UHGV-1928028

Genome information

vOTU vOTU-020214

Genome length 33,762 bps

CDS count 33

Completeness 81.51% (medium-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-1928028
vOTU ID	vOTU-020214
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300007805\|Ga0105637_100516
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.51% (medium-quality)
CheckV contamination	23.11%
Trimmed provirus	Yes
CheckV viral markers	22
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.91
Jumbo phage	No

Genome content
Genome length	33,762 bps
GC content	39.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	92.57%
Average CDS length	948.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1928028_2	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1928028_2	UniRef90	UniRef90_A7B3R2	Siphovirus Gp157	NA
UHGV-1928028_2	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-1928028_2	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1928028_2	Structural annotation	PF05565	NA	NA
UHGV-1928028_3	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1928028_3	UniRef90	UniRef90_UPI00195E1D01	AAA family ATPase	NA
UHGV-1928028_3	eggNOG-mapper	1235792.C808_05390	AAA domain	NA
UHGV-1928028_3	Pfam	PF13479	AAA domain	AAA_24
UHGV-1928028_3	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-1928028_4	PHROG	phrog_2698	NA	unknown function
UHGV-1928028_4	UniRef90	UniRef90_A0A3D5UGJ1	NA	NA
UHGV-1928028_4	eggNOG-mapper	1123511.KB905868_gene200	NA	NA
UHGV-1928028_4	Structural annotation	PF05037	NA	NA
UHGV-1928028_5	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-1928028_5	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1928028_5	UniRef90	UniRef90_A0A2K9P635	DEAD/DEAH box helicase	NA
UHGV-1928028_5	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-1928028_5	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-1928028_5	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1928028_5	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1928028_5	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1928028_5	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-1928028_6	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-1928028_6	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1928028_6	UniRef90	UniRef90_A0A316PCV6	DNA primase	NA
UHGV-1928028_6	eggNOG-mapper	1232449.BAHV02000008_gene621	Primase C terminal 2 (PriCT-2)	NA
UHGV-1928028_6	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-1928028_6	Pfam	PF13481	AAA domain	AAA_25
UHGV-1928028_6	COG	COG3598	RecA-family ATPase	NA
UHGV-1928028_6	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-1928028_7	PHROG	phrog_16687	NA	unknown function
UHGV-1928028_7	eggNOG-mapper	1123511.KB905868_gene197	NA	NA
UHGV-1928028_8	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1928028_8	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1928028_8	UniRef90	UniRef90_A0A316PB58	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1928028_8	eggNOG-mapper	1235792.C808_05386	Endodeoxyribonuclease RusA	NA
UHGV-1928028_8	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1928028_8	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1928028_8	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1928028_10	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-1928028_10	UniRef90	UniRef90_A0A2K9P078	NA	NA
UHGV-1928028_10	eggNOG-mapper	881915.E1Y3U1_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-1928028_10	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-1928028_10	Structural annotation	PF18909	NA	NA
UHGV-1928028_11	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1928028_11	UniRef90	UniRef90_A0A2K9P072	RNA polymerase subunit sigma-24	NA
UHGV-1928028_11	eggNOG-mapper	1347392.CCEZ01000005_gene1225	NA	NA
UHGV-1928028_11	Structural annotation	PF02996	NA	NA
UHGV-1928028_12	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1928028_12	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1928028_12	UniRef90	UniRef90_A0A316P9E5	Terminase small subunit	NA
UHGV-1928028_12	eggNOG-mapper	608534.GCWU000341_02298	Terminase small subunit	NA
UHGV-1928028_12	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1928028_12	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1928028_12	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1928028_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1928028_13	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1928028_13	UniRef90	UniRef90_A0A2K9NYT9	Terminase large subunit	NA
UHGV-1928028_13	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-1928028_13	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1928028_13	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1928028_13	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1928028_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-1928028_13	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1928028_14	PHROG	phrog_64	portal protein	head and packaging
UHGV-1928028_14	UniRef90	UniRef90_A0A316PF49	Phage portal protein	NA
UHGV-1928028_14	eggNOG-mapper	562981.HMPREF0428_01823	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1928028_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1928028_14	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1928028_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1928028_15	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1928028_15	UniRef90	UniRef90_A0A316P952	Phage head morphogenesis protein	NA
UHGV-1928028_15	eggNOG-mapper	1280689.AUJC01000003_gene964	Phage Mu protein F like protein	NA
UHGV-1928028_15	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1928028_15	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1928028_15	COG	COG2369	NA	NA
UHGV-1928028_15	Structural annotation	PF21814, PF04233, TIGR01641, COG2369	NA	NA
UHGV-1928028_17	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1928028_17	UniRef90	UniRef90_A0A316PB67	NA	NA
UHGV-1928028_17	eggNOG-mapper	1235800.C819_00486	NA	NA
UHGV-1928028_17	Pfam	PF14265	NA	DUF4355
UHGV-1928028_17	Structural annotation	PF14265	NA	NA
UHGV-1928028_18	PHROG	phrog_544	major head protein	head and packaging
UHGV-1928028_18	UniRef90	UniRef90_A0A316P9D7	N4-gp56 family major capsid protein	NA
UHGV-1928028_18	eggNOG-mapper	1484479.DI14_04775	NA	NA
UHGV-1928028_18	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1928028_18	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1928028_19	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1928028_19	UniRef90	UniRef90_A0A6N2R673	Phage gp6-like head-tail connector protein	NA
UHGV-1928028_19	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-1928028_19	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1928028_19	Structural annotation	PF05135	NA	NA
UHGV-1928028_20	eggNOG-mapper	1345695.CLSA_c29900	NA	NA
UHGV-1928028_21	PHROG	phrog_78	tail terminator	connector
UHGV-1928028_21	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-1928028_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1928028_22	UniRef90	UniRef90_A0A2K9NYU7	Phage capsid and scaffold	NA
UHGV-1928028_22	eggNOG-mapper	1280.SAXN108_1926	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1928028_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1928028_22	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1928028_22	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1928028_23	PHROG	phrog_88	major tail protein	tail
UHGV-1928028_23	UniRef90	UniRef90_A0A1C6E366	Phage major tail protein, phi13 family	NA
UHGV-1928028_23	eggNOG-mapper	927704.SELR_18160	Phage major tail protein, phi13 family	NA
UHGV-1928028_23	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1928028_23	COG	COG5492	NA	NA
UHGV-1928028_23	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1928028_25	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-1928028_25	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-1928028_25	UniRef90	UniRef90_A0A316PD60	Phage tail tape measure protein	NA
UHGV-1928028_25	eggNOG-mapper	1225805.J7KGW1_9CAUD	peptidoglycan catabolic process	NA
UHGV-1928028_25	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1928028_25	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1928028_25	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1928028_26	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1928028_26	UniRef90	UniRef90_A0A2K9P0W7	Phage tail protein	NA
UHGV-1928028_26	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1928028_26	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1928028_26	COG	COG4722	Phage-related protein YomH	NA
UHGV-1928028_26	Structural annotation	PF05709, PF21766, TIGR01633, COG4722	NA	NA
UHGV-1928028_27	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1928028_27	UniRef90	UniRef90_A0A2K9P036	Phage minor structural protein	NA
UHGV-1928028_27	eggNOG-mapper	649747.HMPREF0083_00991	Prophage endopeptidase tail	NA
UHGV-1928028_27	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-1928028_27	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1928028_27	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1928028_27	COG	COG4926	Phage-related protein	NA
UHGV-1928028_27	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-1928028_28	UniRef90	UniRef90_A0A316P9E8	Cu_amine_oxidN1 domain-containing protein	NA
UHGV-1928028_28	eggNOG-mapper	1408422.JHYF01000017_gene1892	NA	NA
UHGV-1928028_28	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-1928028_29	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-1928028_29	UniRef90	UniRef90_UPI001C670094	ORF6N domain-containing protein	NA
UHGV-1928028_29	eggNOG-mapper	997346.HMPREF9374_1154	BRO family, N-terminal domain	NA
UHGV-1928028_29	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-1928028_29	COG	COG3617	Prophage antirepressor	NA
UHGV-1928028_29	Structural annotation	PF10543, PF03374, TIGR02681, COG3646	NA	NA
UHGV-1928028_31	KOfam	K01190	lacZ; beta-galactosidase [EC:3.2.1.23]	NA
UHGV-1928028_31	UniRef90	UniRef90_A0A316PEZ7	Beta-galactosidase	NA
UHGV-1928028_31	eggNOG-mapper	742733.HMPREF9469_00974	Belongs to the glycosyl hydrolase 2 family	NA
UHGV-1928028_31	PADLOC	CARF_m8--CARF_Beta-galactosidase_LolE_TM_CARF_m8--CARF_Beta-galactosidase_LolE_TM	NA	CRISPR-CAS
UHGV-1928028_31	Pfam	PF02837	Glycosyl hydrolases family 2, sugar binding domain	Glyco_hydro_2_N
UHGV-1928028_31	Pfam	PF00703	Glycosyl hydrolases family 2	Glyco_hydro_2
UHGV-1928028_31	Pfam	PF02836	Glycosyl hydrolases family 2, TIM barrel domain	Glyco_hydro_2_C
UHGV-1928028_31	COG	COG3250	Beta-galactosidase/beta-glucuronidase	NA
UHGV-1928028_33	PHROG	phrog_263	holin	lysis
UHGV-1928028_33	UniRef90	UniRef90_A0A316PF34	Phage holin	NA
UHGV-1928028_33	eggNOG-mapper	1158607.UAU_01779	SPP1 phage holin	NA
UHGV-1928028_33	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-1928028_33	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-1928028_33	Structural annotation	PF04688	NA	NA