UHGV-1924315

Genome information

Genome length 40,997 bps

CDS count 49

Completeness 93.91% (high-quality)

geNomad score 0.9546

Prediction confidence Confident

Genome information
Genome ID	UHGV-1924315
vOTU ID	vOTU-063418
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300007210\|Ga0103359_100097\|provirus_36899_77895
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.91% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9546
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.63
Jumbo phage	No

Genome content
Genome length	40,997 bps
GC content	51.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	93.12%
Average CDS length	782.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1924315_3	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1924315_3	PHROG	phrog_6444	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1924315_3	UniRef90	UniRef90_UPI0018A8974B	DNA primase	NA
UHGV-1924315_3	eggNOG-mapper	908612.HMPREF9720_2451	DNA primase catalytic core, N-terminal domain	NA
UHGV-1924315_3	PADLOC	drt-UG29	DRT	DRT
UHGV-1924315_3	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1924315_3	Pfam	PF08275	DNA primase catalytic core, N-terminal domain	DNAG_N
UHGV-1924315_3	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-1924315_3	NCBIFam	TIGR01391.1	DNA primase	NA
UHGV-1924315_3	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1924315_3	Structural annotation	PF01807, PF08275, PF06048, MF_00974, MF_00016, TIGR01391, NF040949, COG0358, COG5519	NA	NA
UHGV-1924315_4	UniRef90	UniRef90_UPI0018A06539	helix-turn-helix transcriptional regulator	NA
UHGV-1924315_4	eggNOG-mapper	908612.HMPREF9720_2450	NA	NA
UHGV-1924315_4	Structural annotation	NF041951, COG1396	NA	NA
UHGV-1924315_5	eggNOG-mapper	742725.HMPREF9450_02087	NA	NA
UHGV-1924315_6	PHROG	phrog_874	NA	unknown function
UHGV-1924315_6	eggNOG-mapper	1033732.CAHI01000035_gene2756	NA	NA
UHGV-1924315_6	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1924315_7	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1924315_7	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1924315_7	UniRef90	UniRef90_E4M7Y9	D12 class N6 adenine-specific DNA methyltransferase (Fragment)	NA
UHGV-1924315_7	eggNOG-mapper	908612.HMPREF9720_0683	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-1924315_7	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-1924315_7	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1924315_7	COG	COG0338	DNA-adenine methylase	NA
UHGV-1924315_7	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-1924315_8	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1924315_8	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1924315_8	UniRef90	UniRef90_UPI001899D1D8	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-1924315_8	eggNOG-mapper	1203611.KB894547_gene2575	sulfate reduction	NA
UHGV-1924315_8	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1924315_8	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1924315_8	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-1924315_13	KOfam	K21511	GPC; capsid assembly protease [EC:3.4.21.-]	NA
UHGV-1924315_13	PHROG	phrog_53	head maturation protease	head and packaging
UHGV-1924315_13	UniRef90	UniRef90_UPI00189C4273	S49 family peptidase	NA
UHGV-1924315_13	eggNOG-mapper	1203611.KB894547_gene2582	Peptidase, S49 (Protease IV) family protein	NA
UHGV-1924315_13	Pfam	PF01343	Peptidase family S49	Peptidase_S49
UHGV-1924315_13	COG	COG0616	Periplasmic serine protease, ClpP class	NA
UHGV-1924315_13	Structural annotation	PF01343, MF_01051, TIGR00706, COG0616	NA	NA
UHGV-1924315_14	eggNOG-mapper	1203611.KB894547_gene2583	NA	NA
UHGV-1924315_14	Structural annotation	PF05065, MF_04119, TIGR01551, COG4653	NA	NA
UHGV-1924315_15	PHROG	phrog_19897	NA	unknown function
UHGV-1924315_15	eggNOG-mapper	272559.BF9343_2338	NA	NA
UHGV-1924315_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1924315_16	Structural annotation	PF03414, NF009924	NA	NA
UHGV-1924315_17	PHROG	phrog_21662	NA	unknown function
UHGV-1924315_17	eggNOG-mapper	1033732.CAHI01000035_gene2747	NA	NA
UHGV-1924315_18	AcrCatalog	cluster_138986	NA	NA
UHGV-1924315_18	Structural annotation	PF17941, MF_01918, NF010490, COG3886	NA	NA
UHGV-1924315_19	PHROG	phrog_20504	NA	unknown function
UHGV-1924315_19	eggNOG-mapper	1033732.CAHI01000035_gene2746	NA	NA
UHGV-1924315_20	eggNOG-mapper	1033732.CAHI01000035_gene2745	NA	NA
UHGV-1924315_20	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1924315_21	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-1924315_21	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1924315_21	UniRef90	UniRef90_A0A7X8IGY9	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-1924315_21	eggNOG-mapper	1144313.PMI10_00674	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-1924315_21	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-1924315_21	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-1924315_21	Structural annotation	PF07927, COG1724	NA	NA
UHGV-1924315_22	UniRef90	UniRef90_A0A7X8IHQ9	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-1924315_22	eggNOG-mapper	471870.BACINT_03962	PFAM Uncharacterised protein family UPF0150	NA
UHGV-1924315_22	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1924315_22	Structural annotation	PF21748, NF041951, COG1598	NA	NA
UHGV-1924315_24	PHROG	phrog_26140	NA	unknown function
UHGV-1924315_24	eggNOG-mapper	1033732.CAHI01000035_gene2740	NA	NA
UHGV-1924315_25	PHROG	phrog_22277	NA	unknown function
UHGV-1924315_25	eggNOG-mapper	1033732.CAHI01000035_gene2739	NA	NA
UHGV-1924315_25	Structural annotation	PF07230, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-1924315_26	PHROG	phrog_27760	NA	unknown function
UHGV-1924315_26	eggNOG-mapper	1033732.CAHI01000035_gene2738	NA	NA
UHGV-1924315_26	Pfam	PF20459	NA	DUF6712
UHGV-1924315_26	Structural annotation	PF20459	NA	NA
UHGV-1924315_27	eggNOG-mapper	1033732.CAHI01000035_gene2737	NA	NA
UHGV-1924315_28	Structural annotation	PF11367, COG2029	NA	NA
UHGV-1924315_29	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1924315_29	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1924315_29	UniRef90	UniRef90_A0A358M0B8	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-1924315_29	eggNOG-mapper	1203611.KB894547_gene2588	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-1924315_29	PADLOC	MTase_II_00054	Type II methyltransferase	RM
UHGV-1924315_29	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1924315_29	COG	COG0338	DNA-adenine methylase	NA
UHGV-1924315_29	Structural annotation	PF02086, MF_00786, NF008152, COG0338	NA	NA
UHGV-1924315_30	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-1924315_30	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-1924315_30	UniRef90	UniRef90_F0QZU1	Helix-turn-helix domain protein	NA
UHGV-1924315_30	eggNOG-mapper	667015.Bacsa_2678	Helix-turn-helix domain	NA
UHGV-1924315_30	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1924315_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1924315_30	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-1924315_30	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1924315_34	UniRef90	UniRef90_A0A3D6E9W8	Core-binding (CB) domain-containing protein	NA
UHGV-1924315_34	eggNOG-mapper	1033732.CAHI01000035_gene2733	NA	NA
UHGV-1924315_35	PHROG	phrog_25337	tail length tape measure protein	tail
UHGV-1924315_35	UniRef90	UniRef90_UPI0018AA79C3	phage tail tape measure protein	NA
UHGV-1924315_35	eggNOG-mapper	908612.HMPREF9720_0700	Phage-related minor tail protein	NA
UHGV-1924315_35	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1924315_35	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1924315_35	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1924315_35	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1924315_36	eggNOG-mapper	908612.HMPREF9720_0701	NA	NA
UHGV-1924315_36	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1924315_37	eggNOG-mapper	1033732.CAHI01000035_gene2730	NA	NA
UHGV-1924315_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1924315_44	PHROG	phrog_20732	NA	unknown function
UHGV-1924315_44	UniRef90	UniRef90_A0A495VV42	Holin family protein	NA
UHGV-1924315_44	eggNOG-mapper	679935.Alfi_2717	NA	NA
UHGV-1924315_46	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-1924315_46	PHROG	phrog_894	endolysin	lysis
UHGV-1924315_46	UniRef90	UniRef90_A0A143XLQ9	Peptidase M15	NA
UHGV-1924315_46	eggNOG-mapper	547042.BACCOPRO_00949	Peptidase M15	NA
UHGV-1924315_46	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-1924315_46	COG	COG3108	NA	NA
UHGV-1924315_46	Structural annotation	PF08291, COG3108	NA	NA
UHGV-1924315_47	PHROG	phrog_26448	NA	unknown function
UHGV-1924315_47	eggNOG-mapper	742725.HMPREF9450_02132	NA	NA
UHGV-1924315_47	Pfam	PF20647	NA	DUF6808
UHGV-1924315_47	Structural annotation	PF20647	NA	NA
UHGV-1924315_48	PHROG	phrog_4962	NA	unknown function
UHGV-1924315_48	UniRef90	UniRef90_UPI000694DE3B	FRG domain-containing protein	NA
UHGV-1924315_48	eggNOG-mapper	402881.Plav_0332	PFAM FRG domain	NA
UHGV-1924315_48	Pfam	PF08867	FRG domain	FRG
UHGV-1924315_49	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1924315_49	PHROG	phrog_1	integrase	integration and excision
UHGV-1924315_49	UniRef90	UniRef90_E4M819	Site-specific recombinase, phage integrase family	NA
UHGV-1924315_49	eggNOG-mapper	908612.HMPREF9720_0713	Phage integrase family	NA
UHGV-1924315_49	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1924315_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1924315_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1924315_49	Structural annotation	PF00589, PF13102, MF_02055, TIGR02224, COG4973	NA	NA