UHGV-1936671

Genome information

Genome length 34,770 bps

CDS count 43

Completeness 84.99% (medium-quality)

geNomad score 0.9740

Prediction confidence Confident

Genome information
Genome ID	UHGV-1936671
vOTU ID	vOTU-015805
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300008077\|Ga0105964_1000311\|provirus_31641_66410
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.99% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9740
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.16
Jumbo phage	No

Genome content
Genome length	34,770 bps
GC content	38.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	90.75%
Average CDS length	735.63 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1936671_2	KOfam	K14059	int; integrase	NA
UHGV-1936671_2	PHROG	phrog_1	integrase	integration and excision
UHGV-1936671_2	UniRef90	UniRef90_A0A416D611	Site-specific integrase	NA
UHGV-1936671_2	eggNOG-mapper	469616.FMAG_00575	Belongs to the 'phage' integrase family	NA
UHGV-1936671_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1936671_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1936671_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1936671_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1936671_4	PHROG	phrog_87	metallo-protease	other
UHGV-1936671_4	UniRef90	UniRef90_A0A316PHZ5	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1936671_4	eggNOG-mapper	428125.CLOLEP_02739	NA	NA
UHGV-1936671_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1936671_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1936671_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1936671_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1936671_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1936671_5	UniRef90	UniRef90_A0A316PBK9	HTH cro/C1-type domain-containing protein	NA
UHGV-1936671_5	eggNOG-mapper	663278.Ethha_2393	SMART helix-turn-helix domain protein	NA
UHGV-1936671_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1936671_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1936671_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1936671_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1936671_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1936671_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1936671_6	UniRef90	UniRef90_A0A316PCA6	XRE family transcriptional regulator	NA
UHGV-1936671_6	eggNOG-mapper	1123312.KB904584_gene731	Transcriptional	NA
UHGV-1936671_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1936671_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1936671_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1936671_7	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1936671_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1936671_7	UniRef90	UniRef90_A0A316PSL7	XRE family transcriptional regulator	NA
UHGV-1936671_7	eggNOG-mapper	1009370.ALO_18842	sequence-specific DNA binding	NA
UHGV-1936671_7	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1936671_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1936671_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1936671_8	UniRef90	UniRef90_A0A316PEB9	HTH cro/C1-type domain-containing protein	NA
UHGV-1936671_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1936671_8	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-1936671_8	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1936671_12	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1936671_12	UniRef90	UniRef90_UPI00101BBD21	phosphoadenosine phosphosulfate reductase	NA
UHGV-1936671_12	eggNOG-mapper	1469948.JPNB01000003_gene43	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-1936671_12	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1936671_12	Structural annotation	PF01507, MF_00063, NF002537	NA	NA
UHGV-1936671_14	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1936671_14	UniRef90	UniRef90_A7B3R2	Siphovirus Gp157	NA
UHGV-1936671_14	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-1936671_14	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1936671_14	Structural annotation	PF05565	NA	NA
UHGV-1936671_15	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1936671_15	UniRef90	UniRef90_UPI00195E1D01	AAA family ATPase	NA
UHGV-1936671_15	eggNOG-mapper	1235792.C808_05390	AAA domain	NA
UHGV-1936671_15	Pfam	PF13479	AAA domain	AAA_24
UHGV-1936671_15	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-1936671_16	PHROG	phrog_2698	NA	unknown function
UHGV-1936671_16	UniRef90	UniRef90_A0A3D5UGJ1	NA	NA
UHGV-1936671_16	eggNOG-mapper	1123511.KB905868_gene200	NA	NA
UHGV-1936671_16	Structural annotation	PF05037	NA	NA
UHGV-1936671_17	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-1936671_17	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1936671_17	UniRef90	UniRef90_A0A2K9P635	DEAD/DEAH box helicase	NA
UHGV-1936671_17	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-1936671_17	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-1936671_17	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1936671_17	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1936671_17	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1936671_17	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-1936671_18	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-1936671_18	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1936671_18	UniRef90	UniRef90_A0A316PCV6	DNA primase	NA
UHGV-1936671_18	eggNOG-mapper	1232449.BAHV02000008_gene621	Primase C terminal 2 (PriCT-2)	NA
UHGV-1936671_18	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-1936671_18	Pfam	PF13481	AAA domain	AAA_25
UHGV-1936671_18	COG	COG3598	RecA-family ATPase	NA
UHGV-1936671_18	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-1936671_19	PHROG	phrog_16687	NA	unknown function
UHGV-1936671_19	eggNOG-mapper	1123511.KB905868_gene197	NA	NA
UHGV-1936671_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1936671_20	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1936671_20	UniRef90	UniRef90_A0A316PB58	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1936671_20	eggNOG-mapper	1235792.C808_05386	Endodeoxyribonuclease RusA	NA
UHGV-1936671_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1936671_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1936671_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1936671_22	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-1936671_22	UniRef90	UniRef90_A0A2K9P078	NA	NA
UHGV-1936671_22	eggNOG-mapper	881915.E1Y3U1_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-1936671_22	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-1936671_22	Structural annotation	PF18909	NA	NA
UHGV-1936671_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1936671_23	UniRef90	UniRef90_A0A2K9P072	RNA polymerase subunit sigma-24	NA
UHGV-1936671_23	eggNOG-mapper	1347392.CCEZ01000005_gene1225	NA	NA
UHGV-1936671_23	Structural annotation	PF02996	NA	NA
UHGV-1936671_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1936671_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1936671_24	UniRef90	UniRef90_A0A316P9E5	Terminase small subunit	NA
UHGV-1936671_24	eggNOG-mapper	608534.GCWU000341_02298	Terminase small subunit	NA
UHGV-1936671_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1936671_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1936671_24	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1936671_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1936671_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1936671_25	UniRef90	UniRef90_A0A2K9NYT9	Terminase large subunit	NA
UHGV-1936671_25	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-1936671_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1936671_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1936671_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1936671_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-1936671_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1936671_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-1936671_26	UniRef90	UniRef90_A0A316PF49	Phage portal protein	NA
UHGV-1936671_26	eggNOG-mapper	562981.HMPREF0428_01823	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1936671_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1936671_26	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1936671_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1936671_27	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1936671_27	UniRef90	UniRef90_A0A316P952	Phage head morphogenesis protein	NA
UHGV-1936671_27	eggNOG-mapper	1280689.AUJC01000003_gene964	Phage Mu protein F like protein	NA
UHGV-1936671_27	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1936671_27	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1936671_27	COG	COG2369	NA	NA
UHGV-1936671_27	Structural annotation	PF21814, PF04233, TIGR01641, COG2369	NA	NA
UHGV-1936671_29	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1936671_29	UniRef90	UniRef90_A0A316PB67	NA	NA
UHGV-1936671_29	eggNOG-mapper	1235800.C819_00486	NA	NA
UHGV-1936671_29	Pfam	PF14265	NA	DUF4355
UHGV-1936671_29	Structural annotation	PF14265	NA	NA
UHGV-1936671_30	PHROG	phrog_544	major head protein	head and packaging
UHGV-1936671_30	UniRef90	UniRef90_A0A316P9D7	N4-gp56 family major capsid protein	NA
UHGV-1936671_30	eggNOG-mapper	1484479.DI14_04775	NA	NA
UHGV-1936671_30	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1936671_30	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1936671_31	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1936671_31	UniRef90	UniRef90_A0A6N2R673	Phage gp6-like head-tail connector protein	NA
UHGV-1936671_31	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-1936671_31	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1936671_31	Structural annotation	PF05135	NA	NA
UHGV-1936671_32	eggNOG-mapper	1345695.CLSA_c29900	NA	NA
UHGV-1936671_33	PHROG	phrog_78	tail terminator	connector
UHGV-1936671_33	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-1936671_34	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1936671_34	UniRef90	UniRef90_A0A2K9NYU7	Phage capsid and scaffold	NA
UHGV-1936671_34	eggNOG-mapper	673839.D2J065_9CAUD	exonuclease activity	NA
UHGV-1936671_34	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1936671_34	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1936671_34	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1936671_35	PHROG	phrog_88	major tail protein	tail
UHGV-1936671_35	UniRef90	UniRef90_A0A1C6E366	Phage major tail protein, phi13 family	NA
UHGV-1936671_35	eggNOG-mapper	927704.SELR_18160	Phage major tail protein, phi13 family	NA
UHGV-1936671_35	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1936671_35	COG	COG5492	NA	NA
UHGV-1936671_35	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1936671_37	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-1936671_37	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-1936671_37	UniRef90	UniRef90_A0A316PD60	Phage tail tape measure protein	NA
UHGV-1936671_37	eggNOG-mapper	1476973.JMMB01000007_gene1771	Phage-related minor tail protein	NA
UHGV-1936671_37	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1936671_37	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1936671_37	COG	COG5283	Phage-related tail protein	NA
UHGV-1936671_37	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1936671_38	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1936671_38	UniRef90	UniRef90_A0A2K9P0W7	Phage tail protein	NA
UHGV-1936671_38	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1936671_38	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1936671_38	COG	COG4722	Phage-related protein YomH	NA
UHGV-1936671_38	Structural annotation	PF05709, PF21766, TIGR01633, COG4722	NA	NA
UHGV-1936671_39	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1936671_39	UniRef90	UniRef90_A0A2K9P036	Phage minor structural protein	NA
UHGV-1936671_39	eggNOG-mapper	649747.HMPREF0083_00991	Prophage endopeptidase tail	NA
UHGV-1936671_39	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-1936671_39	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1936671_39	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1936671_39	COG	COG4926	Phage-related protein	NA
UHGV-1936671_39	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-1936671_40	UniRef90	UniRef90_A0A316P9E8	Cu_amine_oxidN1 domain-containing protein	NA
UHGV-1936671_40	eggNOG-mapper	1408422.JHYF01000017_gene1892	NA	NA
UHGV-1936671_40	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-1936671_41	PHROG	phrog_5319	outer membrane protein	other
UHGV-1936671_41	UniRef90	UniRef90_A0A316PBV7	DZANK-type domain-containing protein	NA
UHGV-1936671_41	eggNOG-mapper	445973.CLOBAR_01976	NA	NA
UHGV-1936671_41	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-1936671_42	UniRef90	UniRef90_A0A316PPW4	CopG family transcriptional regulator	NA
UHGV-1936671_42	eggNOG-mapper	478749.BRYFOR_07643	NA	NA
UHGV-1936671_42	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-1936671_43	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-1936671_43	UniRef90	UniRef90_A0A316P9G4	ORF6N domain-containing protein	NA
UHGV-1936671_43	eggNOG-mapper	525255.HMPREF0077_0386	ORF6N domain	NA
UHGV-1936671_43	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-1936671_43	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24