UHGV-1928222

Genome information

Genome length 30,441 bps

CDS count 48

Completeness 70.45% (medium-quality)

geNomad score 0.9746

Prediction confidence Confident

Genome information
Genome ID	UHGV-1928222
vOTU ID	vOTU-023393
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300007798\|Ga0105755_100785
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.45% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9746
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.1
Jumbo phage	No

Genome content
Genome length	30,441 bps
GC content	50.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	88.29%
Average CDS length	562.06 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1928222_1	PHROG	phrog_20016	NA	unknown function
UHGV-1928222_1	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1928222_1	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1928222_1	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1928222_2	PHROG	phrog_28802	NA	unknown function
UHGV-1928222_3	KOfam	K14059	int; integrase	NA
UHGV-1928222_3	PHROG	phrog_1	integrase	integration and excision
UHGV-1928222_3	UniRef90	UniRef90_UPI0011AF8E34	tyrosine-type recombinase/integrase	NA
UHGV-1928222_3	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-1928222_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1928222_3	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1928222_3	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1928222_6	PHROG	phrog_87	metallo-protease	other
UHGV-1928222_6	UniRef90	UniRef90_UPI001966F635	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1928222_6	eggNOG-mapper	717606.PaecuDRAFT_3093	IrrE N-terminal-like domain	NA
UHGV-1928222_6	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1928222_6	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1928222_6	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1928222_7	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1928222_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1928222_7	UniRef90	UniRef90_A0A2V2F7D3	HTH cro/C1-type domain-containing protein	NA
UHGV-1928222_7	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-1928222_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1928222_7	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-1928222_8	UniRef90	UniRef90_A0A372V3V8	XRE family transcriptional regulator	NA
UHGV-1928222_8	Structural annotation	PF10078, NF040507, COG3655	NA	NA
UHGV-1928222_9	Structural annotation	PF10743, NF033787	NA	NA
UHGV-1928222_15	eggNOG-mapper	742735.HMPREF9467_00844	NA	NA
UHGV-1928222_16	PHROG	phrog_4433	NA	unknown function
UHGV-1928222_16	eggNOG-mapper	665950.HMPREF1025_01373	regulation of DNA-templated transcription, elongation	NA
UHGV-1928222_16	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1928222_16	Structural annotation	NF007410	NA	NA
UHGV-1928222_18	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1928222_18	UniRef90	UniRef90_UPI0009E55993	NA	NA
UHGV-1928222_18	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-1928222_18	Pfam	PF06378	NA	DUF1071
UHGV-1928222_18	Structural annotation	PF06378, COG4712	NA	NA
UHGV-1928222_19	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1928222_19	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-1928222_19	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1928222_19	Pfam	PF05772	NinB protein	NinB
UHGV-1928222_19	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1928222_20	PHROG	phrog_7566	NA	unknown function
UHGV-1928222_20	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-1928222_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1928222_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1928222_21	UniRef90	UniRef90_A0A316PHP0	Single-stranded DNA-binding protein	NA
UHGV-1928222_21	eggNOG-mapper	665956.HMPREF1032_00430	Single-stranded DNA-binding protein	NA
UHGV-1928222_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1928222_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1928222_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1928222_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1928222_21	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-1928222_22	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1928222_22	UniRef90	UniRef90_UPI001EE2C20A	helix-turn-helix domain-containing protein	NA
UHGV-1928222_22	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-1928222_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1928222_22	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-1928222_23	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1928222_23	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1928222_23	UniRef90	UniRef90_A0A0W7TNB4	DNA helicase	NA
UHGV-1928222_23	eggNOG-mapper	665956.HMPREF1032_02618	Participates in initiation and elongation during chromosome replication	NA
UHGV-1928222_23	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1928222_23	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1928222_23	COG	COG0305	Replicative DNA helicase	NA
UHGV-1928222_23	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1928222_24	UniRef90	UniRef90_UPI00122F0554	helix-turn-helix domain-containing protein	NA
UHGV-1928222_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1928222_24	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1928222_25	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1928222_25	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1928222_25	UniRef90	UniRef90_UPI0006D84EB7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1928222_25	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1928222_25	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1928222_27	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1928222_27	PHROG	phrog_363	DNA methyltransferase	other
UHGV-1928222_27	UniRef90	UniRef90_A0A1C6HIB8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1928222_27	eggNOG-mapper	742738.HMPREF9460_04053	C-5 cytosine-specific DNA methylase	NA
UHGV-1928222_27	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1928222_27	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1928222_27	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1928222_27	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1928222_28	UniRef90	UniRef90_A0A4D7ANR2	Lar family restriction alleviation protein	NA
UHGV-1928222_28	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-1928222_28	Structural annotation	PF14354, NF007260	NA	NA
UHGV-1928222_30	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1928222_30	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-1928222_30	Structural annotation	NF001611, COG1694	NA	NA
UHGV-1928222_31	eggNOG-mapper	1121335.Clst_0383	NA	NA
UHGV-1928222_31	Structural annotation	PF04545	NA	NA
UHGV-1928222_32	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-1928222_32	UniRef90	UniRef90_A0A7X5DCK0	LPD15 domain-containing protein	NA
UHGV-1928222_32	eggNOG-mapper	657322.FPR_26770	NA	NA
UHGV-1928222_32	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-1928222_33	UniRef90	UniRef90_A0A2K4ZGQ9	DarA_C domain-containing protein	NA
UHGV-1928222_35	PHROG	phrog_25027	NA	unknown function
UHGV-1928222_35	UniRef90	UniRef90_A0A1Y3RPR4	ArdcN domain-containing protein	NA
UHGV-1928222_35	eggNOG-mapper	1399942.U3PBI8_9CAUD	NA	NA
UHGV-1928222_35	Structural annotation	PF08401	NA	NA
UHGV-1928222_37	PHROG	phrog_2412	NA	unknown function
UHGV-1928222_37	eggNOG-mapper	1122981.AUME01000026_gene531	NA	NA
UHGV-1928222_39	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-1928222_39	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1928222_39	UniRef90	UniRef90_UPI001F401ABC	terminase family protein	NA
UHGV-1928222_39	eggNOG-mapper	316274.Haur_1384	NA	NA
UHGV-1928222_39	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1928222_39	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-1928222_39	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-1928222_40	PHROG	phrog_156	portal protein	head and packaging
UHGV-1928222_40	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-1928222_40	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1928222_43	PHROG	phrog_35275	NA	unknown function
UHGV-1928222_43	eggNOG-mapper	1226322.HMPREF1545_03846	NA	NA
UHGV-1928222_44	PHROG	phrog_24113	NA	unknown function
UHGV-1928222_44	eggNOG-mapper	1226322.HMPREF1545_03847	NA	NA
UHGV-1928222_44	Structural annotation	PF11133, COG5471	NA	NA
UHGV-1928222_45	PHROG	phrog_371	major head protein	head and packaging
UHGV-1928222_45	UniRef90	UniRef90_UPI001F183EB8	Mu-like prophage major head subunit gpT family protein	NA
UHGV-1928222_45	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-1928222_45	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-1928222_45	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1928222_46	PHROG	phrog_13046	NA	unknown function
UHGV-1928222_46	eggNOG-mapper	1232449.BAHV02000016_gene1817	NA	NA
UHGV-1928222_46	Structural annotation	PF20387	NA	NA
UHGV-1928222_47	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-1928222_47	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-1928222_47	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-1928222_48	eggNOG-mapper	665956.HMPREF1032_03918	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	NA