UHGV-1927685

Genome information

Genome length 36,996 bps

CDS count 63

Completeness 99.90% (high-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-1927685
vOTU ID	vOTU-007572
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300007111\|Ga0102634_100095\|provirus_43661_82043
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55
Jumbo phage	No

Genome content
Genome length	36,996 bps
GC content	55.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	89.90%
Average CDS length	533.05 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1927685_1	KOfam	K14059	int; integrase	NA
UHGV-1927685_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1927685_1	UniRef90	UniRef90_A0A6N7TNW8	Tyrosine-type recombinase/integrase	NA
UHGV-1927685_1	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-1927685_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1927685_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1927685_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1927685_1	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-1927685_3	eggNOG-mapper	1280676.AUJO01000009_gene1947	NA	NA
UHGV-1927685_3	Structural annotation	PF02556, MF_00821, NF004392, COG1952	NA	NA
UHGV-1927685_4	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-1927685_4	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-1927685_4	UniRef90	UniRef90_A0A6N7TQ25	Helix-turn-helix domain-containing protein	NA
UHGV-1927685_4	eggNOG-mapper	748224.HMPREF9436_03379	sequence-specific DNA binding	NA
UHGV-1927685_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1927685_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1927685_5	UniRef90	UniRef90_A0A6N7TMW8	HTH cro/C1-type domain-containing protein	NA
UHGV-1927685_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1927685_8	PHROG	phrog_1221	NA	unknown function
UHGV-1927685_8	UniRef90	UniRef90_E2ZNU3	Phage/plasmid-related protein TIGR03299	NA
UHGV-1927685_8	eggNOG-mapper	748224.HMPREF9436_03374	NA	NA
UHGV-1927685_8	Pfam	PF06067	NA	DUF932
UHGV-1927685_8	NCBIFam	TIGR03299.1	phage/plasmid-like protein TIGR03299	NA
UHGV-1927685_8	Structural annotation	PF06067, TIGR03299	NA	NA
UHGV-1927685_10	PHROG	phrog_7711	NA	unknown function
UHGV-1927685_10	UniRef90	UniRef90_UPI001C38CAD2	Lar family restriction alleviation protein	NA
UHGV-1927685_10	eggNOG-mapper	1304866.K413DRAFT_1204	NA	NA
UHGV-1927685_12	UniRef90	UniRef90_A0A6N7TQ12	Helix-turn-helix domain-containing protein	NA
UHGV-1927685_12	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1927685_13	UniRef90	UniRef90_UPI00130EBC54	NA	NA
UHGV-1927685_13	eggNOG-mapper	762051.LKI_01980	NA	NA
UHGV-1927685_13	Pfam	PF05339	NA	DUF739
UHGV-1927685_13	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1927685_13	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-1927685_18	PHROG	phrog_38771	NA	unknown function
UHGV-1927685_19	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1927685_19	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-1927685_19	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-1927685_19	Pfam	PF04404	ERF superfamily	ERF
UHGV-1927685_19	Structural annotation	PF04404, COG4712	NA	NA
UHGV-1927685_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1927685_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1927685_20	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-1927685_20	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1927685_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1927685_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1927685_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1927685_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1927685_20	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-1927685_22	PHROG	phrog_15768	NA	unknown function
UHGV-1927685_22	UniRef90	UniRef90_A0A844EFV2	NA	NA
UHGV-1927685_22	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-1927685_22	Pfam	PF19808	NA	DUF6291
UHGV-1927685_22	Structural annotation	PF19808	NA	NA
UHGV-1927685_23	Structural annotation	PF11417	NA	NA
UHGV-1927685_24	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1927685_24	UniRef90	UniRef90_E2ZNS5	Siphovirus Gp157	NA
UHGV-1927685_24	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-1927685_24	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1927685_24	Structural annotation	PF05565	NA	NA
UHGV-1927685_25	UniRef90	UniRef90_A0A845R8R0	NA	NA
UHGV-1927685_28	PHROG	phrog_6568	NA	unknown function
UHGV-1927685_28	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-1927685_30	PHROG	phrog_3253	NA	unknown function
UHGV-1927685_30	UniRef90	UniRef90_A0A2J4JRQ6	Resolvase	NA
UHGV-1927685_30	eggNOG-mapper	1151292.QEW_3282	NA	NA
UHGV-1927685_30	Structural annotation	PF18618	NA	NA
UHGV-1927685_33	PHROG	phrog_3136	NA	unknown function
UHGV-1927685_33	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-1927685_33	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-1927685_33	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1927685_33	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-1927685_34	KOfam	K03700	recU; recombination protein U	NA
UHGV-1927685_34	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1927685_34	UniRef90	UniRef90_A0A1C5P0D5	Holliday junction resolvase RecU	NA
UHGV-1927685_34	eggNOG-mapper	748224.HMPREF9436_03347	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-1927685_34	Pfam	PF03838	Recombination protein U	RecU
UHGV-1927685_34	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-1927685_34	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-1927685_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1927685_35	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-1927685_37	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1927685_37	UniRef90	UniRef90_E2ZNR4	ParB domain-containing protein	NA
UHGV-1927685_37	eggNOG-mapper	748224.HMPREF9436_03344	ParB-like nuclease domain	NA
UHGV-1927685_37	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1927685_37	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1927685_37	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1927685_38	PHROG	phrog_13321	NA	unknown function
UHGV-1927685_38	UniRef90	UniRef90_E2ZNR3	Radical SAM domain protein	NA
UHGV-1927685_38	eggNOG-mapper	748224.HMPREF9436_03343	DNA photolyase activity	NA
UHGV-1927685_38	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-1927685_38	COG	COG1533	DNA repair photolyase	NA
UHGV-1927685_38	Structural annotation	PF20903, MF_00660, NF033668, COG1180	NA	NA
UHGV-1927685_39	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1927685_39	UniRef90	UniRef90_UPI000AC737F1	helix-turn-helix domain containing protein	NA
UHGV-1927685_39	eggNOG-mapper	748224.HMPREF9436_03342	transposase activity	NA
UHGV-1927685_39	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1927685_39	Structural annotation	PF07141	NA	NA
UHGV-1927685_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1927685_40	PHROG	phrog_10250	NA	unknown function
UHGV-1927685_40	UniRef90	UniRef90_E2ZNR1	Phage terminase, large subunit, PBSX family	NA
UHGV-1927685_40	eggNOG-mapper	748224.HMPREF9436_03341	Phage terminase, large subunit, PBSX family	NA
UHGV-1927685_40	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1927685_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-1927685_40	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1927685_41	PHROG	phrog_533	portal protein	head and packaging
UHGV-1927685_41	UniRef90	UniRef90_E2ZNR0	Putative phage minor capsid protein	NA
UHGV-1927685_41	eggNOG-mapper	748224.HMPREF9436_03340	NA	NA
UHGV-1927685_41	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1927685_42	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1927685_42	UniRef90	UniRef90_UPI001CBDED93	phage minor capsid protein	NA
UHGV-1927685_42	eggNOG-mapper	748224.HMPREF9436_03339	NA	NA
UHGV-1927685_42	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1927685_42	COG	COG2369	NA	NA
UHGV-1927685_42	Structural annotation	PF06152	NA	NA
UHGV-1927685_45	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1927685_45	UniRef90	UniRef90_E6U604	Minor structural GP20 protein	NA
UHGV-1927685_45	eggNOG-mapper	663278.Ethha_0093	NA	NA
UHGV-1927685_45	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1927685_45	Structural annotation	PF06810	NA	NA
UHGV-1927685_46	PHROG	phrog_10	major head protein	head and packaging
UHGV-1927685_46	UniRef90	UniRef90_A0A2A7AII3	Phage major capsid protein	NA
UHGV-1927685_46	eggNOG-mapper	1120998.AUFC01000030_gene2236	Phage capsid family	NA
UHGV-1927685_46	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1927685_46	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1927685_46	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1927685_46	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1927685_47	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1927685_48	PHROG	phrog_3366	NA	unknown function
UHGV-1927685_48	Structural annotation	PF20536	NA	NA
UHGV-1927685_49	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1927685_49	UniRef90	UniRef90_A0A2A6Z736	Capsid protein	NA
UHGV-1927685_49	eggNOG-mapper	748224.HMPREF9436_03332	Minor capsid protein	NA
UHGV-1927685_49	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1927685_49	Structural annotation	PF11114	NA	NA
UHGV-1927685_50	PHROG	phrog_3266	tail completion	connector
UHGV-1927685_50	UniRef90	UniRef90_UPI001F2730AA	chloramphenicol resistance protein	NA
UHGV-1927685_50	eggNOG-mapper	748224.HMPREF9436_03331	NA	NA
UHGV-1927685_50	Structural annotation	PF12691	NA	NA
UHGV-1927685_51	PHROG	phrog_820	major tail protein	tail
UHGV-1927685_51	eggNOG-mapper	748224.HMPREF9436_03330	NA	NA
UHGV-1927685_51	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1927685_52	PHROG	phrog_4450	NA	unknown function
UHGV-1927685_52	Structural annotation	PF20378	NA	NA
UHGV-1927685_53	PHROG	phrog_706	NA	unknown function
UHGV-1927685_53	UniRef90	UniRef90_E2ZNP9	Bacteriophage Gp15 protein	NA
UHGV-1927685_53	eggNOG-mapper	748224.HMPREF9436_03328	Bacteriophage Gp15 protein	NA
UHGV-1927685_53	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1927685_53	Structural annotation	PF06854	NA	NA
UHGV-1927685_54	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-1927685_54	UniRef90	UniRef90_E2ZNP7	Phage tail tape measure protein, TP901 family	NA
UHGV-1927685_54	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-1927685_54	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1927685_54	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1927685_54	COG	COG5283	Phage-related tail protein	NA
UHGV-1927685_54	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1927685_55	UniRef90	UniRef90_UPI00130E98E0	phage tail family protein	NA
UHGV-1927685_55	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-1927685_56	PHROG	phrog_36410	NA	unknown function
UHGV-1927685_56	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-1927685_57	PHROG	phrog_538	minor tail protein	tail
UHGV-1927685_57	UniRef90	UniRef90_UPI0011064D4D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1927685_57	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-1927685_57	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1927685_57	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1927685_58	PHROG	phrog_9534	head protein	head and packaging
UHGV-1927685_58	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-1927685_58	Structural annotation	PF20747	NA	NA
UHGV-1927685_60	PHROG	phrog_28526	NA	unknown function
UHGV-1927685_60	UniRef90	UniRef90_UPI00156FE2AD	NA	NA
UHGV-1927685_60	eggNOG-mapper	748224.HMPREF9436_00155	NA	NA
UHGV-1927685_60	Pfam	PF04255	NA	DUF433
UHGV-1927685_61	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-1927685_61	PHROG	phrog_894	endolysin	lysis
UHGV-1927685_61	UniRef90	UniRef90_A0A1C5NY12	Zinc D-Ala-D-Ala carboxypeptidase	NA
UHGV-1927685_61	eggNOG-mapper	748224.HMPREF9436_03320	Peptidase M15	NA
UHGV-1927685_61	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-1927685_61	COG	COG3108	NA	NA
UHGV-1927685_61	Structural annotation	PF05951, COG3108	NA	NA
UHGV-1927685_62	PHROG	phrog_1863	NA	unknown function
UHGV-1927685_62	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-1927685_63	PHROG	phrog_263	holin	lysis
UHGV-1927685_63	UniRef90	UniRef90_E2ZIC2	Holin, SPP1 family	NA
UHGV-1927685_63	eggNOG-mapper	748224.HMPREF9436_01413	SPP1 phage holin	NA
UHGV-1927685_63	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-1927685_63	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-1927685_63	Structural annotation	PF04688, TIGR01592	NA	NA