UHGV-1938815

Genome information

Genome length 61,702 bps

CDS count 91

Completeness 99.90% (high-quality)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-1938815
vOTU ID	vOTU-008912
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300007796\|Ga0105889_100122\|provirus_25618_87319
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.05
Jumbo phage	No

Genome content
Genome length	61,702 bps
GC content	43.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	91
CDS density	86.61%
Average CDS length	589.71 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1938815_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1938815_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1938815_1	UniRef90	UniRef90_A0A412QSQ6	Tyr recombinase domain-containing protein	NA
UHGV-1938815_1	eggNOG-mapper	411901.BACCAC_01099	Belongs to the 'phage' integrase family	NA
UHGV-1938815_1	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-1938815_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1938815_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1938815_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1938815_1	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1938815_5	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-1938815_5	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-1938815_5	UniRef90	UniRef90_A0A3D9A5P3	XRE family transcriptional regulator	NA
UHGV-1938815_5	eggNOG-mapper	435590.BVU_3426	Helix-turn-helix domain	NA
UHGV-1938815_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1938815_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1938815_10	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1938815_10	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1938815_10	UniRef90	UniRef90_A0A3R6AGK2	Terminase small subunit	NA
UHGV-1938815_10	eggNOG-mapper	449673.BACSTE_00584	Terminase small subunit	NA
UHGV-1938815_10	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1938815_10	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1938815_10	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1938815_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1938815_11	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1938815_11	UniRef90	UniRef90_A0A412QSL9	PBSX family phage terminase large subunit	NA
UHGV-1938815_11	eggNOG-mapper	1122971.BAME01000163_gene6625	Phage terminase large subunit	NA
UHGV-1938815_11	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1938815_11	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1938815_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-1938815_11	Structural annotation	PF04466, PF17289, MF_04145, MF_00034, TIGR01547, TIGR01630, COG1783, COG5362	NA	NA
UHGV-1938815_12	PHROG	phrog_12	portal protein	head and packaging
UHGV-1938815_12	UniRef90	UniRef90_A0A412QSN3	Phage portal protein	NA
UHGV-1938815_12	eggNOG-mapper	435590.BVU_2835	Phage portal protein	NA
UHGV-1938815_12	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1938815_12	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1938815_13	KOfam	K06904	NA	NA
UHGV-1938815_13	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1938815_13	UniRef90	UniRef90_A0A3R5X8P2	Phage prohead protein	NA
UHGV-1938815_13	eggNOG-mapper	1122971.BAME01000143_gene6476	Phage prohead protease, HK97 family	NA
UHGV-1938815_13	COG	COG3740	Phage head maturation protease	NA
UHGV-1938815_13	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1938815_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-1938815_14	UniRef90	UniRef90_A0A412QSP9	Phage major capsid protein	NA
UHGV-1938815_14	eggNOG-mapper	1347393.HG726021_gene375	Phage capsid family	NA
UHGV-1938815_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1938815_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1938815_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1938815_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1938815_16	eggNOG-mapper	1122971.BAME01000143_gene6480	NA	NA
UHGV-1938815_16	Structural annotation	PF20459	NA	NA
UHGV-1938815_17	PHROG	phrog_23418	NA	unknown function
UHGV-1938815_17	eggNOG-mapper	449673.BACSTE_00577	NA	NA
UHGV-1938815_18	PHROG	phrog_24272	NA	unknown function
UHGV-1938815_18	eggNOG-mapper	1347393.HG726021_gene379	NA	NA
UHGV-1938815_18	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-1938815_19	UniRef90	UniRef90_UPI001E51CDFF	ABC transporter	NA
UHGV-1938815_19	eggNOG-mapper	1347393.HG726021_gene380	NA	NA
UHGV-1938815_20	PHROG	phrog_26299	NA	unknown function
UHGV-1938815_21	PHROG	phrog_26233	NA	unknown function
UHGV-1938815_22	PHROG	phrog_26705	NA	unknown function
UHGV-1938815_22	eggNOG-mapper	762982.HMPREF9442_01189	NA	NA
UHGV-1938815_22	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1938815_23	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1938815_23	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1938815_23	UniRef90	UniRef90_A0A3R5XBS7	Phage antirepressor Ant	NA
UHGV-1938815_23	eggNOG-mapper	1236504.HMPREF2132_11510	BRO family, N-terminal domain	NA
UHGV-1938815_23	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1938815_23	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1938815_23	COG	COG3617	Prophage antirepressor	NA
UHGV-1938815_23	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-1938815_24	UniRef90	UniRef90_A0A412YGL7	KilA-N domain-containing protein	NA
UHGV-1938815_24	eggNOG-mapper	1121100.JCM6294_529	KilA-N domain	NA
UHGV-1938815_25	PHROG	phrog_518	Rha-like transcriptional regulator	transcription regulation
UHGV-1938815_25	UniRef90	UniRef90_UPI00189C6414	Rha family transcriptional regulator	NA
UHGV-1938815_25	eggNOG-mapper	1105171.H2A0H2_9CAUD	DNA binding	NA
UHGV-1938815_25	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1938815_25	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-1938815_26	UniRef90	UniRef90_UPI001C72D4CD	Rha family transcriptional regulator	NA
UHGV-1938815_26	eggNOG-mapper	1392486.JIAF01000004_gene847	Phage regulatory protein	NA
UHGV-1938815_26	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1938815_27	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-1938815_27	PHROG	phrog_28902	major tail protein	tail
UHGV-1938815_27	UniRef90	UniRef90_UPI001F20ED86	Ig-like domain-containing protein	NA
UHGV-1938815_27	eggNOG-mapper	720554.Clocl_2354	Bacterial Ig-like domain 2	NA
UHGV-1938815_27	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1938815_27	COG	COG3209	NA	NA
UHGV-1938815_27	Structural annotation	PF02368, PF19190, PF13629, PF08758, PF07092, MF_04116, MF_00791, NF033639, NF003967, COG5492, COG2967	NA	NA
UHGV-1938815_30	UniRef90	UniRef90_A0A496E197	Toxin-antitoxin system protein	NA
UHGV-1938815_30	eggNOG-mapper	763034.HMPREF9446_00909	NA	NA
UHGV-1938815_30	Structural annotation	PF07878, NF041793, COG4877	NA	NA
UHGV-1938815_31	UniRef90	UniRef90_UPI001F3D84E2	helix-turn-helix domain-containing protein	NA
UHGV-1938815_31	eggNOG-mapper	888743.HMPREF9141_0798	NA	NA
UHGV-1938815_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1938815_31	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1938815_36	PHROG	phrog_25289	NA	unknown function
UHGV-1938815_36	UniRef90	UniRef90_A0A412QSY5	Phage antirepressor protein	NA
UHGV-1938815_36	eggNOG-mapper	1268240.ATFI01000020_gene144	KilA-N domain	NA
UHGV-1938815_36	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-1938815_36	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1938815_36	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1938815_36	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-1938815_38	PHROG	phrog_22157	NA	unknown function
UHGV-1938815_38	eggNOG-mapper	1347393.HG726021_gene385	NA	NA
UHGV-1938815_38	Structural annotation	PF05629, PF17642, PF06605, TIGR01646, COG3157	NA	NA
UHGV-1938815_39	PHROG	phrog_26568	NA	unknown function
UHGV-1938815_39	eggNOG-mapper	1347393.HG726021_gene381	NA	NA
UHGV-1938815_39	Structural annotation	PF19266, PF10651	NA	NA
UHGV-1938815_40	PHROG	phrog_22546	NA	unknown function
UHGV-1938815_40	eggNOG-mapper	1235803.C825_03432	Phage minor structural protein	NA
UHGV-1938815_40	COG	COG4926	Phage-related protein	NA
UHGV-1938815_40	Structural annotation	PF04862, PF18141, PF08913, COG5278	NA	NA
UHGV-1938815_41	eggNOG-mapper	484018.BACPLE_02704	NA	NA
UHGV-1938815_43	eggNOG-mapper	1235803.C825_03435	translation initiation factor activity	NA
UHGV-1938815_43	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1938815_44	PHROG	phrog_5302	tail protein	tail
UHGV-1938815_44	eggNOG-mapper	445970.ALIPUT_02628	NA	NA
UHGV-1938815_44	Structural annotation	PF01105	NA	NA
UHGV-1938815_45	PHROG	phrog_11557	NA	unknown function
UHGV-1938815_45	eggNOG-mapper	445970.ALIPUT_02625	NA	NA
UHGV-1938815_47	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1938815_47	PHROG	phrog_822	amidase	lysis
UHGV-1938815_47	UniRef90	UniRef90_A0A173VI77	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1938815_47	eggNOG-mapper	1235803.C825_00174	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1938815_47	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1938815_47	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1938815_47	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-1938815_48	PHROG	phrog_26448	NA	unknown function
UHGV-1938815_48	eggNOG-mapper	1235803.C825_05324	NA	NA
UHGV-1938815_48	Pfam	PF20647	NA	DUF6808
UHGV-1938815_48	Structural annotation	PF20647	NA	NA
UHGV-1938815_49	Structural annotation	PF08299, NF004688	NA	NA
UHGV-1938815_50	PHROG	phrog_5990	NA	unknown function
UHGV-1938815_50	eggNOG-mapper	1189612.A33Q_1573	NA	NA
UHGV-1938815_50	Structural annotation	PF00227, MF_02113_A, TIGR03634, COG0638	NA	NA
UHGV-1938815_52	UniRef90	UniRef90_UPI000E481466	NA	NA
UHGV-1938815_53	UniRef90	UniRef90_A0A7M1RVK1	Nuclear pore complex-like protein	NA
UHGV-1938815_59	UniRef90	UniRef90_A0A496CXC5	NA	NA
UHGV-1938815_59	eggNOG-mapper	742727.HMPREF9447_04873	NA	NA
UHGV-1938815_59	Pfam	PF04448	NA	DUF551
UHGV-1938815_59	Structural annotation	PF04448	NA	NA
UHGV-1938815_61	PHROG	phrog_28300	NA	unknown function
UHGV-1938815_61	eggNOG-mapper	483215.BACFIN_06266	NA	NA
UHGV-1938815_62	PHROG	phrog_8684	NA	unknown function
UHGV-1938815_62	UniRef90	UniRef90_A0A173VH02	YopX protein	NA
UHGV-1938815_62	eggNOG-mapper	742727.HMPREF9447_04806	YopX protein	NA
UHGV-1938815_62	Pfam	PF09643	YopX protein	YopX
UHGV-1938815_62	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1938815_62	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1938815_64	PHROG	phrog_874	NA	unknown function
UHGV-1938815_64	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-1938815_64	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1938815_65	PHROG	phrog_37478	NA	unknown function
UHGV-1938815_67	eggNOG-mapper	471870.BACINT_00443	NA	NA
UHGV-1938815_68	KOfam	K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	NA
UHGV-1938815_68	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1938815_68	UniRef90	UniRef90_A0A3R5X8M2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1938815_68	eggNOG-mapper	1122947.FR7_2498	Cytosine-specific methyltransferase	NA
UHGV-1938815_68	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1938815_68	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1938815_68	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1938815_68	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1938815_68	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-1938815_71	PHROG	phrog_1408	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1938815_71	UniRef90	UniRef90_UPI001F03A329	NA	NA
UHGV-1938815_71	eggNOG-mapper	435591.BDI_0859	DnaD domain protein	NA
UHGV-1938815_71	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1938815_71	Structural annotation	PF09681, TIGR01714, COG3355	NA	NA
UHGV-1938815_74	PHROG	phrog_9226	NA	unknown function
UHGV-1938815_74	eggNOG-mapper	13689.BV96_04591	NA	NA
UHGV-1938815_76	PHROG	phrog_824	NA	unknown function
UHGV-1938815_76	UniRef90	UniRef90_A0A3R5XBR1	VRR-NUC domain-containing protein	NA
UHGV-1938815_76	eggNOG-mapper	411901.BACCAC_01208	NA	NA
UHGV-1938815_76	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1938815_78	PHROG	phrog_19572	NA	unknown function
UHGV-1938815_78	UniRef90	UniRef90_A0A174LVG4	NA	NA
UHGV-1938815_78	eggNOG-mapper	1122931.AUAE01000017_gene4240	Phage tail protein	NA
UHGV-1938815_78	Pfam	PF14902	NA	DUF4494
UHGV-1938815_78	Structural annotation	PF14902	NA	NA
UHGV-1938815_79	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1938815_79	UniRef90	UniRef90_A0A173VHK3	NUMOD4 motif	NA
UHGV-1938815_79	eggNOG-mapper	749413.E5DV63_9VIRU	HNH endonuclease	NA
UHGV-1938815_79	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1938815_79	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1938815_79	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1938815_79	Structural annotation	PF07463	NA	NA
UHGV-1938815_80	PHROG	phrog_319	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1938815_80	UniRef90	UniRef90_UPI00164A9C4B	NA	NA
UHGV-1938815_80	eggNOG-mapper	742767.HMPREF9456_02058	NA	NA
UHGV-1938815_80	Pfam	PF07105	NA	DUF1367
UHGV-1938815_80	Structural annotation	PF07105	NA	NA
UHGV-1938815_81	UniRef90	UniRef90_F3QQV6	Conserved domain protein	NA
UHGV-1938815_81	eggNOG-mapper	762982.HMPREF9442_00549	NA	NA
UHGV-1938815_83	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1938815_83	UniRef90	UniRef90_A0A173VJD5	ERF superfamily	NA
UHGV-1938815_83	eggNOG-mapper	1408428.JNJP01000005_gene5	ERF superfamily	NA
UHGV-1938815_83	Pfam	PF04404	ERF superfamily	ERF
UHGV-1938815_83	Structural annotation	PF04404	NA	NA
UHGV-1938815_84	PHROG	phrog_15773	NA	unknown function
UHGV-1938815_84	UniRef90	UniRef90_UPI001E50B81C	NA	NA
UHGV-1938815_88	PHROG	phrog_37809	NA	unknown function
UHGV-1938815_88	eggNOG-mapper	411901.BACCAC_02345	NA	NA
UHGV-1938815_91	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1938815_91	UniRef90	UniRef90_UPI001F28A013	XRE family transcriptional regulator	NA
UHGV-1938815_91	eggNOG-mapper	1121100.JCM6294_1579	Transcriptional regulator	NA
UHGV-1938815_91	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1938815_91	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1938815_91	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG2932	NA	NA