UHGV-1930318

Genome information

vOTU vOTU-020268

Genome length 40,332 bps

CDS count 64

Completeness 87.88% (medium-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-1930318
vOTU ID	vOTU-020268
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300007802\|Ga0105667_100145\|provirus_44911_86764
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.96
Jumbo phage	No

Genome content
Genome length	40,332 bps
GC content	49.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	93.58%
Average CDS length	594.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1930318_2	UniRef90	UniRef90_R6TP76	RHH_1 domain-containing protein	NA
UHGV-1930318_2	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-1930318_2	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-1930318_5	PHROG	phrog_263	holin	lysis
UHGV-1930318_5	UniRef90	UniRef90_A0A3D5TN47	Phage holin	NA
UHGV-1930318_5	eggNOG-mapper	315750.BPUM_3085	SPP1 phage holin	NA
UHGV-1930318_5	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-1930318_5	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-1930318_5	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-1930318_6	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1930318_6	UniRef90	UniRef90_UPI000CFA6BAA	NA	NA
UHGV-1930318_6	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-1930318_6	Pfam	PF14359	NA	DUF4406
UHGV-1930318_6	Structural annotation	PF14359, COG3613	NA	NA
UHGV-1930318_7	PHROG	phrog_9428	NA	unknown function
UHGV-1930318_7	UniRef90	UniRef90_A0A3D5TMQ6	Serine/threonine protein kinase	NA
UHGV-1930318_7	eggNOG-mapper	1519439.JPJG01000059_gene1948	NA	NA
UHGV-1930318_8	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1930318_8	PHROG	phrog_435	endolysin	lysis
UHGV-1930318_8	UniRef90	UniRef90_A0A3D5TMB6	MurNAc-LAA domain-containing protein	NA
UHGV-1930318_8	eggNOG-mapper	1203606.HMPREF1526_00962	Ami_3	NA
UHGV-1930318_8	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1930318_8	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1930318_8	Structural annotation	PF01520, PF15591, MF_00562, TIGR02883, NF033202, COG0860	NA	NA
UHGV-1930318_9	PHROG	phrog_27545	NA	unknown function
UHGV-1930318_9	UniRef90	UniRef90_R6ELD6	Glycosyl hydrolase family 18 family protein	NA
UHGV-1930318_9	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-1930318_11	Structural annotation	PF02973	NA	NA
UHGV-1930318_12	Structural annotation	PF10651, NF009453	NA	NA
UHGV-1930318_14	PHROG	phrog_6616	tail protein	tail
UHGV-1930318_14	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-1930318_14	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1930318_15	PHROG	phrog_1194	NA	unknown function
UHGV-1930318_15	eggNOG-mapper	1211844.CBLM010000023_gene979	NA	NA
UHGV-1930318_15	Pfam	PF20458	NA	DUF6711
UHGV-1930318_15	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1930318_16	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1930318_16	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-1930318_16	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-1930318_16	COG	COG1511	NA	NA
UHGV-1930318_16	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-1930318_17	PHROG	phrog_706	NA	unknown function
UHGV-1930318_17	UniRef90	UniRef90_UPI00051C36A4	Gp15 family bacteriophage protein	NA
UHGV-1930318_17	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-1930318_17	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1930318_17	Structural annotation	PF06854	NA	NA
UHGV-1930318_18	PHROG	phrog_11299	NA	unknown function
UHGV-1930318_18	eggNOG-mapper	1298920.KI911353_gene2067	NA	NA
UHGV-1930318_18	Structural annotation	PF10666	NA	NA
UHGV-1930318_19	PHROG	phrog_3099	NA	unknown function
UHGV-1930318_19	eggNOG-mapper	1304866.K413DRAFT_3043	NA	NA
UHGV-1930318_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1930318_20	PHROG	phrog_3266	tail completion	connector
UHGV-1930318_20	eggNOG-mapper	1304866.K413DRAFT_3042	NA	NA
UHGV-1930318_20	Structural annotation	PF20765	NA	NA
UHGV-1930318_21	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1930318_21	UniRef90	UniRef90_UPI001B3C5A2B	minor capsid protein	NA
UHGV-1930318_21	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-1930318_21	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1930318_21	Structural annotation	PF11114	NA	NA
UHGV-1930318_22	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-1930318_22	Pfam	PF20536	NA	DUF6751
UHGV-1930318_22	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1930318_23	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1930318_23	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-1930318_23	eggNOG-mapper	411902.CLOBOL_00133	NA	NA
UHGV-1930318_24	Pfam	PF13912	C2H2-type zinc finger	zf-C2H2_6
UHGV-1930318_25	PHROG	phrog_422	major head protein	head and packaging
UHGV-1930318_25	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-1930318_25	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-1930318_25	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1930318_26	UniRef90	UniRef90_G4L0H8	Phage minor structural GP20 family protein	NA
UHGV-1930318_26	eggNOG-mapper	693746.OBV_18080	COG NOG36366 non supervised orthologous group	NA
UHGV-1930318_27	eggNOG-mapper	1514668.JOOA01000001_gene690	NA	NA
UHGV-1930318_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1930318_28	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-1930318_28	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-1930318_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1930318_28	COG	COG2369	NA	NA
UHGV-1930318_28	Structural annotation	PF06152, PF03496, MF_04139, NF041404	NA	NA
UHGV-1930318_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-1930318_29	UniRef90	UniRef90_UPI000680A1DB	phage portal protein	NA
UHGV-1930318_29	eggNOG-mapper	693746.OBV_18040	NA	NA
UHGV-1930318_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1930318_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1930318_31	PHROG	phrog_10250	NA	unknown function
UHGV-1930318_31	UniRef90	UniRef90_A0A6A8VHC1	PBSX family phage terminase large subunit	NA
UHGV-1930318_31	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-1930318_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1930318_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1930318_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-1930318_31	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1930318_32	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1930318_32	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1930318_32	UniRef90	UniRef90_UPI000C7A7EA3	terminase small subunit	NA
UHGV-1930318_32	eggNOG-mapper	1158607.UAU_05157	Terminase small subunit	NA
UHGV-1930318_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1930318_33	PHROG	phrog_20533	NA	unknown function
UHGV-1930318_33	UniRef90	UniRef90_A0A7C6U4T3	PLD phosphodiesterase domain-containing protein	NA
UHGV-1930318_33	eggNOG-mapper	1123058.KB894251_gene2369	NA	NA
UHGV-1930318_33	Structural annotation	PF17941, MF_01918, NF010490, COG3886	NA	NA
UHGV-1930318_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1930318_35	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-1930318_35	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-1930318_35	Structural annotation	PF04545	NA	NA
UHGV-1930318_36	PHROG	phrog_3777	NA	unknown function
UHGV-1930318_36	UniRef90	UniRef90_A0A417F5N7	NA	NA
UHGV-1930318_36	eggNOG-mapper	1235797.C816_03984	NA	NA
UHGV-1930318_36	Pfam	PF12957	NA	DUF3846
UHGV-1930318_36	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-1930318_36	Structural annotation	PF12957	NA	NA
UHGV-1930318_37	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1930318_37	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1930318_37	UniRef90	UniRef90_A0A2V2FWS9	DEAD/DEAH box helicase	NA
UHGV-1930318_37	eggNOG-mapper	1120971.AUCA01000043_gene1170	SNF2 family N-terminal domain	NA
UHGV-1930318_37	PADLOC	DpdE_00010	DpdE	DPD
UHGV-1930318_37	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1930318_37	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1930318_37	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-1930318_38	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1930318_38	UniRef90	UniRef90_A0A2V2FU35	VRR-NUC domain-containing protein	NA
UHGV-1930318_38	eggNOG-mapper	445335.CBN_2999	VRR-NUC domain-containing protein	NA
UHGV-1930318_38	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-1930318_40	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1930318_40	UniRef90	UniRef90_A0A2V2FYQ5	Virulence-associated protein E	NA
UHGV-1930318_40	eggNOG-mapper	1203606.HMPREF1526_00242	virulence-associated E family protein	NA
UHGV-1930318_40	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-1930318_40	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-1930318_40	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-1930318_41	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-1930318_41	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1930318_41	UniRef90	UniRef90_A0A7X5INW3	POLAc domain-containing protein	NA
UHGV-1930318_41	eggNOG-mapper	1203606.HMPREF1526_00239	DNA polymerase	NA
UHGV-1930318_41	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-1930318_41	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-1930318_41	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-1930318_42	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1930318_42	UniRef90	UniRef90_A0A2V2FV77	NA	NA
UHGV-1930318_42	eggNOG-mapper	1408437.JNJN01000081_gene1517	NA	NA
UHGV-1930318_42	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-1930318_42	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-1930318_44	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1930318_44	UniRef90	UniRef90_A0A2V2FS99	NA	NA
UHGV-1930318_44	eggNOG-mapper	1449126.JQKL01000006_gene838	NA	NA
UHGV-1930318_44	Pfam	PF10926	NA	DUF2800
UHGV-1930318_44	COG	COG2887	RecB family exonuclease	NA
UHGV-1930318_44	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1930318_46	PHROG	phrog_22695	NA	unknown function
UHGV-1930318_46	eggNOG-mapper	1120971.AUCA01000043_gene1180	NA	NA
UHGV-1930318_47	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1930318_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1930318_47	UniRef90	UniRef90_R6HY73	HTH cro/C1-type domain-containing protein	NA
UHGV-1930318_47	eggNOG-mapper	330397.A8ATJ9_9CAUD	protein disulfide oxidoreductase activity	NA
UHGV-1930318_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1930318_47	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-1930318_48	PHROG	phrog_3777	NA	unknown function
UHGV-1930318_48	UniRef90	UniRef90_A0A417F5N7	NA	NA
UHGV-1930318_48	eggNOG-mapper	767817.Desgi_3545	NA	NA
UHGV-1930318_48	Pfam	PF12957	NA	DUF3846
UHGV-1930318_48	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-1930318_48	Structural annotation	PF12957	NA	NA
UHGV-1930318_51	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1930318_51	PHROG	phrog_18750	NA	unknown function
UHGV-1930318_51	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-1930318_51	eggNOG-mapper	411483.FAEPRAA2165_01872	Cell wall hydrolase	NA
UHGV-1930318_51	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-1930318_51	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-1930318_51	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-1930318_53	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1930318_53	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1930318_53	UniRef90	UniRef90_A0A1C5P786	Phage anti-repressor protein	NA
UHGV-1930318_53	eggNOG-mapper	1414720.CBYM010000005_gene1349	Phage antirepressor protein KilAC domain	NA
UHGV-1930318_53	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1930318_53	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1930318_53	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1930318_53	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-1930318_59	UniRef90	UniRef90_R6DVV1	Conserved domain protein	NA
UHGV-1930318_59	eggNOG-mapper	246199.CUS_5910	NA	NA
UHGV-1930318_59	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1930318_59	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-1930318_60	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1930318_60	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1930318_60	UniRef90	UniRef90_A0A7X5E0L6	XRE family transcriptional regulator	NA
UHGV-1930318_60	eggNOG-mapper	1121423.JONT01000002_gene2372	Peptidase S24-like	NA
UHGV-1930318_60	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1930318_60	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1930318_60	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1930318_60	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1930318_61	PHROG	phrog_8887	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1930318_61	UniRef90	UniRef90_A0A2P8G8H5	HicA-like toxin of HicAB toxin-antitoxin system	NA
UHGV-1930318_61	eggNOG-mapper	746697.Aeqsu_0943	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-1930318_61	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-1930318_61	Structural annotation	COG1724	NA	NA
UHGV-1930318_62	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-1930318_62	UniRef90	UniRef90_UPI0009E36456	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-1930318_62	eggNOG-mapper	33035.JPJF01000090_gene99	HicB family	NA
UHGV-1930318_62	Pfam	PF05534	HicB family	HicB
UHGV-1930318_62	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-1930318_62	Structural annotation	PF21748, PF07878, NF041264, COG4226	NA	NA
UHGV-1930318_64	KOfam	K14059	int; integrase	NA
UHGV-1930318_64	PHROG	phrog_1	integrase	integration and excision
UHGV-1930318_64	UniRef90	UniRef90_A0A4Z0XW16	Tyrosine recombinase XerC	NA
UHGV-1930318_64	eggNOG-mapper	1216362.B437_07177	Belongs to the 'phage' integrase family	NA
UHGV-1930318_64	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1930318_64	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1930318_64	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA