UHGV-1933742

Genome information

Genome length 14,885 bps

CDS count 25

Completeness 99.90% (high-quality)

geNomad score 0.9559

Prediction confidence Confident

Genome information
Genome ID	UHGV-1933742
vOTU ID	vOTU-014247
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300006464\|Ga0100221_1001083\|provirus_2_14886
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	3
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9559
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	9.03
Jumbo phage	No

Genome content
Genome length	14,885 bps
GC content	52.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	83.78%
Average CDS length	505.20 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1933742_1	eggNOG-mapper	1519439.JPJG01000107_gene1857	NA	NA
UHGV-1933742_2	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1933742_2	UniRef90	UniRef90_A0A1Y4LDZ1	Helix-turn-helix domain-containing protein	NA
UHGV-1933742_2	eggNOG-mapper	742735.HMPREF9467_03087	NA	NA
UHGV-1933742_2	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1933742_2	Pfam	PF19481	NA	DUF6017
UHGV-1933742_2	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1933742_2	Structural annotation	PF19481, TIGR04176, COG3355	NA	NA
UHGV-1933742_3	eggNOG-mapper	1121115.AXVN01000056_gene2485	NA	NA
UHGV-1933742_4	UniRef90	UniRef90_R8W4H9	NA	NA
UHGV-1933742_4	eggNOG-mapper	1203606.HMPREF1526_01070	NA	NA
UHGV-1933742_4	Pfam	PF18987	NA	DUF5720
UHGV-1933742_5	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1933742_5	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1933742_5	UniRef90	UniRef90_A0A1Y4LDA1	Chromosome partitioning protein ParB	NA
UHGV-1933742_5	eggNOG-mapper	742735.HMPREF9467_03084	Belongs to the ParB family	NA
UHGV-1933742_5	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1933742_5	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-1933742_5	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1933742_5	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-1933742_6	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1933742_6	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1933742_6	UniRef90	UniRef90_D3ACH3	CobQ/CobB/MinD/ParA nucleotide binding domain protein	NA
UHGV-1933742_6	eggNOG-mapper	658086.HMPREF0994_06326	AAA domain	NA
UHGV-1933742_6	Pfam	PF13614	AAA domain	AAA_31
UHGV-1933742_6	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1933742_6	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-1933742_10	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1933742_10	eggNOG-mapper	1519439.JPJG01000044_gene958	NA	NA
UHGV-1933742_11	PHROG	phrog_13890	NA	unknown function
UHGV-1933742_11	UniRef90	UniRef90_G9YP46	Arc-like DNA-binding protein	NA
UHGV-1933742_11	eggNOG-mapper	1519439.JPJG01000054_gene2127	NA	NA
UHGV-1933742_12	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1933742_12	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-1933742_12	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-1933742_12	COG	COG1511	NA	NA
UHGV-1933742_12	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-1933742_13	PHROG	phrog_706	NA	unknown function
UHGV-1933742_13	UniRef90	UniRef90_UPI001D069FB9	Gp15 family bacteriophage protein	NA
UHGV-1933742_13	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-1933742_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1933742_13	Structural annotation	PF06854	NA	NA
UHGV-1933742_14	PHROG	phrog_11299	NA	unknown function
UHGV-1933742_14	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-1933742_14	Structural annotation	PF10666	NA	NA
UHGV-1933742_18	UniRef90	UniRef90_A0A412AWV1	Helix-turn-helix domain-containing protein	NA
UHGV-1933742_18	eggNOG-mapper	439235.Dalk_2800	NA	NA
UHGV-1933742_18	Structural annotation	PF13022	NA	NA
UHGV-1933742_19	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1933742_19	eggNOG-mapper	742738.HMPREF9460_00725	NA	NA
UHGV-1933742_19	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-1933742_20	eggNOG-mapper	97138.C820_00806	Bacteriophage replication protein O	NA
UHGV-1933742_21	Pfam	PF19808	NA	DUF6291
UHGV-1933742_21	Structural annotation	PF19808	NA	NA
UHGV-1933742_22	PHROG	phrog_2113	NA	unknown function
UHGV-1933742_23	UniRef90	UniRef90_UPI0005603E40	helix-turn-helix domain-containing protein	NA
UHGV-1933742_23	eggNOG-mapper	877411.JMMA01000002_gene1734	NA	NA
UHGV-1933742_23	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1933742_23	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1933742_23	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1933742_24	UniRef90	UniRef90_A0A6L9HN37	XRE family transcriptional regulator	NA
UHGV-1933742_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1933742_25	KOfam	K14059	int; integrase	NA
UHGV-1933742_25	PHROG	phrog_1	integrase	integration and excision
UHGV-1933742_25	UniRef90	UniRef90_UPI001C02FB7B	site-specific integrase	NA
UHGV-1933742_25	eggNOG-mapper	877411.JMMA01000002_gene2540	Belongs to the 'phage' integrase family	NA
UHGV-1933742_25	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1933742_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1933742_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1933742_25	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA