UHGV-1939154

Genome information

vOTU vOTU-020236

Genome length 31,039 bps

CDS count 47

Completeness 89.10% (medium-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-1939154
vOTU ID	vOTU-020236
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300006739\|Ga0101793_100367\|provirus_9200_44264
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.73
Jumbo phage	No

Genome content
Genome length	31,039 bps
GC content	56.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.34%
Average CDS length	611.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1939154_1	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-1939154_1	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-1939154_1	UniRef90	UniRef90_A0A564UIL3	HicB-like domain-containing protein	NA
UHGV-1939154_1	eggNOG-mapper	641112.ACOK01000116_gene2617	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-1939154_1	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-1939154_1	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1939154_1	Structural annotation	PF15919, COG1598	NA	NA
UHGV-1939154_2	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-1939154_2	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1939154_2	UniRef90	UniRef90_UPI0005D18D19	type II toxin-antitoxin system HicA family toxin	NA
UHGV-1939154_2	eggNOG-mapper	641112.ACOK01000116_gene2618	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-1939154_2	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-1939154_2	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-1939154_2	Structural annotation	PF07927, COG1724	NA	NA
UHGV-1939154_3	PHROG	phrog_199	holin	lysis
UHGV-1939154_3	UniRef90	UniRef90_R5AT18	Toxin secretion/phage lysis holin	NA
UHGV-1939154_3	eggNOG-mapper	1121344.JHZO01000003_gene684	toxin secretion phage lysis holin	NA
UHGV-1939154_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1939154_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1939154_3	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1939154_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1939154_4	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1939154_4	PHROG	phrog_9611	endolysin	lysis
UHGV-1939154_4	UniRef90	UniRef90_R5B1Z3	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1939154_4	eggNOG-mapper	97138.C820_00588	Ami_2	NA
UHGV-1939154_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1939154_4	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1939154_4	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1939154_5	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-1939154_5	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-1939154_5	eggNOG-mapper	203275.BFO_0575	Bacterial group 2 Ig-like protein	NA
UHGV-1939154_5	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1939154_5	COG	COG5492	NA	NA
UHGV-1939154_5	Structural annotation	PF02368, PF09423, MF_00575, NF003743, NF005261, COG5492	NA	NA
UHGV-1939154_6	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-1939154_6	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-1939154_7	Structural annotation	PF20622, NF033814, COG2372	NA	NA
UHGV-1939154_8	PHROG	phrog_6616	tail protein	tail
UHGV-1939154_8	Structural annotation	PF13550, PF09931, NF033848, COG3500	NA	NA
UHGV-1939154_9	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1939154_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1939154_10	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-1939154_10	eggNOG-mapper	1449050.JNLE01000003_gene3881	domain protein	NA
UHGV-1939154_10	COG	COG1511	NA	NA
UHGV-1939154_11	PHROG	phrog_706	NA	unknown function
UHGV-1939154_11	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-1939154_11	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-1939154_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1939154_11	Structural annotation	PF06854	NA	NA
UHGV-1939154_12	PHROG	phrog_11299	NA	unknown function
UHGV-1939154_12	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-1939154_12	Structural annotation	PF10666	NA	NA
UHGV-1939154_13	PHROG	phrog_3099	NA	unknown function
UHGV-1939154_13	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-1939154_13	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-1939154_14	PHROG	phrog_3266	tail completion	connector
UHGV-1939154_14	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-1939154_14	Structural annotation	PF12691	NA	NA
UHGV-1939154_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1939154_15	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-1939154_15	eggNOG-mapper	33035.JPJF01000106_gene3128	NA	NA
UHGV-1939154_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1939154_15	Structural annotation	PF11114	NA	NA
UHGV-1939154_16	PHROG	phrog_3366	NA	unknown function
UHGV-1939154_16	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1939154_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1939154_17	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-1939154_18	PHROG	phrog_267	major head protein	head and packaging
UHGV-1939154_18	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-1939154_18	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1939154_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1939154_19	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-1939154_19	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-1939154_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1939154_19	Structural annotation	PF06810	NA	NA
UHGV-1939154_20	PHROG	phrog_15041	NA	unknown function
UHGV-1939154_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1939154_21	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-1939154_21	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-1939154_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1939154_21	COG	COG2369	NA	NA
UHGV-1939154_21	Structural annotation	PF06152	NA	NA
UHGV-1939154_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-1939154_22	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-1939154_22	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-1939154_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1939154_23	PHROG	phrog_1233	NA	unknown function
UHGV-1939154_23	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-1939154_23	Structural annotation	PF13058	NA	NA
UHGV-1939154_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1939154_24	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-1939154_24	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-1939154_24	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-1939154_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1939154_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1939154_24	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1939154_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1939154_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-1939154_24	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1939154_25	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-1939154_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1939154_26	eggNOG-mapper	994573.T472_0208800	NA	NA
UHGV-1939154_26	Pfam	PF07374	NA	DUF1492
UHGV-1939154_26	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-1939154_27	PHROG	phrog_5781	NA	unknown function
UHGV-1939154_27	UniRef90	UniRef90_A0A810Q4L2	NA	NA
UHGV-1939154_27	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-1939154_27	Pfam	PF14359	NA	DUF4406
UHGV-1939154_27	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-1939154_27	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-1939154_28	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1939154_28	PHROG	phrog_1029	NA	unknown function
UHGV-1939154_28	UniRef90	UniRef90_A0A3S9MS91	DNA adenine methylase	NA
UHGV-1939154_28	eggNOG-mapper	1203606.HMPREF1526_01890	NA	NA
UHGV-1939154_28	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-1939154_28	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1939154_29	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1939154_29	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1939154_29	UniRef90	UniRef90_A0A350THX9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1939154_29	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1939154_29	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-1939154_29	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1939154_29	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1939154_29	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1939154_30	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-1939154_31	KOfam	K03700	recU; recombination protein U	NA
UHGV-1939154_31	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1939154_31	UniRef90	UniRef90_A0A1H0W5Y9	Holliday junction resolvase RecU	NA
UHGV-1939154_31	eggNOG-mapper	537013.CLOSTMETH_01720	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-1939154_31	Pfam	PF03838	Recombination protein U	RecU
UHGV-1939154_31	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-1939154_31	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-1939154_32	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1939154_32	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-1939154_32	Structural annotation	PF21578	NA	NA
UHGV-1939154_35	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-1939154_35	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-1939154_35	UniRef90	UniRef90_UPI0018F33479	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-1939154_35	eggNOG-mapper	1280390.CBQR020000174_gene4630	AbrB family transcriptional regulator	NA
UHGV-1939154_35	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-1939154_35	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-1939154_35	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-1939154_35	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-1939154_36	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-1939154_37	PHROG	phrog_585	NA	unknown function
UHGV-1939154_37	Pfam	PF10711	NA	DUF2513
UHGV-1939154_38	PHROG	phrog_750	NA	unknown function
UHGV-1939154_38	Structural annotation	PF13835, NF040858	NA	NA
UHGV-1939154_41	UniRef90	UniRef90_A0A2U1BEG8	Helix-turn-helix protein	NA
UHGV-1939154_41	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-1939154_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1939154_42	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1939154_42	UniRef90	UniRef90_R5AVU4	CI-like repressor	NA
UHGV-1939154_42	eggNOG-mapper	608538.HTH_1322	PBP superfamily domain	NA
UHGV-1939154_42	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1939154_42	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1939154_42	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1939154_43	KOfam	K07448	mrr; restriction system protein	NA
UHGV-1939154_43	PHROG	phrog_19856	NA	unknown function
UHGV-1939154_43	UniRef90	UniRef90_UPI00109C57D1	restriction endonuclease	NA
UHGV-1939154_43	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-1939154_43	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-1939154_43	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-1939154_43	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-1939154_43	Structural annotation	PF04471, MF_00722, NF040854, COG1787	NA	NA
UHGV-1939154_44	eggNOG-mapper	1262449.CP6013_2082	NA	NA
UHGV-1939154_45	Structural annotation	PF21227	NA	NA
UHGV-1939154_46	Pfam	PF05973	NA	Gp49
UHGV-1939154_46	Structural annotation	PF05973, TIGR02683, COG4683	NA	NA
UHGV-1939154_47	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1939154_47	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-1939154_47	UniRef90	UniRef90_UPI00051ABD2F	helix-turn-helix domain-containing protein	NA
UHGV-1939154_47	eggNOG-mapper	1280688.AUJB01000009_gene1936	Helix-turn-helix XRE-family like proteins	NA
UHGV-1939154_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1939154_47	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA