHGV-1922401_22	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-1922401_26	UniRef90	UniRef90_UPI001EDD5E2B	NA	NA
UHGV-1922401_26	eggNOG-mapper	138119.DSY4589	NA	NA
UHGV-1922401_26	Pfam	PF14192	NA	DUF4314
UHGV-1922401_26	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-1922401_26	Structural annotation	PF14192, NF007106	NA	NA
UHGV-1922401_27	eggNOG-mapper	1121098.HMPREF1534_03393	NA	NA
UHGV-1922401_28	Structural annotation	PF15513, COG5353	NA	NA
UHGV-1922401_31	Structural annotation	PF02185	NA	NA
UHGV-1922401_32	PHROG	phrog_1987	NA	unknown function
UHGV-1922401_33	PHROG	phrog_11900	NA	unknown function
UHGV-1922401_33	UniRef90	UniRef90_A0A5J4S0H5	Adenosine monophosphate-protein transferase and cysteine protease IbpA	NA
UHGV-1922401_33	eggNOG-mapper	226186.BT_2513	Fic/DOC family	NA
UHGV-1922401_33	Pfam	PF02661	Fic/DOC family	Fic
UHGV-1922401_33	COG	COG3177	Fic family protein	NA
UHGV-1922401_33	Structural annotation	PF02661, PF07106, TIGR02613, NF000244, COG3177	NA	NA
UHGV-1922401_34	PHROG	phrog_9915	NA	unknown function
UHGV-1922401_34	UniRef90	UniRef90_UPI00101CDCED	BspA family leucine-rich repeat surface protein	NA
UHGV-1922401_34	Pfam	PF03382	NA	DUF285
UHGV-1922401_34	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-1922401_34	Structural annotation	PF03382	NA	NA
UHGV-1922401_37	UniRef90	UniRef90_A0A060R6K6	Phage capsid and scaffold	NA
UHGV-1922401_37	eggNOG-mapper	445970.ALIPUT_01638	cellulase activity	NA
UHGV-1922401_37	COG	COG4926	Phage-related protein	NA
UHGV-1922401_38	PHROG	phrog_11745	NA	unknown function
UHGV-1922401_38	UniRef90	UniRef90_UPI0013EDFB17	toll/interleukin-1 receptor domain-containing protein	NA
UHGV-1922401_38	eggNOG-mapper	1454007.JAUG01000012_gene2448	SEFIR domain	NA
UHGV-1922401_38	Pfam	PF13676	TIR domain	TIR_2
UHGV-1922401_38	COG	COG0775	Nucleoside phosphorylase/nucleosidase, includes 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase MtnN and futalosine hydrolase MqnB	NA
UHGV-1922401_39	PHROG	phrog_27166	tail length tape measure protein	tail
UHGV-1922401_39	UniRef90	UniRef90_UPI000C15DCE7	phage tail length tape measure family protein	NA
UHGV-1922401_39	eggNOG-mapper	1433126.BN938_0515	domain protein	NA
UHGV-1922401_39	COG	COG5283	Phage-related tail protein	NA
UHGV-1922401_39	Structural annotation	PF05537, TIGR01760, COG3941	NA	NA
UHGV-1922401_40	PHROG	phrog_873	endolysin	head and packaging
UHGV-1922401_40	UniRef90	UniRef90_UPI00189C60BB	structural protein P5	NA
UHGV-1922401_40	eggNOG-mapper	1433126.BN938_0138	NA	NA
UHGV-1922401_42	PHROG	phrog_30639	NA	unknown function
UHGV-1922401_42	eggNOG-mapper	1433126.BN938_0140	NA	NA
UHGV-1922401_42	Structural annotation	PF18975, PF10916, MF_01282, NF000022, COG4257, COG4379	NA	NA
UHGV-1922401_43	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1922401_43	PHROG	phrog_1	integrase	integration and excision
UHGV-1922401_43	UniRef90	UniRef90_UPI001EDDD315	site-specific integrase	NA
UHGV-1922401_43	eggNOG-mapper	1433126.BN938_0141	Belongs to the 'phage' integrase family	NA
UHGV-1922401_43	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-1922401_43	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1922401_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1922401_43	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1922401_43	Structural annotation	PF00589, PF13102, PF17293, MF_01808, TIGR02224, COG4974	NA	NA