UHGV-1927682

Genome information

Genome length 36,316 bps

CDS count 58

Completeness 91.01% (high-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-1927682
vOTU ID	vOTU-062104
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300007111\|Ga0102634_100064\|provirus_58075_108861
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.01% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.12
Jumbo phage	No

Genome content
Genome length	36,316 bps
GC content	44.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	95.28%
Average CDS length	600.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1927682_3	PHROG	phrog_25979	NA	unknown function
UHGV-1927682_3	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-1927682_4	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-1927682_4	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-1927682_5	PHROG	phrog_5867	endolysin	lysis
UHGV-1927682_5	UniRef90	UniRef90_C9LPB8	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1927682_5	eggNOG-mapper	592028.GCWU000321_01397	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1927682_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1927682_5	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1927682_5	Structural annotation	MF_04111	NA	NA
UHGV-1927682_6	UniRef90	UniRef90_UPI0013E08A9E	phage holin family protein	NA
UHGV-1927682_6	eggNOG-mapper	592028.GCWU000321_01396	Bacteriophage holin family	NA
UHGV-1927682_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1927682_6	Structural annotation	TIGR01593	NA	NA
UHGV-1927682_7	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-1927682_8	PHROG	phrog_21765	NA	unknown function
UHGV-1927682_8	eggNOG-mapper	1111454.HMPREF1250_0267	NA	NA
UHGV-1927682_9	PHROG	phrog_19099	NA	unknown function
UHGV-1927682_9	eggNOG-mapper	592028.GCWU000321_01393	NA	NA
UHGV-1927682_10	PHROG	phrog_4062	NA	unknown function
UHGV-1927682_11	PHROG	phrog_2427	NA	unknown function
UHGV-1927682_12	PHROG	phrog_1101	tail protein	tail
UHGV-1927682_12	UniRef90	UniRef90_C9LPB1	Phage-tail_3 domain-containing protein	NA
UHGV-1927682_12	eggNOG-mapper	592028.GCWU000321_01390	Putative phage tail protein	NA
UHGV-1927682_12	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-1927682_12	COG	COG1511	NA	NA
UHGV-1927682_12	Structural annotation	PF13550, PF02010, MF_04116, NF040662, NF040520, COG4733	NA	NA
UHGV-1927682_13	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-1927682_13	PHROG	phrog_329	minor tail protein	tail
UHGV-1927682_13	UniRef90	UniRef90_C9LPB0	NlpC/P60 family protein	NA
UHGV-1927682_13	eggNOG-mapper	592028.GCWU000321_01389	NlpC/P60 family	NA
UHGV-1927682_13	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1927682_13	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1927682_13	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-1927682_14	PHROG	phrog_778	tail assembly protein	tail
UHGV-1927682_14	UniRef90	UniRef90_C9LPA9	NA	NA
UHGV-1927682_14	eggNOG-mapper	592028.GCWU000321_01388	NA	NA
UHGV-1927682_14	Pfam	PF09931	NA	DUF2163
UHGV-1927682_14	COG	COG5449	NA	NA
UHGV-1927682_14	Structural annotation	PF09931, TIGR01600, COG4672	NA	NA
UHGV-1927682_15	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-1927682_15	UniRef90	UniRef90_C9LPA8	TIGR02217 family protein	NA
UHGV-1927682_15	eggNOG-mapper	592028.GCWU000321_01387	NA	NA
UHGV-1927682_15	Pfam	PF09343	NA	DUF2460
UHGV-1927682_15	COG	COG5448	NA	NA
UHGV-1927682_15	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-1927682_16	PHROG	phrog_12798	NA	unknown function
UHGV-1927682_16	UniRef90	UniRef90_A0A3B9DV14	TMP_3 domain-containing protein	NA
UHGV-1927682_16	eggNOG-mapper	1000569.HMPREF1040_0188	tape measure	NA
UHGV-1927682_16	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1927682_16	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1927682_16	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-1927682_16	Structural annotation	PF20155, TIGR01760, NF033930, COG3941	NA	NA
UHGV-1927682_17	eggNOG-mapper	1000569.HMPREF1040_0189	NA	NA
UHGV-1927682_18	Structural annotation	PF11836	NA	NA
UHGV-1927682_19	PHROG	phrog_1407	major tail protein	tail
UHGV-1927682_19	UniRef90	UniRef90_A0A380NJ51	Predicted secreted protein	NA
UHGV-1927682_19	eggNOG-mapper	1000569.HMPREF1040_0191	Phage tail tube protein	NA
UHGV-1927682_19	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1927682_19	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-1927682_19	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-1927682_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1927682_20	eggNOG-mapper	568816.Acin_1232	NA	NA
UHGV-1927682_20	Structural annotation	PF08873, COG5003	NA	NA
UHGV-1927682_21	eggNOG-mapper	568816.Acin_1233	NA	NA
UHGV-1927682_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1927682_22	UniRef90	UniRef90_UPI000F8E0EA5	HK97 gp10 family phage protein	NA
UHGV-1927682_22	eggNOG-mapper	706434.HMPREF9429_00523	Phage virion morphogenesis	NA
UHGV-1927682_22	COG	COG5005	NA	NA
UHGV-1927682_22	Structural annotation	TIGR01725	NA	NA
UHGV-1927682_23	PHROG	phrog_15682	NA	unknown function
UHGV-1927682_23	UniRef90	UniRef90_J5WK97	Rho termination factor, N-terminal domain protein	NA
UHGV-1927682_23	eggNOG-mapper	1294142.CINTURNW_1030	NA	NA
UHGV-1927682_24	PHROG	phrog_212	major head protein	head and packaging
UHGV-1927682_24	UniRef90	UniRef90_A0A7Z0TEG2	Phage capsid protein	NA
UHGV-1927682_24	eggNOG-mapper	1321779.HMPREF1984_01306	NA	NA
UHGV-1927682_24	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-1927682_25	UniRef90	UniRef90_A0A6N3AJF1	Chromosome partition protein Smc	NA
UHGV-1927682_25	eggNOG-mapper	888060.HMPREF9081_1551	NA	NA
UHGV-1927682_25	Structural annotation	PF06810	NA	NA
UHGV-1927682_26	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-1927682_26	UniRef90	UniRef90_S7IX76	Putative inner membrane protein	NA
UHGV-1927682_26	eggNOG-mapper	1273103.NM10_11541	NA	NA
UHGV-1927682_26	Pfam	PF10097	NA	DUF2335
UHGV-1927682_26	COG	COG5346	NA	NA
UHGV-1927682_26	Structural annotation	PF10097, COG5346	NA	NA
UHGV-1927682_29	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-1927682_29	UniRef90	UniRef90_R7PPR8	Ntox50 domain-containing protein	NA
UHGV-1927682_29	eggNOG-mapper	1123489.AUAN01000010_gene362	NA	NA
UHGV-1927682_29	Pfam	PF21814	NA	DUF6883
UHGV-1927682_29	Structural annotation	PF21814	NA	NA
UHGV-1927682_30	PHROG	phrog_145	portal protein	head and packaging
UHGV-1927682_30	UniRef90	UniRef90_R6WQ48	Conserved domain protein	NA
UHGV-1927682_30	eggNOG-mapper	706434.HMPREF9429_00529	NA	NA
UHGV-1927682_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1927682_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1927682_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1927682_31	UniRef90	UniRef90_A0A316LP82	PBSX family phage terminase large subunit	NA
UHGV-1927682_31	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-1927682_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1927682_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1927682_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1927682_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-1927682_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1927682_32	PHROG	phrog_6299	terminase small subunit	head and packaging
UHGV-1927682_32	eggNOG-mapper	1226322.HMPREF1545_03543	NA	NA
UHGV-1927682_32	Structural annotation	PF10668	NA	NA
UHGV-1927682_33	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1927682_33	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1927682_33	UniRef90	UniRef90_UPI0008EC3414	site-specific DNA-methyltransferase	NA
UHGV-1927682_33	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-1927682_33	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1927682_33	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1927682_33	COG	COG0863	DNA modification methylase	NA
UHGV-1927682_34	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1927682_34	UniRef90	UniRef90_R6AVI7	ParB domain-containing protein	NA
UHGV-1927682_34	eggNOG-mapper	1123288.SOV_2c03720	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1927682_34	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1927682_34	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1927682_34	COG	COG0863	DNA modification methylase	NA
UHGV-1927682_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1927682_35	eggNOG-mapper	706434.HMPREF9429_00383	NA	NA
UHGV-1927682_35	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-1927682_36	PHROG	phrog_1672	NA	unknown function
UHGV-1927682_36	UniRef90	UniRef90_A0A8B6ILJ5	NA	NA
UHGV-1927682_36	eggNOG-mapper	910314.HMPREF9220_1101	NA	NA
UHGV-1927682_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1927682_37	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1927682_37	UniRef90	UniRef90_A0A134CHV4	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-1927682_37	eggNOG-mapper	910314.HMPREF9220_1104	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1927682_37	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1927682_37	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1927682_38	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1927682_38	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1927682_38	UniRef90	UniRef90_UPI001475C7F0	phage antirepressor KilAC domain-containing protein	NA
UHGV-1927682_38	eggNOG-mapper	1151292.QEW_0652	BRO family, N-terminal domain	NA
UHGV-1927682_38	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1927682_38	COG	COG3617	Prophage antirepressor	NA
UHGV-1927682_38	Structural annotation	PF03374, PF02498, COG3645	NA	NA
UHGV-1927682_40	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1927682_40	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1927682_40	UniRef90	UniRef90_C9LLV4	Single-stranded DNA-binding protein	NA
UHGV-1927682_40	eggNOG-mapper	592028.GCWU000321_00485	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1927682_40	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1927682_40	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1927682_40	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1927682_40	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1927682_40	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-1927682_41	Structural annotation	PF17887	NA	NA
UHGV-1927682_42	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1927682_42	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1927682_42	UniRef90	UniRef90_R6BBB2	DNA replication protein DnaC	NA
UHGV-1927682_42	eggNOG-mapper	1280706.AUJE01000003_gene2277	DNA-dependent DNA replication	NA
UHGV-1927682_42	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1927682_42	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1927682_42	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-1927682_43	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1927682_43	UniRef90	UniRef90_UPI00069DD2AD	NA	NA
UHGV-1927682_43	eggNOG-mapper	706434.HMPREF9429_00772	NA	NA
UHGV-1927682_43	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1927682_43	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1927682_43	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-1927682_44	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1927682_44	UniRef90	UniRef90_UPI001CD7177D	NA	NA
UHGV-1927682_44	eggNOG-mapper	936573.HMPREF1147_1315	NA	NA
UHGV-1927682_44	Pfam	PF14359	NA	DUF4406
UHGV-1927682_44	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-1927682_45	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1927682_45	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1927682_45	UniRef90	UniRef90_A0A316M5N2	Recombinase RecT	NA
UHGV-1927682_45	eggNOG-mapper	1273103.NM10_01169	Recombinase, phage RecT family	NA
UHGV-1927682_45	Pfam	PF03837	RecT family	RecT
UHGV-1927682_45	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1927682_45	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1927682_45	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1927682_46	PHROG	phrog_14808	NA	unknown function
UHGV-1927682_46	eggNOG-mapper	679201.HMPREF9334_00304	NA	NA
UHGV-1927682_47	Structural annotation	PF17020, MF_01549, TIGR00405, COG1862	NA	NA
UHGV-1927682_48	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1927682_48	UniRef90	UniRef90_A0A134CHS9	YqaJ viral recombinase family protein	NA
UHGV-1927682_48	eggNOG-mapper	1273103.NM10_01174	YqaJ viral recombinase family protein	NA
UHGV-1927682_48	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1927682_48	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1927682_48	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1927682_48	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1927682_52	PHROG	phrog_14367	NA	unknown function
UHGV-1927682_52	UniRef90	UniRef90_E4L8C9	LysM domain-containing protein	NA
UHGV-1927682_52	eggNOG-mapper	1123288.SOV_5c02190	Lysin motif	NA
UHGV-1927682_52	COG	COG1388	LysM repeat	NA
UHGV-1927682_52	Structural annotation	PF01476, MF_02014, NF010723, COG1388	NA	NA
UHGV-1927682_54	Structural annotation	PF09035, TIGR01764, COG3311	NA	NA
UHGV-1927682_55	eggNOG-mapper	910314.HMPREF9220_0645	NA	NA
UHGV-1927682_55	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-1927682_56	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1927682_56	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1927682_56	UniRef90	UniRef90_E4L8D2	Repressor LexA	NA
UHGV-1927682_56	eggNOG-mapper	910314.HMPREF9220_1115	Peptidase S24-like	NA
UHGV-1927682_56	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1927682_56	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1927682_56	NCBIFam	TIGR00498.1	transcriptional repressor LexA	NA
UHGV-1927682_56	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1927682_56	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974	NA	NA
UHGV-1927682_57	UniRef90	UniRef90_UPI0005C81FAE	SHOCT domain-containing protein	NA
UHGV-1927682_57	eggNOG-mapper	1232428.CAVO010000017_gene930	NA	NA
UHGV-1927682_57	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-1927682_58	KOfam	K14059	int; integrase	NA
UHGV-1927682_58	PHROG	phrog_1	integrase	integration and excision
UHGV-1927682_58	UniRef90	UniRef90_A0A316LPC8	Site-specific integrase	NA
UHGV-1927682_58	eggNOG-mapper	1273103.NM10_02432	Phage integrase family	NA
UHGV-1927682_58	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1927682_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1927682_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1927682_58	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA