UHGV-1934781

Genome information

Genome length 31,364 bps

CDS count 47

Completeness 99.32% (high-quality)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-1934781
vOTU ID	vOTU-062751
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300007361\|Ga0104787_100311\|provirus_20403_51766
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.32% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.59
Jumbo phage	No

Genome content
Genome length	31,364 bps
GC content	56.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	91.16%
Average CDS length	612.51 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1934781_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1934781_1	PHROG	phrog_95	integrase	integration and excision
UHGV-1934781_1	UniRef90	UniRef90_UPI001C11D960	recombinase family protein	NA
UHGV-1934781_1	eggNOG-mapper	411470.RUMGNA_02175	Resolvase, N terminal domain	NA
UHGV-1934781_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1934781_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1934781_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1934781_1	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-1934781_2	UniRef90	UniRef90_A0A173UW50	NA	NA
UHGV-1934781_2	eggNOG-mapper	657322.FPR_11180	NA	NA
UHGV-1934781_2	Pfam	PF13711	NA	DUF4160
UHGV-1934781_3	eggNOG-mapper	657322.FPR_11170	NA	NA
UHGV-1934781_4	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-1934781_4	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-1934781_4	UniRef90	UniRef90_A0A6N9PU81	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-1934781_4	eggNOG-mapper	397287.C807_03671	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-1934781_4	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-1934781_4	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1934781_5	PHROG	phrog_806	NA	unknown function
UHGV-1934781_5	UniRef90	UniRef90_A0A6A8VHR6	NA	NA
UHGV-1934781_5	eggNOG-mapper	1280686.AUKE01000001_gene2110	NA	NA
UHGV-1934781_5	Pfam	PF16729	NA	DUF5067
UHGV-1934781_5	Pfam	PF11611	NA	DUF4352
UHGV-1934781_6	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1934781_6	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1934781_6	UniRef90	UniRef90_A0A1Q6JHR3	HTH cro/C1-type domain-containing protein	NA
UHGV-1934781_6	eggNOG-mapper	561177.ANHYDRO_01377	Peptidase S24-like	NA
UHGV-1934781_6	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1934781_6	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1934781_6	NCBIFam	TIGR00498.1	transcriptional repressor LexA	NA
UHGV-1934781_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1934781_6	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1934781_7	UniRef90	UniRef90_UPI001D09355C	helix-turn-helix domain-containing protein	NA
UHGV-1934781_7	eggNOG-mapper	1033737.CAEV01000029_gene313	Helix-turn-helix	NA
UHGV-1934781_7	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-1934781_8	PHROG	phrog_585	NA	unknown function
UHGV-1934781_8	UniRef90	UniRef90_UPI0008A69A23	NA	NA
UHGV-1934781_8	eggNOG-mapper	1235798.C817_04760	NA	NA
UHGV-1934781_8	Pfam	PF10711	NA	DUF2513
UHGV-1934781_10	Structural annotation	PF11195	NA	NA
UHGV-1934781_14	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-1934781_14	UniRef90	UniRef90_A0A316MAS4	Helix-turn-helix domain-containing protein	NA
UHGV-1934781_14	eggNOG-mapper	458233.MCCL_1540	Helix-turn-helix domain	NA
UHGV-1934781_14	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1934781_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1934781_14	Structural annotation	PF02002, MF_01909, NF040939, COG5529	NA	NA
UHGV-1934781_15	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1934781_15	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1934781_15	UniRef90	UniRef90_R5ENX5	DNA helicase	NA
UHGV-1934781_15	eggNOG-mapper	693746.OBV_27440	DnaB-like helicase N terminal domain	NA
UHGV-1934781_15	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1934781_15	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1934781_15	COG	COG0305	Replicative DNA helicase	NA
UHGV-1934781_15	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1934781_16	eggNOG-mapper	1408324.JNJK01000014_gene1982	NA	NA
UHGV-1934781_17	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1934781_17	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1934781_17	UniRef90	UniRef90_R5EEH2	CobQ/CobB/MinD/ParA nucleotide binding domain protein	NA
UHGV-1934781_17	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-1934781_17	Pfam	PF13614	AAA domain	AAA_31
UHGV-1934781_17	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1934781_17	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1934781_18	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1934781_18	PHROG	phrog_27290	NA	unknown function
UHGV-1934781_18	UniRef90	UniRef90_R5EBB0	ParB domain-containing protein	NA
UHGV-1934781_18	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-1934781_18	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1934781_18	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1934781_18	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-1934781_21	PHROG	phrog_3136	NA	unknown function
UHGV-1934781_21	UniRef90	UniRef90_UPI001A9A8D4F	ASCH domain-containing protein	NA
UHGV-1934781_21	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1934781_21	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-1934781_23	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1934781_23	eggNOG-mapper	632245.CLP_2642	NA	NA
UHGV-1934781_23	Structural annotation	PF01446, NF041486	NA	NA
UHGV-1934781_24	PHROG	phrog_6417	translational regulator	other
UHGV-1934781_24	UniRef90	UniRef90_UPI001F309B22	cysteine-rich KTR domain-containing protein	NA
UHGV-1934781_24	Structural annotation	PF14205, COG4416	NA	NA
UHGV-1934781_25	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1934781_25	UniRef90	UniRef90_A0A316P1K8	HNH endonuclease	NA
UHGV-1934781_25	eggNOG-mapper	755731.Clo1100_0542	HNH nucleases	NA
UHGV-1934781_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1934781_25	Structural annotation	TIGR02646	NA	NA
UHGV-1934781_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1934781_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1934781_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1934781_27	UniRef90	UniRef90_R5EM34	Phage terminase large subunit	NA
UHGV-1934781_27	eggNOG-mapper	491915.Aflv_0661	Phage Terminase	NA
UHGV-1934781_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1934781_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1934781_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1934781_27	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-1934781_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-1934781_28	UniRef90	UniRef90_R5ENV9	Phage portal protein	NA
UHGV-1934781_28	eggNOG-mapper	396034.A6XMJ5_9CAUD	Phage portal protein	NA
UHGV-1934781_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1934781_28	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1934781_28	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1934781_29	KOfam	K06904	NA	NA
UHGV-1934781_29	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1934781_29	UniRef90	UniRef90_R5EAP6	Phage prohead protease HK97 family	NA
UHGV-1934781_29	eggNOG-mapper	1121428.DESHY_20136___1	Phage prohead protease, HK97 family	NA
UHGV-1934781_29	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1934781_29	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1934781_29	COG	COG3740	Phage head maturation protease	NA
UHGV-1934781_29	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1934781_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-1934781_30	UniRef90	UniRef90_A0A1C5W5F9	Phage major capsid protein, HK97 family	NA
UHGV-1934781_30	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-1934781_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1934781_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1934781_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1934781_31	PHROG	phrog_88	major tail protein	tail
UHGV-1934781_31	UniRef90	UniRef90_R5EB96	Phage major tail protein phi13 family	NA
UHGV-1934781_31	eggNOG-mapper	349161.Dred_2600	NA	NA
UHGV-1934781_31	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1934781_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1934781_34	Structural annotation	PF11367, MF_00632	NA	NA
UHGV-1934781_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1934781_35	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-1934781_37	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-1934781_37	eggNOG-mapper	397290.C810_00429	Phage-related minor tail protein	NA
UHGV-1934781_37	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1934781_37	Structural annotation	PF20155	NA	NA
UHGV-1934781_38	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1934781_39	Structural annotation	PF14594, TIGR01646, COG4926	NA	NA
UHGV-1934781_43	eggNOG-mapper	994573.T472_0212005	NA	NA
UHGV-1934781_44	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-1934781_44	PHROG	phrog_894	endolysin	lysis
UHGV-1934781_44	UniRef90	UniRef90_R5EEQ7	Putative muramoyl-pentapeptide carboxypeptidase	NA
UHGV-1934781_44	eggNOG-mapper	931626.Awo_c26840	Peptidase M15	NA
UHGV-1934781_44	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1934781_44	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-1934781_44	COG	COG3108	NA	NA
UHGV-1934781_44	Structural annotation	PF08291, PF01471, TIGR02869, COG3108	NA	NA
UHGV-1934781_45	PHROG	phrog_937	hemolysin	other
UHGV-1934781_45	eggNOG-mapper	1007096.BAGW01000017_gene814	NA	NA
UHGV-1934781_46	PHROG	phrog_774	NA	unknown function
UHGV-1934781_46	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-1934781_47	PHROG	phrog_608	holin	lysis
UHGV-1934781_47	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1934781_47	Structural annotation	PF09682, TIGR01673	NA	NA