UHGV-1925431

Genome information

Genome length 36,491 bps

CDS count 61

Completeness 86.57% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-1925431
vOTU ID	vOTU-035875
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300006464\|Ga0100221_1000567\|provirus_5110_41600
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.57% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.92
Jumbo phage	No

Genome content
Genome length	36,491 bps
GC content	52.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	90.21%
Average CDS length	544.62 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1925431_1	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-1925431_1	PHROG	phrog_37855	NA	unknown function
UHGV-1925431_1	UniRef90	UniRef90_A0A1Q6RER1	Stage 0 sporulation protein A homolog	NA
UHGV-1925431_1	eggNOG-mapper	1235797.C816_02612	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-1925431_1	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-1925431_1	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-1925431_1	NCBIFam	TIGR02875.1	sporulation transcription factor Spo0A	NA
UHGV-1925431_1	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-1925431_1	Structural annotation	PF08769, PF00072, MF_00099, TIGR02875, COG0745	NA	NA
UHGV-1925431_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1925431_2	PHROG	phrog_95	integrase	integration and excision
UHGV-1925431_2	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-1925431_2	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-1925431_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1925431_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1925431_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1925431_2	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-1925431_3	eggNOG-mapper	1408322.JHYK01000019_gene245	Putative restriction endonuclease	NA
UHGV-1925431_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1925431_3	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-1925431_3	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-1925431_4	eggNOG-mapper	1262449.CP6013_2082	NA	NA
UHGV-1925431_4	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-1925431_7	Structural annotation	PF13601, MF_01819, NF008565, COG1846	NA	NA
UHGV-1925431_8	Structural annotation	NF007257, COG1396	NA	NA
UHGV-1925431_9	UniRef90	UniRef90_A0A3D3Y6C1	XRE family transcriptional regulator	NA
UHGV-1925431_9	eggNOG-mapper	1458462.JNLK01000001_gene1760	sequence-specific DNA binding	NA
UHGV-1925431_9	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1925431_9	COG	COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	NA
UHGV-1925431_9	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1925431_10	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-1925431_10	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-1925431_15	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1925431_16	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1925431_16	UniRef90	UniRef90_UPI001D0928A0	YqaJ viral recombinase family protein	NA
UHGV-1925431_16	eggNOG-mapper	742740.HMPREF9474_03486	YqaJ viral recombinase family	NA
UHGV-1925431_16	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1925431_16	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1925431_16	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1925431_16	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1925431_17	PHROG	phrog_674	NA	unknown function
UHGV-1925431_17	UniRef90	UniRef90_UPI001D085352	NA	NA
UHGV-1925431_17	eggNOG-mapper	1121441.AUCX01000014_gene537	NA	NA
UHGV-1925431_17	Pfam	PF07083	NA	DUF1351
UHGV-1925431_17	Structural annotation	PF07083	NA	NA
UHGV-1925431_18	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1925431_18	UniRef90	UniRef90_UPI001D07A468	phage recombination protein Bet	NA
UHGV-1925431_18	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-1925431_18	Pfam	PF03837	RecT family	RecT
UHGV-1925431_18	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-1925431_18	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1925431_18	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-1925431_19	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1925431_19	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-1925431_19	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1925431_19	Structural annotation	PF05772	NA	NA
UHGV-1925431_20	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1925431_20	UniRef90	UniRef90_UPI001C122365	HNH endonuclease	NA
UHGV-1925431_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1925431_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1925431_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1925431_21	UniRef90	UniRef90_A0A1C5QDM6	Single-stranded DNA-binding protein	NA
UHGV-1925431_21	eggNOG-mapper	1226322.HMPREF1545_04080	Single-strand binding protein family	NA
UHGV-1925431_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1925431_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1925431_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1925431_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1925431_21	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1925431_22	PHROG	phrog_1408	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1925431_22	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-1925431_22	eggNOG-mapper	1095750.HMPREF9970_1674	NA	NA
UHGV-1925431_23	Structural annotation	PF21485	NA	NA
UHGV-1925431_25	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1925431_25	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1925431_25	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1925431_25	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-1925431_25	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1925431_27	PHROG	phrog_474	phosphofructokinase	other
UHGV-1925431_27	UniRef90	UniRef90_A0A2V2EHL9	NA	NA
UHGV-1925431_27	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-1925431_27	Pfam	PF19905	NA	DUF6378
UHGV-1925431_27	Structural annotation	PF19905	NA	NA
UHGV-1925431_28	KOfam	K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	NA
UHGV-1925431_28	PHROG	phrog_17284	NA	unknown function
UHGV-1925431_28	UniRef90	UniRef90_UPI001EDDC2F3	DNA cytosine methyltransferase	NA
UHGV-1925431_28	eggNOG-mapper	1235797.C816_01614	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1925431_28	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1925431_28	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1925431_28	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-1925431_29	Pfam	PF04448	NA	DUF551
UHGV-1925431_30	PHROG	phrog_38832	NA	unknown function
UHGV-1925431_30	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-1925431_30	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-1925431_31	PHROG	phrog_3136	NA	unknown function
UHGV-1925431_31	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-1925431_31	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-1925431_31	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1925431_31	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-1925431_33	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-1925431_33	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-1925431_34	PHROG	phrog_22543	NA	unknown function
UHGV-1925431_34	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-1925431_37	KOfam	K02647	cdaR; carbohydrate diacid regulator	NA
UHGV-1925431_37	UniRef90	UniRef90_UPI00164DE10C	helix-turn-helix domain-containing protein	NA
UHGV-1925431_37	eggNOG-mapper	1301100.HG529387_gene5110	Putative sugar diacid recognition	NA
UHGV-1925431_37	Pfam	PF13556	PucR C-terminal helix-turn-helix domain	HTH_30
UHGV-1925431_37	COG	COG3835	Sugar diacid utilization regulator CdaR	NA
UHGV-1925431_37	Structural annotation	PF13556, TIGR00637, COG2771	NA	NA
UHGV-1925431_38	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-1925431_39	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1925431_39	UniRef90	UniRef90_A0A1C6J963	Helix-turn-helix	NA
UHGV-1925431_39	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-1925431_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1925431_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1925431_40	PHROG	phrog_872	NA	unknown function
UHGV-1925431_40	UniRef90	UniRef90_A0A8J6M9F5	NA	NA
UHGV-1925431_40	eggNOG-mapper	1519439.JPJG01000060_gene1880	NA	NA
UHGV-1925431_40	Pfam	PF11195	NA	DUF2829
UHGV-1925431_40	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-1925431_40	Structural annotation	PF11195	NA	NA
UHGV-1925431_41	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1925431_41	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1925431_41	UniRef90	UniRef90_A0A810Q3Z7	N6_N4_Mtase domain-containing protein	NA
UHGV-1925431_41	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-1925431_41	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1925431_41	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1925431_41	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1925431_41	COG	COG0863	DNA modification methylase	NA
UHGV-1925431_41	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-1925431_44	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1925431_44	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1925431_44	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-1925431_44	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-1925431_44	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1925431_44	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1925431_44	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1925431_44	COG	COG1783	Phage terminase large subunit	NA
UHGV-1925431_44	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1925431_45	PHROG	phrog_533	portal protein	head and packaging
UHGV-1925431_45	UniRef90	UniRef90_UPI0006C81717	phage portal protein	NA
UHGV-1925431_45	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-1925431_45	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1925431_45	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1925431_46	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1925431_46	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-1925431_46	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-1925431_46	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1925431_46	COG	COG2369	NA	NA
UHGV-1925431_46	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-1925431_48	Structural annotation	PF18152	NA	NA
UHGV-1925431_49	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-1925431_49	Structural annotation	PF06810	NA	NA
UHGV-1925431_50	PHROG	phrog_10	major head protein	head and packaging
UHGV-1925431_50	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-1925431_50	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-1925431_50	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1925431_50	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1925431_50	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1925431_50	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1925431_51	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1925431_51	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-1925431_52	PHROG	phrog_3366	NA	unknown function
UHGV-1925431_52	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-1925431_52	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1925431_53	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1925431_53	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-1925431_53	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-1925431_53	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1925431_53	Structural annotation	PF11114	NA	NA
UHGV-1925431_54	PHROG	phrog_3266	tail completion	connector
UHGV-1925431_54	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-1925431_54	Structural annotation	PF12691	NA	NA
UHGV-1925431_55	PHROG	phrog_3099	NA	unknown function
UHGV-1925431_55	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-1925431_55	Structural annotation	TIGR02126	NA	NA
UHGV-1925431_56	PHROG	phrog_11299	NA	unknown function
UHGV-1925431_56	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-1925431_56	Structural annotation	PF10666	NA	NA
UHGV-1925431_57	PHROG	phrog_706	NA	unknown function
UHGV-1925431_57	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-1925431_57	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-1925431_57	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1925431_57	Structural annotation	PF06854	NA	NA
UHGV-1925431_59	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1925431_59	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-1925431_59	COG	COG1511	NA	NA
UHGV-1925431_59	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-1925431_60	PHROG	phrog_1194	NA	unknown function
UHGV-1925431_60	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-1925431_60	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1925431_61	PHROG	phrog_32744	NA	unknown function
UHGV-1925431_61	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-1925431_61	Structural annotation	PF14594, NF033848, COG4379	NA	NA