UHGV-1939309

Genome information

Genome length 37,612 bps

CDS count 51

Completeness 72.31% (medium-quality)

geNomad score 0.9502

Prediction confidence Confident

Genome information
Genome ID	UHGV-1939309
vOTU ID	vOTU-041112
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300008096\|Ga0114155_1000010\|provirus_44313_124206
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	72.31% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9502
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.62
Jumbo phage	No

Genome content
Genome length	37,612 bps
GC content	44.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.91%
Average CDS length	682.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1939309_1	PHROG	phrog_4611	minor head protein	head and packaging
UHGV-1939309_1	UniRef90	UniRef90_A0A174ZSI5	Phage minor capsid protein 2	NA
UHGV-1939309_1	eggNOG-mapper	86416.Clopa_3380	Phage minor capsid protein 2	NA
UHGV-1939309_1	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1939309_1	COG	COG2369	NA	NA
UHGV-1939309_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1939309_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1939309_2	UniRef90	UniRef90_A0A175A412	LexA repressor	NA
UHGV-1939309_2	eggNOG-mapper	1160721.RBI_II00559	Peptidase S24-like	NA
UHGV-1939309_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1939309_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1939309_2	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-1939309_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1939309_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1939309_3	UniRef90	UniRef90_A0A174ZWN9	Transcriptional regulator, y4mF family	NA
UHGV-1939309_3	eggNOG-mapper	657322.FPR_24330	DNA-binding helix-turn-helix protein	NA
UHGV-1939309_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1939309_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1939309_3	Structural annotation	PF01381, NF041575, COG1396	NA	NA
UHGV-1939309_6	PHROG	phrog_310	transposase	integration and excision
UHGV-1939309_6	UniRef90	UniRef90_A0A174ZTH8	Integrase core domain	NA
UHGV-1939309_6	eggNOG-mapper	1160721.RBI_II00555	Mu transposase, C-terminal	NA
UHGV-1939309_6	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-1939309_6	Pfam	PF00665	Integrase core domain	rve
UHGV-1939309_6	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-1939309_6	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-1939309_6	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-1939309_7	KOfam	K02450	gspA; general secretion pathway protein A	NA
UHGV-1939309_7	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-1939309_7	UniRef90	UniRef90_A0A175A3H1	AAA domain-containing protein	NA
UHGV-1939309_7	eggNOG-mapper	411473.RUMCAL_01909	AAA domain	NA
UHGV-1939309_7	Pfam	PF13401	AAA domain	AAA_22
UHGV-1939309_7	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-1939309_7	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-1939309_8	PHROG	phrog_4292	NA	unknown function
UHGV-1939309_8	eggNOG-mapper	645991.Sgly_0752	NA	NA
UHGV-1939309_11	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-1939309_11	UniRef90	UniRef90_A0A017RV38	SpoVT-AbrB domain-containing protein	NA
UHGV-1939309_11	eggNOG-mapper	1160721.RBI_II00552	SpoVT / AbrB like domain	NA
UHGV-1939309_11	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-1939309_11	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-1939309_12	eggNOG-mapper	1160721.RBI_II00551	NA	NA
UHGV-1939309_12	AcrCatalog	cluster_71843	NA	NA
UHGV-1939309_13	PHROG	phrog_286	NA	unknown function
UHGV-1939309_13	UniRef90	UniRef90_A0A6N8H086	Regulatory protein GemA	NA
UHGV-1939309_13	eggNOG-mapper	411473.RUMCAL_01915	NA	NA
UHGV-1939309_13	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-1939309_13	Structural annotation	PF06252	NA	NA
UHGV-1939309_14	eggNOG-mapper	411473.RUMCAL_01916	Mor transcription activator	NA
UHGV-1939309_14	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-1939309_14	Structural annotation	PF08765, NF040785, COG5566	NA	NA
UHGV-1939309_15	eggNOG-mapper	411473.RUMCAL_01917	NA	NA
UHGV-1939309_16	PHROG	phrog_25462	NA	unknown function
UHGV-1939309_16	UniRef90	UniRef90_A0A3D0M1R5	Type VI secretion protein (Fragment)	NA
UHGV-1939309_16	eggNOG-mapper	1160721.RBI_II00547	NA	NA
UHGV-1939309_16	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-1939309_17	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-1939309_17	UniRef90	UniRef90_R5GR06	PF11985 family protein	NA
UHGV-1939309_17	eggNOG-mapper	411902.CLOBOL_06314	NA	NA
UHGV-1939309_17	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-1939309_17	Structural annotation	PF11985	NA	NA
UHGV-1939309_18	KOfam	K05785	rfaH; transcriptional antiterminator RfaH	NA
UHGV-1939309_18	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-1939309_18	UniRef90	UniRef90_A0A174ZTH1	Transcription termination factor nusG	NA
UHGV-1939309_18	eggNOG-mapper	394503.Ccel_0204	Transcription termination factor nusG	NA
UHGV-1939309_18	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-1939309_18	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-1939309_18	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-1939309_20	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1939309_20	eggNOG-mapper	1160721.RBI_II00544	NA	NA
UHGV-1939309_20	Structural annotation	PF07141	NA	NA
UHGV-1939309_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1939309_21	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1939309_21	UniRef90	UniRef90_A0A355JEL9	PBSX family phage terminase large subunit	NA
UHGV-1939309_21	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-1939309_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1939309_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1939309_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-1939309_21	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1939309_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-1939309_22	UniRef90	UniRef90_A0A174ZTD4	Phage portal protein, putative, A118 family	NA
UHGV-1939309_22	eggNOG-mapper	1134413.ANNK01000120_gene2031	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1939309_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1939309_22	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1939309_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1939309_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1939309_23	UniRef90	UniRef90_A0A174ZWV0	Phage minor capsid protein 2	NA
UHGV-1939309_23	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-1939309_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1939309_23	COG	COG2369	NA	NA
UHGV-1939309_23	Structural annotation	PF06152	NA	NA
UHGV-1939309_25	PHROG	phrog_30343	NA	unknown function
UHGV-1939309_25	eggNOG-mapper	411473.RUMCAL_00285	NA	NA
UHGV-1939309_25	Structural annotation	PF11039, MF_02210, TIGR03585, COG1670	NA	NA
UHGV-1939309_26	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1939309_26	eggNOG-mapper	1415775.U729_2604	NA	NA
UHGV-1939309_27	PHROG	phrog_422	major head protein	head and packaging
UHGV-1939309_27	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-1939309_27	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-1939309_27	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1939309_29	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1939309_29	eggNOG-mapper	1449343.JQLQ01000002_gene1331	NA	NA
UHGV-1939309_30	PHROG	phrog_793	head-tail adaptor	connector
UHGV-1939309_30	UniRef90	UniRef90_A0A174ZXQ8	Minor capsid protein	NA
UHGV-1939309_30	eggNOG-mapper	1295642.H839_08324	Minor capsid protein	NA
UHGV-1939309_30	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-1939309_30	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-1939309_30	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1939309_31	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1939309_31	UniRef90	UniRef90_A0A174ZTE4	Minor capsid protein	NA
UHGV-1939309_31	eggNOG-mapper	997296.PB1_16189	Minor capsid protein	NA
UHGV-1939309_31	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1939309_31	Structural annotation	PF11114	NA	NA
UHGV-1939309_32	Structural annotation	PF12691	NA	NA
UHGV-1939309_33	PHROG	phrog_820	major tail protein	tail
UHGV-1939309_33	eggNOG-mapper	1295642.H839_08339	Belongs to the glycosyl hydrolase family 6	NA
UHGV-1939309_33	COG	COG5492	NA	NA
UHGV-1939309_33	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1939309_34	UniRef90	UniRef90_A0A143ZVS5	Cse1 domain-containing protein	NA
UHGV-1939309_34	Structural annotation	PF10666	NA	NA
UHGV-1939309_35	PHROG	phrog_706	NA	unknown function
UHGV-1939309_35	UniRef90	UniRef90_A0A175A387	Bacteriophage Gp15 protein	NA
UHGV-1939309_35	eggNOG-mapper	1134413.ANNK01000120_gene2016	Bacteriophage Gp15 protein	NA
UHGV-1939309_35	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1939309_35	Structural annotation	PF06854	NA	NA
UHGV-1939309_36	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1939309_36	UniRef90	UniRef90_A0A174ZXN5	Phage-related minor tail protein	NA
UHGV-1939309_36	eggNOG-mapper	1151292.QEW_4525	nuclear chromosome segregation	NA
UHGV-1939309_36	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1939309_36	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1939309_36	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1939309_37	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1939309_38	PHROG	phrog_25468	NA	unknown function
UHGV-1939309_38	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-1939309_38	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1939309_38	COG	COG4926	Phage-related protein	NA
UHGV-1939309_38	Structural annotation	PF14594, PF14879, NF033848, NF033675, COG3500	NA	NA
UHGV-1939309_39	PHROG	phrog_2566	NA	unknown function
UHGV-1939309_39	eggNOG-mapper	1294142.CINTURNW_1040	NA	NA
UHGV-1939309_40	PHROG	phrog_1401	NA	unknown function
UHGV-1939309_40	UniRef90	UniRef90_UPI00129D2DCF	NA	NA
UHGV-1939309_40	eggNOG-mapper	1499683.CCFF01000014_gene3897	NA	NA
UHGV-1939309_40	Structural annotation	PF07761	NA	NA
UHGV-1939309_41	PHROG	phrog_199	holin	lysis
UHGV-1939309_41	UniRef90	UniRef90_A0A174Z3N9	Phage-related holin (Lysis protein)	NA
UHGV-1939309_41	eggNOG-mapper	946235.CAER01000065_gene2430	Bacteriophage holin family	NA
UHGV-1939309_41	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1939309_41	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1939309_41	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1939309_41	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1939309_42	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1939309_42	PHROG	phrog_20388	endolysin	lysis
UHGV-1939309_42	UniRef90	UniRef90_A0A174YZL2	Cpl-7 lysozyme C-terminal domain	NA
UHGV-1939309_42	eggNOG-mapper	478749.BRYFOR_08515	Cpl-7 lysozyme C-terminal domain protein	NA
UHGV-1939309_42	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1939309_42	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-1939309_42	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1939309_42	Structural annotation	PF01510, PF18350, MF_04111, MF_01354, NF008758, COG3023, COG2139	NA	NA
UHGV-1939309_43	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1939309_43	PHROG	phrog_95	integrase	integration and excision
UHGV-1939309_43	UniRef90	UniRef90_A0A174Z8I6	Transposon Tn3 resolvase	NA
UHGV-1939309_43	eggNOG-mapper	1321778.HMPREF1982_04183	NA	NA
UHGV-1939309_43	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1939309_43	Pfam	PF07508	Recombinase	Recombinase
UHGV-1939309_43	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1939309_43	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1939309_43	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-1939309_44	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1939309_44	PHROG	phrog_95	integrase	integration and excision
UHGV-1939309_44	UniRef90	UniRef90_A0A174Z990	Recombinase	NA
UHGV-1939309_44	eggNOG-mapper	498761.HM1_0132	Recombinase	NA
UHGV-1939309_44	Pfam	PF07508	Recombinase	Recombinase
UHGV-1939309_44	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1939309_44	Structural annotation	PF07508, NF041201	NA	NA
UHGV-1939309_45	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1939309_45	PHROG	phrog_95	integrase	integration and excision
UHGV-1939309_45	UniRef90	UniRef90_A0A174YZM5	Multiple promoter invertase	NA
UHGV-1939309_45	eggNOG-mapper	1089553.Tph_c07850	Recombinase zinc beta ribbon domain	NA
UHGV-1939309_45	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1939309_45	Pfam	PF07508	Recombinase	Recombinase
UHGV-1939309_45	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1939309_45	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1939309_45	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-1939309_46	Pfam	PF20612	SHOCT domain	SHOCT_2
UHGV-1939309_47	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-1939309_47	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-1939309_47	UniRef90	UniRef90_A0A174Z6N6	mRNA interferase	NA
UHGV-1939309_47	eggNOG-mapper	742735.HMPREF9467_01839	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-1939309_47	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-1939309_47	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-1939309_47	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-1939309_49	KOfam	K02405	fliA, whiG; RNA polymerase sigma factor FliA	NA
UHGV-1939309_49	PHROG	phrog_13787	NA	unknown function
UHGV-1939309_49	UniRef90	UniRef90_A0A174YZL0	RNA polymerase factor sigma C	NA
UHGV-1939309_49	eggNOG-mapper	397291.C804_02210	NA	NA
UHGV-1939309_49	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-1939309_49	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1939309_49	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1939309_50	UniRef90	UniRef90_A0A174Z3W4	NA	NA
UHGV-1939309_50	Pfam	PF18692	NA	DUF5640