UHGV-1932554

Genome information

vOTU vOTU-020256

Genome length 36,080 bps

CDS count 48

Completeness 81.89% (medium-quality)

geNomad score 0.9653

Prediction confidence Confident

Genome information
Genome ID	UHGV-1932554
vOTU ID	vOTU-020256
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300007362\|Ga0104788_100433\|provirus_73_36152
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9653
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.83
Jumbo phage	No

Genome content
Genome length	36,080 bps
GC content	44.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.18%
Average CDS length	696.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1932554_1	PHROG	phrog_15412	NA	unknown function
UHGV-1932554_1	UniRef90	UniRef90_A0A7G5DZF6	Heavy metal-binding domain-containing protein	NA
UHGV-1932554_1	eggNOG-mapper	36874.HQ34_05490	Putative heavy-metal-binding	NA
UHGV-1932554_1	Pfam	PF01906	Putative heavy-metal-binding	YbjQ_1
UHGV-1932554_1	COG	COG0393	NA	NA
UHGV-1932554_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1932554_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1932554_2	UniRef90	UniRef90_A0A413JCP2	Peptidase_S24 domain-containing protein	NA
UHGV-1932554_2	eggNOG-mapper	1227276.HMPREF9148_01940	Transcriptional regulator	NA
UHGV-1932554_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1932554_2	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1932554_2	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-1932554_5	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1932554_5	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1932554_5	UniRef90	UniRef90_C7M988	Phage antirepressor protein	NA
UHGV-1932554_5	eggNOG-mapper	521097.Coch_0879	Toxin-antitoxin system, toxin component, Bro domain protein	NA
UHGV-1932554_5	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1932554_5	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1932554_5	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1932554_5	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-1932554_6	UniRef90	UniRef90_UPI000F00AA74	helix-turn-helix domain-containing protein	NA
UHGV-1932554_6	eggNOG-mapper	1347393.HG726026_gene2599	NA	NA
UHGV-1932554_6	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1932554_8	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1932554_8	UniRef90	UniRef90_A0A1Y3X322	NA	NA
UHGV-1932554_8	eggNOG-mapper	326298.Suden_1630	NA	NA
UHGV-1932554_8	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1932554_8	Structural annotation	PF14297	NA	NA
UHGV-1932554_9	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1932554_9	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1932554_9	UniRef90	UniRef90_A0A413ITT5	Replicative DNA helicase	NA
UHGV-1932554_9	eggNOG-mapper	1077285.AGDG01000022_gene1141	Participates in initiation and elongation during chromosome replication	NA
UHGV-1932554_9	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1932554_9	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1932554_9	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-1932554_9	COG	COG0305	Replicative DNA helicase	NA
UHGV-1932554_9	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1932554_11	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1932554_11	UniRef90	UniRef90_A0A3D8HAV5	HNH endonuclease	NA
UHGV-1932554_11	eggNOG-mapper	202954.BBNK01000010_gene1393	HNH nucleases	NA
UHGV-1932554_11	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1932554_11	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1932554_12	Structural annotation	PF04703, MF_01819	NA	NA
UHGV-1932554_14	eggNOG-mapper	470145.BACCOP_01167	NA	NA
UHGV-1932554_15	PHROG	phrog_7445	NA	unknown function
UHGV-1932554_15	UniRef90	UniRef90_UPI001781AF93	PcfK-like family protein	NA
UHGV-1932554_15	eggNOG-mapper	1347393.HG726021_gene361	PcfK-like protein	NA
UHGV-1932554_15	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-1932554_15	Structural annotation	PF14058	NA	NA
UHGV-1932554_16	PHROG	phrog_8470	NA	unknown function
UHGV-1932554_16	UniRef90	UniRef90_A0A1M6FJV9	PcfJ-like protein	NA
UHGV-1932554_16	eggNOG-mapper	1236514.BAKL01000015_gene1645	NA	NA
UHGV-1932554_16	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1932554_16	Structural annotation	PF14284	NA	NA
UHGV-1932554_18	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1932554_18	PHROG	phrog_1	integrase	integration and excision
UHGV-1932554_18	UniRef90	UniRef90_UPI000D0AF22A	tyrosine-type recombinase/integrase	NA
UHGV-1932554_18	eggNOG-mapper	926692.AZYG01000026_gene1759	Belongs to the 'phage' integrase family	NA
UHGV-1932554_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1932554_18	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1932554_18	Structural annotation	PF00589, PF02899, MF_01807, NF001399, COG4974	NA	NA
UHGV-1932554_20	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1932554_20	UniRef90	UniRef90_A0A413IMM0	Phage terminase small subunit P27 family	NA
UHGV-1932554_20	eggNOG-mapper	1433126.BN938_0084	Phage terminase, small subunit	NA
UHGV-1932554_20	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1932554_20	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1932554_20	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1932554_20	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1932554_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1932554_21	UniRef90	UniRef90_UPI000D0B1E8B	terminase large subunit	NA
UHGV-1932554_21	eggNOG-mapper	2754.EH55_13175	Terminase	NA
UHGV-1932554_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1932554_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1932554_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1932554_21	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1932554_24	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1932554_24	UniRef90	UniRef90_UPI001CC01E76	Rha family transcriptional regulator	NA
UHGV-1932554_24	eggNOG-mapper	1268240.ATFI01000007_gene446	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-1932554_24	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1932554_24	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1932554_24	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-1932554_25	PHROG	phrog_3243	NA	unknown function
UHGV-1932554_25	eggNOG-mapper	1227266.HMPREF1551_02099	NA	NA
UHGV-1932554_25	Structural annotation	PF15072, MF_00075, TIGR00008, COG0361	NA	NA
UHGV-1932554_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-1932554_26	UniRef90	UniRef90_A0A413IG58	Phage portal protein	NA
UHGV-1932554_26	eggNOG-mapper	1414720.CBYM010000005_gene1370	Phage portal protein, HK97 family	NA
UHGV-1932554_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1932554_26	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1932554_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1932554_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1932554_27	KOfam	K06904	NA	NA
UHGV-1932554_27	PHROG	phrog_617	major head protein	head and packaging
UHGV-1932554_27	UniRef90	UniRef90_UPI000D0B9511	HK97 family phage prohead protease	NA
UHGV-1932554_27	eggNOG-mapper	553175.POREN0001_0011	Phage prohead protease, HK97 family	NA
UHGV-1932554_27	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1932554_27	COG	COG3740	Phage head maturation protease	NA
UHGV-1932554_28	PHROG	phrog_617	major head protein	head and packaging
UHGV-1932554_28	UniRef90	UniRef90_UPI000D0BD3A0	phage major capsid protein	NA
UHGV-1932554_28	eggNOG-mapper	547045.NEISICOT_01400	Phage capsid family	NA
UHGV-1932554_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1932554_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1932554_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1932554_29	UniRef90	UniRef90_A0A413IG96	Helix-hairpin-helix domain-containing protein	NA
UHGV-1932554_29	Structural annotation	PF01281, PF14520	NA	NA
UHGV-1932554_30	PHROG	phrog_442	head-tail adaptor	connector
UHGV-1932554_30	UniRef90	UniRef90_UPI000D0B385D	phage gp6-like head-tail connector protein	NA
UHGV-1932554_30	eggNOG-mapper	1231190.NA8A_19835	Phage gp6-like head-tail connector protein	NA
UHGV-1932554_30	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1932554_30	NCBIFam	TIGR02215.1	phage conserved hypothetical protein, phiE125 gp8 family	NA
UHGV-1932554_30	Structural annotation	PF05135, TIGR02215	NA	NA
UHGV-1932554_31	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1932554_35	PHROG	phrog_1407	major tail protein	tail
UHGV-1932554_35	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1932554_36	Structural annotation	PF19591	NA	NA
UHGV-1932554_38	PHROG	phrog_37298	NA	unknown function
UHGV-1932554_38	UniRef90	UniRef90_A0A413IG66	Phage tail length tape measure family protein	NA
UHGV-1932554_38	eggNOG-mapper	1121101.HMPREF1532_02608	domain protein	NA
UHGV-1932554_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1932554_38	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1932554_39	PHROG	phrog_38044	NA	unknown function
UHGV-1932554_39	UniRef90	UniRef90_UPI000D873A09	polymer-forming cytoskeletal protein	NA
UHGV-1932554_39	eggNOG-mapper	657309.BXY_05160	NA	NA
UHGV-1932554_40	PHROG	phrog_5911	tail protein	tail
UHGV-1932554_40	eggNOG-mapper	742727.HMPREF9447_00713	cellulase activity	NA
UHGV-1932554_40	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1932554_44	Structural annotation	PF11031, MF_04104, NF041673, COG2203	NA	NA
UHGV-1932554_45	PHROG	phrog_3108	NA	unknown function
UHGV-1932554_45	eggNOG-mapper	1123366.TH3_19867	lytic transglycosylase activity	NA
UHGV-1932554_45	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-1932554_46	eggNOG-mapper	1158294.JOMI01000001_gene1657	NA	NA
UHGV-1932554_47	KOfam	K06158	ABCF3; ATP-binding cassette, subfamily F, member 3	NA
UHGV-1932554_47	PHROG	phrog_293	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-1932554_47	UniRef90	UniRef90_A0A1Y3VV51	ABC transporter ATP-binding protein	NA
UHGV-1932554_47	eggNOG-mapper	1121129.KB903373_gene535	ATPases associated with a variety of cellular activities	NA
UHGV-1932554_47	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-1932554_47	Pfam	PF02463	RecF/RecN/SMC N terminal domain	SMC_N
UHGV-1932554_47	NCBIFam	TIGR01189.1	heme ABC exporter ATP-binding protein CcmA	NA
UHGV-1932554_47	COG	COG0488	ATPase components of ABC transporters with duplicated ATPase domains	NA
UHGV-1932554_47	Structural annotation	PF00005, PF11398, MF_00847, NF011646, COG0488	NA	NA
UHGV-1932554_48	KOfam	K20968	exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA	NA
UHGV-1932554_48	UniRef90	UniRef90_A0A4Y1X0S5	AraC family transcriptional regulator	NA
UHGV-1932554_48	eggNOG-mapper	742725.HMPREF9450_01552	Helix-turn-helix domain	NA
UHGV-1932554_48	Pfam	PF12833	Helix-turn-helix domain	HTH_18
UHGV-1932554_48	COG	COG2207	AraC-type DNA-binding domain and AraC-containing proteins	NA
UHGV-1932554_48	Structural annotation	PF02311, PF12833, MF_01534, NF010025, COG2207, COG1917	NA	NA