UHGV-1936907

Genome information

Genome length 40,118 bps

CDS count 62

Completeness 94.07% (high-quality)

geNomad score 0.9739

Prediction confidence Confident

Genome information
Genome ID	UHGV-1936907
vOTU ID	vOTU-064776
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300006464\|Ga0100221_1000066\|provirus_72435_112552
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.07% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9739
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	67.7
Jumbo phage	No

Genome content
Genome length	40,118 bps
GC content	39.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	91.52%
Average CDS length	596.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1936907_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1936907_1	PHROG	phrog_95	integrase	integration and excision
UHGV-1936907_1	UniRef90	UniRef90_A0A350S6L5	Recombinase family protein	NA
UHGV-1936907_1	eggNOG-mapper	411460.RUMTOR_02053	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-1936907_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1936907_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-1936907_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1936907_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1936907_1	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-1936907_3	PHROG	phrog_87	metallo-protease	other
UHGV-1936907_3	UniRef90	UniRef90_UPI000E4A4CF7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1936907_3	eggNOG-mapper	742723.HMPREF9477_00938	Zn peptidase	NA
UHGV-1936907_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1936907_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1936907_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1936907_4	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-1936907_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1936907_4	UniRef90	UniRef90_R5ZAU1	Conserved domain protein	NA
UHGV-1936907_4	eggNOG-mapper	556261.HMPREF0240_01268	Helix-turn-helix	NA
UHGV-1936907_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1936907_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1936907_4	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-1936907_5	UniRef90	UniRef90_UPI000E52936A	helix-turn-helix domain-containing protein	NA
UHGV-1936907_5	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-1936907_5	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-1936907_5	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-1936907_11	PHROG	phrog_14970	NA	unknown function
UHGV-1936907_11	eggNOG-mapper	1410632.JHWW01000001_gene1266	double-strand break repair protein	NA
UHGV-1936907_11	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-1936907_11	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1936907_11	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1936907_12	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1936907_12	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-1936907_12	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1936907_13	PHROG	phrog_7566	NA	unknown function
UHGV-1936907_13	UniRef90	UniRef90_UPI000E542A38	phosphoenolpyruvate carboxykinase	NA
UHGV-1936907_13	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-1936907_14	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1936907_14	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1936907_14	UniRef90	UniRef90_UPI0018F5FF03	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1936907_14	eggNOG-mapper	525919.Apre_0813	Endodeoxyribonuclease RusA	NA
UHGV-1936907_14	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1936907_14	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1936907_14	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1936907_15	Structural annotation	PF21715, TIGR00122, COG1654	NA	NA
UHGV-1936907_16	PHROG	phrog_15768	NA	unknown function
UHGV-1936907_16	UniRef90	UniRef90_UPI000E525AC6	NA	NA
UHGV-1936907_16	eggNOG-mapper	33035.JPJF01000071_gene4467	NA	NA
UHGV-1936907_16	AcrCatalog	cluster_38323	NA	NA
UHGV-1936907_16	Pfam	PF19808	NA	DUF6291
UHGV-1936907_16	Structural annotation	PF19808	NA	NA
UHGV-1936907_18	PHROG	phrog_20593	NA	unknown function
UHGV-1936907_19	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1936907_19	UniRef90	UniRef90_A0A352SFW0	HNH endonuclease	NA
UHGV-1936907_19	eggNOG-mapper	1235799.C818_02668	endonuclease activity	NA
UHGV-1936907_19	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1936907_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1936907_19	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-1936907_20	PHROG	phrog_874	NA	unknown function
UHGV-1936907_20	UniRef90	UniRef90_UPI0018F57B3A	ASCH domain-containing protein	NA
UHGV-1936907_20	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-1936907_20	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1936907_22	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1936907_22	UniRef90	UniRef90_A0A6L6XK67	Phosphoadenosine phosphosulfate reductase	NA
UHGV-1936907_22	eggNOG-mapper	1410650.JHWL01000037_gene617	sulfate reduction	NA
UHGV-1936907_22	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1936907_22	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-1936907_23	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1936907_23	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1936907_23	UniRef90	UniRef90_A0A173S745	Putative methyltransferase	NA
UHGV-1936907_23	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-1936907_23	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1936907_23	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1936907_23	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1936907_23	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-1936907_24	PHROG	phrog_17690	NA	unknown function
UHGV-1936907_24	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-1936907_24	eggNOG-mapper	33035.JPJF01000107_gene432	NA	NA
UHGV-1936907_26	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-1936907_26	eggNOG-mapper	1235793.C809_02210	NA	NA
UHGV-1936907_27	PHROG	phrog_8684	NA	unknown function
UHGV-1936907_27	UniRef90	UniRef90_UPI000E4794A6	YopX family protein	NA
UHGV-1936907_27	eggNOG-mapper	742735.HMPREF9467_00920	YopX protein	NA
UHGV-1936907_27	Pfam	PF09643	YopX protein	YopX
UHGV-1936907_28	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1936907_28	UniRef90	UniRef90_UPI000E4AB9DB	Lar family restriction alleviation protein	NA
UHGV-1936907_28	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-1936907_28	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1936907_28	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1936907_28	Structural annotation	PF14354	NA	NA
UHGV-1936907_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1936907_30	UniRef90	UniRef90_A0A3A9EXN8	RNA polymerase subunit sigma-70	NA
UHGV-1936907_30	eggNOG-mapper	397288.C806_00079	NA	NA
UHGV-1936907_30	Structural annotation	PF07374	NA	NA
UHGV-1936907_31	PHROG	phrog_8680	NA	unknown function
UHGV-1936907_31	UniRef90	UniRef90_A0A3R6K733	NA	NA
UHGV-1936907_31	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-1936907_31	Pfam	PF14386	NA	DUF4417
UHGV-1936907_31	Structural annotation	PF14386	NA	NA
UHGV-1936907_33	PHROG	phrog_9479	NA	unknown function
UHGV-1936907_33	eggNOG-mapper	633697.EubceDRAFT1_2041	NA	NA
UHGV-1936907_33	Structural annotation	PF15529	NA	NA
UHGV-1936907_35	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1936907_35	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-1936907_35	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-1936907_35	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1936907_35	Structural annotation	PF16677	NA	NA
UHGV-1936907_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1936907_36	PHROG	phrog_10250	NA	unknown function
UHGV-1936907_36	UniRef90	UniRef90_A0A0F0C3Z2	Terminase-like family protein	NA
UHGV-1936907_36	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-1936907_36	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1936907_36	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1936907_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-1936907_36	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1936907_37	PHROG	phrog_64	portal protein	head and packaging
UHGV-1936907_37	UniRef90	UniRef90_N9YY32	SPP1 family phage portal protein	NA
UHGV-1936907_37	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-1936907_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1936907_37	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1936907_37	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1936907_38	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1936907_38	UniRef90	UniRef90_A0A1C5VLG6	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-1936907_38	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-1936907_38	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1936907_38	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1936907_38	COG	COG2369	NA	NA
UHGV-1936907_38	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1936907_41	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1936907_41	UniRef90	UniRef90_A0A844J9U3	NA	NA
UHGV-1936907_41	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-1936907_41	Pfam	PF14265	NA	DUF4355
UHGV-1936907_41	Structural annotation	PF14265	NA	NA
UHGV-1936907_42	PHROG	phrog_422	major head protein	head and packaging
UHGV-1936907_42	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-1936907_42	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-1936907_42	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1936907_43	PHROG	phrog_2724	NA	unknown function
UHGV-1936907_43	UniRef90	UniRef90_G5FH82	Rho_N domain-containing protein	NA
UHGV-1936907_43	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-1936907_43	Structural annotation	PF07498	NA	NA
UHGV-1936907_44	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1936907_44	UniRef90	UniRef90_A0A173WLV7	Phage gp6-like head-tail connector protein	NA
UHGV-1936907_44	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-1936907_44	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1936907_44	Structural annotation	PF05135	NA	NA
UHGV-1936907_45	PHROG	phrog_2168	NA	unknown function
UHGV-1936907_45	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-1936907_45	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1936907_46	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1936907_46	UniRef90	UniRef90_UPI0008314C69	HK97 gp10 family phage protein	NA
UHGV-1936907_46	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1936907_46	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1936907_46	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1936907_46	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1936907_47	PHROG	phrog_78	tail terminator	connector
UHGV-1936907_47	eggNOG-mapper	1499683.CCFF01000014_gene3904	NA	NA
UHGV-1936907_47	Structural annotation	PF05657	NA	NA
UHGV-1936907_48	PHROG	phrog_158	major tail protein	tail
UHGV-1936907_48	UniRef90	UniRef90_UPI001EE81C1F	phage tail protein	NA
UHGV-1936907_48	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-1936907_48	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-1936907_48	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1936907_49	PHROG	phrog_183	tail chaperone protein	tail
UHGV-1936907_49	UniRef90	UniRef90_UPI001D069341	NA	NA
UHGV-1936907_49	eggNOG-mapper	445974.CLORAM_02923	NA	NA
UHGV-1936907_49	Pfam	PF19591	NA	DUF6096
UHGV-1936907_49	Structural annotation	PF19591	NA	NA
UHGV-1936907_51	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1936907_51	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-1936907_51	COG	COG5412	Phage-related protein	NA
UHGV-1936907_54	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1936907_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1936907_54	UniRef90	UniRef90_A0A413YTG4	XRE family transcriptional regulator	NA
UHGV-1936907_54	eggNOG-mapper	857293.CAAU_0976	Helix-turn-helix XRE-family like proteins	NA
UHGV-1936907_54	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1936907_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1936907_54	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1936907_55	Structural annotation	PF07878, NF010256, COG4691	NA	NA
UHGV-1936907_56	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1936907_56	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1936907_56	UniRef90	UniRef90_A0A4R3JPG1	Phage anti-repressor protein	NA
UHGV-1936907_56	eggNOG-mapper	1304866.K413DRAFT_1188	AntA/AntB antirepressor	NA
UHGV-1936907_56	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1936907_56	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1936907_56	COG	COG3617	Prophage antirepressor	NA
UHGV-1936907_56	Structural annotation	PF10552, PF08346, NF008573, COG3561	NA	NA
UHGV-1936907_58	PHROG	phrog_1194	NA	unknown function
UHGV-1936907_58	UniRef90	UniRef90_R5Z572	Putative phage protein	NA
UHGV-1936907_58	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-1936907_58	Pfam	PF20458	NA	DUF6711
UHGV-1936907_58	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1936907_59	PHROG	phrog_1401	NA	unknown function
UHGV-1936907_59	UniRef90	UniRef90_UPI001A9A8A65	NA	NA
UHGV-1936907_59	eggNOG-mapper	1294142.CINTURNW_1041	NA	NA
UHGV-1936907_59	Structural annotation	PF07761	NA	NA
UHGV-1936907_60	PHROG	phrog_6616	tail protein	tail
UHGV-1936907_60	UniRef90	UniRef90_UPI001D0763AB	tail fiber domain-containing protein	NA
UHGV-1936907_60	eggNOG-mapper	1232453.BAIF02000058_gene1641	Phage minor structural protein	NA
UHGV-1936907_60	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1936907_60	COG	COG4926	Phage-related protein	NA
UHGV-1936907_60	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1936907_61	PHROG	phrog_199	holin	lysis
UHGV-1936907_61	UniRef90	UniRef90_A0A3R6Q4W7	Holin	NA
UHGV-1936907_61	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-1936907_61	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1936907_61	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1936907_61	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1936907_61	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1936907_62	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1936907_62	PHROG	phrog_435	endolysin	lysis
UHGV-1936907_62	UniRef90	UniRef90_A0A416Z2X7	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1936907_62	eggNOG-mapper	1469948.JPNB01000001_gene537	hmm pf01520	NA
UHGV-1936907_62	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1936907_62	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1936907_62	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA