UHGV-1937204

Genome information

Genome length 49,702 bps

CDS count 70

Completeness 79.52% (medium-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-1937204
vOTU ID	vOTU-041065
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300007705\|Ga0105636_100217\|provirus_12964_62665
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.08
Jumbo phage	No

Genome content
Genome length	49,702 bps
GC content	39.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	90.83%
Average CDS length	649.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1937204_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1937204_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1937204_1	UniRef90	UniRef90_B0NM83	Site-specific recombinase, phage integrase family	NA
UHGV-1937204_1	eggNOG-mapper	449673.BACSTE_00585	Phage integrase SAM-like domain	NA
UHGV-1937204_1	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-1937204_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1937204_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1937204_1	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1937204_2	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1937204_2	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1937204_2	UniRef90	UniRef90_B0NM82	Terminase small subunit	NA
UHGV-1937204_2	eggNOG-mapper	449673.BACSTE_00584	Terminase small subunit	NA
UHGV-1937204_2	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1937204_2	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1937204_2	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1937204_3	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1937204_3	UniRef90	UniRef90_UPI0011064D5D	phage terminase large subunit	NA
UHGV-1937204_3	eggNOG-mapper	449673.BACSTE_00583	domain protein	NA
UHGV-1937204_3	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1937204_3	COG	COG5410	NA	NA
UHGV-1937204_3	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1937204_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-1937204_4	UniRef90	UniRef90_UPI001485B311	phage portal protein	NA
UHGV-1937204_4	eggNOG-mapper	449673.BACSTE_00582	Phage portal protein	NA
UHGV-1937204_4	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1937204_4	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1937204_5	KOfam	K06904	NA	NA
UHGV-1937204_5	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1937204_5	UniRef90	UniRef90_B0NM79	Phage prohead protease, HK97 family	NA
UHGV-1937204_5	eggNOG-mapper	449673.BACSTE_00581	Caudovirus prohead serine protease	NA
UHGV-1937204_5	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1937204_5	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1937204_5	COG	COG3740	Phage head maturation protease	NA
UHGV-1937204_5	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1937204_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-1937204_6	UniRef90	UniRef90_UPI001106E187	phage major capsid protein	NA
UHGV-1937204_6	eggNOG-mapper	449673.BACSTE_00580	Phage capsid family	NA
UHGV-1937204_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1937204_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1937204_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1937204_6	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-1937204_8	PHROG	phrog_26639	NA	unknown function
UHGV-1937204_8	eggNOG-mapper	449673.BACSTE_00578	NA	NA
UHGV-1937204_8	Structural annotation	PF20459	NA	NA
UHGV-1937204_9	PHROG	phrog_23418	NA	unknown function
UHGV-1937204_9	eggNOG-mapper	449673.BACSTE_00577	NA	NA
UHGV-1937204_10	PHROG	phrog_24272	NA	unknown function
UHGV-1937204_10	eggNOG-mapper	449673.BACSTE_00576	NA	NA
UHGV-1937204_10	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-1937204_12	PHROG	phrog_6195	tail protein	tail
UHGV-1937204_12	UniRef90	UniRef90_A0A374UT65	ABC transporter	NA
UHGV-1937204_12	eggNOG-mapper	449673.BACSTE_00574	NA	NA
UHGV-1937204_13	PHROG	phrog_26299	NA	unknown function
UHGV-1937204_13	eggNOG-mapper	411476.BACOVA_03935	NA	NA
UHGV-1937204_14	eggNOG-mapper	449673.BACSTE_00845	NA	NA
UHGV-1937204_16	UniRef90	UniRef90_A0A139LPL1	HTH_17 domain-containing protein	NA
UHGV-1937204_16	eggNOG-mapper	693979.Bache_0303	NA	NA
UHGV-1937204_16	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1937204_16	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-1937204_16	Structural annotation	PF12728, MF_01155, NF033787, COG3311	NA	NA
UHGV-1937204_17	KOfam	K19158	yoeB; toxin YoeB [EC:3.1.-.-]	NA
UHGV-1937204_17	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1937204_17	UniRef90	UniRef90_B0NMA6	Putative mRNA interferase YoeB	NA
UHGV-1937204_17	eggNOG-mapper	449673.BACSTE_00564	addiction module toxin, Txe YoeB family	NA
UHGV-1937204_17	Pfam	PF06769	YoeB-like toxin of bacterial type II toxin-antitoxin system	YoeB_toxin
UHGV-1937204_17	NCBIFam	TIGR02116.1	Txe/YoeB family addiction module toxin	NA
UHGV-1937204_17	COG	COG4115	Toxin component of the Txe-Axe toxin-antitoxin module, Txe/YoeB family	NA
UHGV-1937204_17	Structural annotation	PF06769, TIGR02116, COG4115	NA	NA
UHGV-1937204_18	KOfam	K19159	yefM; antitoxin YefM	NA
UHGV-1937204_18	PHROG	phrog_10078	NA	unknown function
UHGV-1937204_18	UniRef90	UniRef90_B0NMA5	Antitoxin	NA
UHGV-1937204_18	eggNOG-mapper	449673.BACSTE_00563	Antitoxin component of a toxin-antitoxin (TA) module	NA
UHGV-1937204_18	Pfam	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
UHGV-1937204_18	NCBIFam	TIGR01552.1	type II toxin-antitoxin system prevent-host-death family antitoxin	NA
UHGV-1937204_18	COG	COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	NA
UHGV-1937204_19	PHROG	phrog_26705	NA	unknown function
UHGV-1937204_19	UniRef90	UniRef90_A0A414Q7X1	Phage tail tape measure protein	NA
UHGV-1937204_19	eggNOG-mapper	657309.BXY_08300	Phage-related minor tail protein	NA
UHGV-1937204_19	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1937204_19	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1937204_19	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1937204_19	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1937204_20	PHROG	phrog_26233	NA	unknown function
UHGV-1937204_20	eggNOG-mapper	411476.BACOVA_03937	NA	NA
UHGV-1937204_21	PHROG	phrog_22157	NA	unknown function
UHGV-1937204_21	eggNOG-mapper	411476.BACOVA_03941	NA	NA
UHGV-1937204_21	Structural annotation	PF05629, PF17642, PF06605, TIGR01646, COG3157	NA	NA
UHGV-1937204_22	PHROG	phrog_26568	NA	unknown function
UHGV-1937204_22	eggNOG-mapper	1122971.BAME01000119_gene6178	NA	NA
UHGV-1937204_22	Structural annotation	PF02927, PF19266	NA	NA
UHGV-1937204_23	PHROG	phrog_38044	NA	unknown function
UHGV-1937204_23	UniRef90	UniRef90_UPI001E5F740B	NA	NA
UHGV-1937204_23	eggNOG-mapper	1236514.BAKL01000085_gene4861	NA	NA
UHGV-1937204_23	Structural annotation	PF04862, NF038128	NA	NA
UHGV-1937204_24	eggNOG-mapper	742727.HMPREF9447_04856	NA	NA
UHGV-1937204_25	eggNOG-mapper	693979.Bache_2416	nuclear chromosome segregation	NA
UHGV-1937204_25	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1937204_27	eggNOG-mapper	679935.Alfi_2719	NA	NA
UHGV-1937204_28	PHROG	phrog_19698	NA	unknown function
UHGV-1937204_28	eggNOG-mapper	1235788.C802_00116	NA	NA
UHGV-1937204_30	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1937204_30	PHROG	phrog_435	endolysin	lysis
UHGV-1937204_30	UniRef90	UniRef90_UPI0018997145	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1937204_30	eggNOG-mapper	657309.BXY_08040	COG NOG32858 non supervised orthologous group	NA
UHGV-1937204_30	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1937204_30	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1937204_30	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-1937204_31	Structural annotation	PF14607, MF_01372, NF038393	NA	NA
UHGV-1937204_33	PHROG	phrog_20787	virion structural protein	head and packaging
UHGV-1937204_33	eggNOG-mapper	449673.BACSTE_02041	Leucine-rich repeat (LRR) protein	NA
UHGV-1937204_33	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-1937204_36	UniRef90	UniRef90_A0A8D9UI10	Chromosomal replication initiator protein	NA
UHGV-1937204_36	eggNOG-mapper	762982.HMPREF9442_01200	Bacterial dnaA protein helix-turn-helix	NA
UHGV-1937204_36	Structural annotation	PF08299, NF004688	NA	NA
UHGV-1937204_37	PHROG	phrog_16490	NA	unknown function
UHGV-1937204_37	UniRef90	UniRef90_A0A7M1RSH1	Outer capsid protein/viral fiber	NA
UHGV-1937204_37	eggNOG-mapper	762968.HMPREF9441_00555	NA	NA
UHGV-1937204_38	PHROG	phrog_31654	NA	unknown function
UHGV-1937204_38	eggNOG-mapper	762968.HMPREF9441_00554	NA	NA
UHGV-1937204_39	PHROG	phrog_28898	NA	unknown function
UHGV-1937204_39	UniRef90	UniRef90_R5UN07	Conserved domain protein	NA
UHGV-1937204_39	eggNOG-mapper	762968.HMPREF9441_00553	NA	NA
UHGV-1937204_39	Structural annotation	PF10781	NA	NA
UHGV-1937204_40	PHROG	phrog_34053	NA	unknown function
UHGV-1937204_41	PHROG	phrog_38431	NA	unknown function
UHGV-1937204_41	UniRef90	UniRef90_R5U340	Conserved domain protein	NA
UHGV-1937204_41	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-1937204_42	UniRef90	UniRef90_F3QSP6	Conserved domain protein	NA
UHGV-1937204_42	eggNOG-mapper	762982.HMPREF9442_01206	NA	NA
UHGV-1937204_45	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1937204_45	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1937204_45	UniRef90	UniRef90_I9QJ75	KilA-N domain-containing protein	NA
UHGV-1937204_45	eggNOG-mapper	1121342.AUCO01000004_gene621	Phage antirepressor protein	NA
UHGV-1937204_45	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1937204_45	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1937204_45	COG	COG3617	Prophage antirepressor	NA
UHGV-1937204_45	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-1937204_47	UniRef90	UniRef90_A0A415IS58	LacI family DNA-binding transcriptional regulator	NA
UHGV-1937204_47	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1937204_48	PHROG	phrog_9236	pyrophosphatase	other
UHGV-1937204_48	eggNOG-mapper	657309.BXY_08510	NA	NA
UHGV-1937204_49	PHROG	phrog_874	NA	unknown function
UHGV-1937204_49	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-1937204_49	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1937204_50	eggNOG-mapper	657309.BXY_08540	NA	NA
UHGV-1937204_51	PHROG	phrog_12005	NA	unknown function
UHGV-1937204_54	UniRef90	UniRef90_A0A7K0JNA1	NA	NA
UHGV-1937204_55	Structural annotation	PF20020	NA	NA
UHGV-1937204_60	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1937204_60	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1937204_60	UniRef90	UniRef90_A0A1Y3YRG2	DNA helicase	NA
UHGV-1937204_60	eggNOG-mapper	1077285.AGDG01000032_gene4173	Participates in initiation and elongation during chromosome replication	NA
UHGV-1937204_60	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1937204_60	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1937204_60	COG	COG0305	Replicative DNA helicase	NA
UHGV-1937204_60	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1937204_61	PHROG	phrog_16304	NA	unknown function
UHGV-1937204_61	UniRef90	UniRef90_UPI001E631D8F	NA	NA
UHGV-1937204_61	eggNOG-mapper	742726.HMPREF9448_02012	HNH endonuclease	NA
UHGV-1937204_61	Pfam	PF19808	NA	DUF6291
UHGV-1937204_61	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1937204_63	PHROG	phrog_824	NA	unknown function
UHGV-1937204_63	UniRef90	UniRef90_UPI0004E5D9FF	VRR-NUC domain-containing protein	NA
UHGV-1937204_63	eggNOG-mapper	1122985.HMPREF1991_01533	VRR-NUC domain	NA
UHGV-1937204_63	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1937204_63	Structural annotation	PF08774	NA	NA
UHGV-1937204_65	PHROG	phrog_19572	NA	unknown function
UHGV-1937204_65	UniRef90	UniRef90_UPI000E46A408	NA	NA
UHGV-1937204_65	eggNOG-mapper	1227276.HMPREF9148_02498	COG NOG14445 non supervised orthologous group	NA
UHGV-1937204_65	Pfam	PF14902	NA	DUF4494
UHGV-1937204_65	Structural annotation	PF14902, COG2157	NA	NA
UHGV-1937204_66	PHROG	phrog_36980	NA	unknown function
UHGV-1937204_66	eggNOG-mapper	1268240.ATFI01000008_gene2556	NA	NA
UHGV-1937204_67	KOfam	K01143	exo; exodeoxyribonuclease (lambda-induced) [EC:3.1.11.3]	NA
UHGV-1937204_67	PHROG	phrog_149	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1937204_67	UniRef90	UniRef90_A0A414Q850	YqaJ domain-containing protein	NA
UHGV-1937204_67	eggNOG-mapper	1121100.JCM6294_520	YqaJ-like viral recombinase domain	NA
UHGV-1937204_67	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1937204_67	Structural annotation	TIGR03033, COG5377	NA	NA
UHGV-1937204_68	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1937204_68	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1937204_68	UniRef90	UniRef90_A0A414Q837	Recombinase RecT	NA
UHGV-1937204_68	eggNOG-mapper	1401067.HMPREF0872_03475	Recombinase, phage RecT family	NA
UHGV-1937204_68	Pfam	PF03837	RecT family	RecT
UHGV-1937204_68	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1937204_68	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1937204_68	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1937204_70	PHROG	phrog_27197	NA	unknown function
UHGV-1937204_70	COG	COG5164	Transcription elongation factor SPT5	NA