UHGV-1926841

Genome information

Genome length 31,576 bps

CDS count 48

Completeness 53.59% (medium-quality)

geNomad score 0.9557

Prediction confidence Confident

Genome information
Genome ID	UHGV-1926841
vOTU ID	vOTU-040000
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300008079\|Ga0105956_100052\|provirus_124784_163561
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.59% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9557
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.9
Jumbo phage	No

Genome content
Genome length	31,576 bps
GC content	42.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	87.41%
Average CDS length	576.63 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1926841_2	eggNOG-mapper	411479.BACUNI_02659	NA	NA
UHGV-1926841_4	PHROG	phrog_37753	NA	unknown function
UHGV-1926841_4	UniRef90	UniRef90_A0A6A2FW75	Type I restriction endonuclease subunit R	NA
UHGV-1926841_4	eggNOG-mapper	411479.BACUNI_02657	NA	NA
UHGV-1926841_4	Structural annotation	PF13588, PF01878, COG4748, COG2947	NA	NA
UHGV-1926841_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1926841_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1926841_5	UniRef90	UniRef90_A0A016GJM5	Peptidase S24-like family protein	NA
UHGV-1926841_5	eggNOG-mapper	411479.BACUNI_02656	Helix-turn-helix XRE-family like proteins	NA
UHGV-1926841_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1926841_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1926841_5	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-1926841_6	PHROG	phrog_1086	NA	unknown function
UHGV-1926841_6	UniRef90	UniRef90_A0A173Z9U0	NA	NA
UHGV-1926841_6	eggNOG-mapper	357276.EL88_11565	WYL_2, Sm-like SH3 beta-barrel fold	NA
UHGV-1926841_6	Pfam	PF10902	WYL_2, Sm-like SH3 beta-barrel fold	WYL_2
UHGV-1926841_11	UniRef90	UniRef90_A0A4S2AZ55	DNA-binding response regulator	NA
UHGV-1926841_11	eggNOG-mapper	357276.EL88_11540	response regulator	NA
UHGV-1926841_11	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-1926841_11	Structural annotation	PF00196, COG2771	NA	NA
UHGV-1926841_12	UniRef90	UniRef90_A0A414JTI6	DNA-binding protein	NA
UHGV-1926841_12	eggNOG-mapper	1347393.HG726021_gene520	Helix-turn-helix domain	NA
UHGV-1926841_12	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1926841_12	COG	COG0789	DNA-binding transcriptional regulator, MerR family	NA
UHGV-1926841_12	Structural annotation	PF12728, MF_01155, NF033787, COG3311	NA	NA
UHGV-1926841_13	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1926841_13	UniRef90	UniRef90_A0A380Z5W5	ATP-binding protein	NA
UHGV-1926841_13	eggNOG-mapper	357276.EL88_11530	AAA domain	NA
UHGV-1926841_13	Pfam	PF13479	AAA domain	AAA_24
UHGV-1926841_13	COG	COG1100	GTPase SAR1 family domain	NA
UHGV-1926841_13	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1926841_14	PHROG	phrog_35319	NA	unknown function
UHGV-1926841_14	UniRef90	UniRef90_UPI001106702F	HNH endonuclease	NA
UHGV-1926841_14	eggNOG-mapper	357276.EL88_11525	NA	NA
UHGV-1926841_14	Structural annotation	PF10926, MF_03030	NA	NA
UHGV-1926841_15	PHROG	phrog_4932	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1926841_15	UniRef90	UniRef90_A0A413GSH5	NA	NA
UHGV-1926841_15	eggNOG-mapper	357276.EL88_11515	NA	NA
UHGV-1926841_15	Pfam	PF11325	NA	DUF3127
UHGV-1926841_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1926841_15	Structural annotation	PF11325, MF_00720, NF005241, COG2965	NA	NA
UHGV-1926841_16	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1926841_16	eggNOG-mapper	1392486.JIAF01000004_gene837	NA	NA
UHGV-1926841_16	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1926841_17	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1926841_17	UniRef90	UniRef90_A0A496DDB5	Endonuclease	NA
UHGV-1926841_17	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-1926841_17	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1926841_17	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1926841_17	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1926841_17	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-1926841_18	PHROG	phrog_35807	NA	unknown function
UHGV-1926841_18	UniRef90	UniRef90_A0A173Z9Q2	DNA-directed RNA polymerase subunit beta	NA
UHGV-1926841_18	eggNOG-mapper	357276.EL88_11505	RNA polymerase activity	NA
UHGV-1926841_18	COG	COG0085	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA
UHGV-1926841_18	Structural annotation	PF14902	NA	NA
UHGV-1926841_19	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1926841_19	UniRef90	UniRef90_UPI000E4AE634	recombination protein NinG	NA
UHGV-1926841_19	eggNOG-mapper	357276.EL88_11490	Bacteriophage Lambda NinG protein	NA
UHGV-1926841_19	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-1926841_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1926841_19	Structural annotation	PF05766	NA	NA
UHGV-1926841_20	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-1926841_20	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1926841_20	UniRef90	UniRef90_D1K9K1	Helicase C-terminal domain protein	NA
UHGV-1926841_20	eggNOG-mapper	357276.EL88_11480	helicase superfamily c-terminal domain	NA
UHGV-1926841_20	PADLOC	mREase_IV_00004	Type IV methyl-directed restriction enzyme	RM
UHGV-1926841_20	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1926841_20	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1926841_20	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1926841_20	Structural annotation	PF18766, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-1926841_21	PHROG	phrog_345	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-1926841_21	eggNOG-mapper	1121100.JCM6294_532	DnaD domain protein	NA
UHGV-1926841_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1926841_21	Structural annotation	PF20024, MF_01819, NF040642, COG0640	NA	NA
UHGV-1926841_22	PHROG	phrog_29547	NA	unknown function
UHGV-1926841_22	UniRef90	UniRef90_A0A6L5XC99	HTH araC/xylS-type domain-containing protein	NA
UHGV-1926841_22	eggNOG-mapper	1122985.HMPREF1991_02244	NA	NA
UHGV-1926841_22	Pfam	PF20338	NA	DUF6633
UHGV-1926841_22	Structural annotation	PF20338	NA	NA
UHGV-1926841_24	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1926841_24	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1926841_24	UniRef90	UniRef90_A0A3A5S267	Methyltransferase	NA
UHGV-1926841_24	eggNOG-mapper	411154.GFO_2469	DNA methylase	NA
UHGV-1926841_24	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-1926841_24	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1926841_24	COG	COG0863	DNA modification methylase	NA
UHGV-1926841_24	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-1926841_25	eggNOG-mapper	1122971.BAME01000058_gene4471	NA	NA
UHGV-1926841_25	Structural annotation	PF18275	NA	NA
UHGV-1926841_27	UniRef90	UniRef90_UPI0018A95842	NA	NA
UHGV-1926841_27	eggNOG-mapper	411901.BACCAC_01195	NA	NA
UHGV-1926841_27	Pfam	PF04448	NA	DUF551
UHGV-1926841_29	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1926841_29	PHROG	phrog_1	integrase	integration and excision
UHGV-1926841_29	UniRef90	UniRef90_A0A3E5F0J8	Site-specific integrase	NA
UHGV-1926841_29	eggNOG-mapper	1235788.C802_02920	Belongs to the 'phage' integrase family	NA
UHGV-1926841_29	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-1926841_29	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1926841_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1926841_29	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1926841_29	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1926841_30	UniRef90	UniRef90_A0A4R4GRS4	HTH cro/C1-type domain-containing protein	NA
UHGV-1926841_30	eggNOG-mapper	1235788.C802_02919	NA	NA
UHGV-1926841_31	UniRef90	UniRef90_A0A3E5EZV7	DNA-binding protein	NA
UHGV-1926841_31	eggNOG-mapper	1235788.C802_02918	NA	NA
UHGV-1926841_31	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1926841_32	UniRef90	UniRef90_A0A4S2FHN2	Mobilization protein	NA
UHGV-1926841_32	eggNOG-mapper	1235788.C802_02917	COG NOG25714 non supervised orthologous group	NA
UHGV-1926841_32	Pfam	PF13481	AAA domain	AAA_25
UHGV-1926841_32	COG	COG0467	RecA-superfamily ATPase, KaiC/GvpD/RAD55 family	NA
UHGV-1926841_32	Structural annotation	PF06745, PF09999, MF_00350, TIGR00416, COG3598	NA	NA
UHGV-1926841_33	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1926841_33	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1926841_33	UniRef90	UniRef90_A0A6N2WV58	DNA primase	NA
UHGV-1926841_33	eggNOG-mapper	1235788.C802_02916	NA	NA
UHGV-1926841_33	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1926841_33	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-1926841_33	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1926841_33	Structural annotation	PF13362, PF01807, MF_00974, TIGR01391, COG4643	NA	NA
UHGV-1926841_34	UniRef90	UniRef90_A0A6N2WV43	Chromosome partition protein Smc	NA
UHGV-1926841_34	eggNOG-mapper	1235788.C802_02915	NA	NA
UHGV-1926841_34	Pfam	PF01076	Plasmid recombination enzyme	Mob_Pre
UHGV-1926841_34	NCBIFam	NF041497.1	MobV family relaxase	NA
UHGV-1926841_34	COG	COG1193	dsDNA-specific endonuclease/ATPase MutS2	NA
UHGV-1926841_34	Structural annotation	PF01076, NF041497	NA	NA
UHGV-1926841_35	UniRef90	UniRef90_A0A174WCU2	Lipocalin-like domain-containing protein	NA
UHGV-1926841_35	eggNOG-mapper	1121101.HMPREF1532_01601	Lipocalin-like domain	NA
UHGV-1926841_35	Pfam	PF13648	Lipocalin-like domain	Lipocalin_4
UHGV-1926841_35	Structural annotation	PF11032, TIGR03066	NA	NA
UHGV-1926841_36	KOfam	K18809	TL; protein toll	NA
UHGV-1926841_36	PHROG	phrog_35892	NA	unknown function
UHGV-1926841_36	UniRef90	UniRef90_A0A4Q5HVI3	Leucine-rich repeat protein	NA
UHGV-1926841_36	eggNOG-mapper	1235788.C802_04378	Putative binding domain, N-terminal	NA
UHGV-1926841_36	Pfam	PF13004	Putative binding domain, N-terminal	BACON
UHGV-1926841_36	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-1926841_36	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-1926841_36	COG	COG5492	NA	NA
UHGV-1926841_39	PHROG	phrog_28300	NA	unknown function
UHGV-1926841_42	eggNOG-mapper	365044.Pnap_1043	NA	NA
UHGV-1926841_44	PHROG	phrog_12005	NA	unknown function
UHGV-1926841_46	PHROG	phrog_874	NA	unknown function
UHGV-1926841_46	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-1926841_46	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1926841_48	PHROG	phrog_9236	pyrophosphatase	other
UHGV-1926841_48	UniRef90	UniRef90_F3QSQ5	Conserved domain protein	NA
UHGV-1926841_48	eggNOG-mapper	1122971.BAME01000163_gene6622	NA	NA