UHGV-1939404

Genome information

Genome length 40,687 bps

CDS count 54

Completeness 96.14% (high-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-1939404
vOTU ID	vOTU-066875
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300006747\|Ga0101801_100100\|provirus_12499_53185
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.14% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.72
Jumbo phage	No

Genome content
Genome length	40,687 bps
GC content	46.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	95.82%
Average CDS length	725.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1939404_2	PHROG	phrog_2143	NA	unknown function
UHGV-1939404_4	PHROG	phrog_419	NA	unknown function
UHGV-1939404_4	UniRef90	UniRef90_M9L786	Aminopeptidase N	NA
UHGV-1939404_4	eggNOG-mapper	1151292.QEW_4537	NA	NA
UHGV-1939404_4	Structural annotation	PF14083	NA	NA
UHGV-1939404_5	PHROG	phrog_23091	NA	unknown function
UHGV-1939404_6	eggNOG-mapper	1123511.KB905868_gene158	NA	NA
UHGV-1939404_6	Structural annotation	PF21277	NA	NA
UHGV-1939404_7	eggNOG-mapper	936573.HMPREF1147_1352	NA	NA
UHGV-1939404_9	PHROG	phrog_6722	tail fiber protein	tail
UHGV-1939404_9	eggNOG-mapper	1123288.SOV_2c10820	Phage Tail Collar Domain	NA
UHGV-1939404_9	COG	COG4675	Phage tail collar domain	NA
UHGV-1939404_10	PHROG	phrog_587	structural protein	head and packaging
UHGV-1939404_10	UniRef90	UniRef90_J5I3C5	PF11041 domain protein	NA
UHGV-1939404_10	eggNOG-mapper	936573.HMPREF1147_1347	NA	NA
UHGV-1939404_10	Pfam	PF11041	NA	DUF2612
UHGV-1939404_10	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-1939404_11	PHROG	phrog_6	baseplate protein	tail
UHGV-1939404_11	UniRef90	UniRef90_C9LUA0	Baseplate_J domain-containing protein	NA
UHGV-1939404_11	eggNOG-mapper	546271.Selsp_1315	Baseplate J-like protein	NA
UHGV-1939404_11	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1939404_11	COG	COG3299	NA	NA
UHGV-1939404_11	Structural annotation	PF04865, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1939404_12	PHROG	phrog_120	baseplate protein	tail
UHGV-1939404_12	UniRef90	UniRef90_A0A0U1KW63	Putative bacteriophage protein	NA
UHGV-1939404_12	eggNOG-mapper	1123288.SOV_2c10790	NA	NA
UHGV-1939404_12	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-1939404_13	UniRef90	UniRef90_A0A6N3BTS4	Gp138_N domain-containing protein	NA
UHGV-1939404_13	eggNOG-mapper	864563.HMPREF9166_1238	Baseplate assembly protein	NA
UHGV-1939404_13	Pfam	PF18352	NA	Gp138_N
UHGV-1939404_13	Pfam	PF18946	GpV Apex motif	Apex
UHGV-1939404_13	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-1939404_13	Structural annotation	PF18352, MF_01345_A, TIGR01644, COG4540	NA	NA
UHGV-1939404_14	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-1939404_14	UniRef90	UniRef90_A0A0U1KW78	NA	NA
UHGV-1939404_14	eggNOG-mapper	936573.HMPREF1147_1343	NA	NA
UHGV-1939404_14	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1939404_15	PHROG	phrog_349	virion structural protein	head and packaging
UHGV-1939404_15	eggNOG-mapper	1123288.SOV_2c10760	NA	NA
UHGV-1939404_16	PHROG	phrog_817	tail fiber protein	tail
UHGV-1939404_16	eggNOG-mapper	936573.HMPREF1147_1341	NA	NA
UHGV-1939404_16	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-1939404_16	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-1939404_17	PHROG	phrog_22539	NA	unknown function
UHGV-1939404_17	UniRef90	UniRef90_A0A6N3C003	Phage_lysozyme2 domain-containing protein	NA
UHGV-1939404_17	eggNOG-mapper	1123288.SOV_2c10740	NA	NA
UHGV-1939404_17	Pfam	PF21277	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
UHGV-1939404_17	Structural annotation	PF18013	NA	NA
UHGV-1939404_18	eggNOG-mapper	1123288.SOV_2c10720	NA	NA
UHGV-1939404_18	Pfam	PF21822	Phage tail assembly chaperone protein, TAC	Phage_TAC_15
UHGV-1939404_18	Structural annotation	PF21822	NA	NA
UHGV-1939404_19	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-1939404_19	UniRef90	UniRef90_J4TYN4	PF11681 family protein	NA
UHGV-1939404_19	eggNOG-mapper	546271.Selsp_1324	NA	NA
UHGV-1939404_19	Pfam	PF11681	Bacteriophage KPP10, Structural protein ORF10	KPP10_Orf10
UHGV-1939404_19	Structural annotation	PF11681, TIGR02241, COG5437	NA	NA
UHGV-1939404_20	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-1939404_20	UniRef90	UniRef90_J4TYJ6	PF11863 domain protein	NA
UHGV-1939404_20	eggNOG-mapper	936573.HMPREF1147_1336	NA	NA
UHGV-1939404_20	Pfam	PF11863	NA	DUF3383
UHGV-1939404_20	Structural annotation	PF11863, COG3497	NA	NA
UHGV-1939404_21	PHROG	phrog_1973	NA	unknown function
UHGV-1939404_21	UniRef90	UniRef90_A0A357NAG8	Aldehyde dehydrogenase	NA
UHGV-1939404_21	eggNOG-mapper	864563.HMPREF9166_1247	NA	NA
UHGV-1939404_21	Structural annotation	PF09646	NA	NA
UHGV-1939404_22	PHROG	phrog_939	head protein	head and packaging
UHGV-1939404_22	eggNOG-mapper	665942.HMPREF1022_02292	NA	NA
UHGV-1939404_22	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1939404_23	PHROG	phrog_222	tail protein	tail
UHGV-1939404_23	UniRef90	UniRef90_C9LU87	Putative bacteriophage protein	NA
UHGV-1939404_23	eggNOG-mapper	864563.HMPREF9166_1249	NA	NA
UHGV-1939404_24	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-1939404_24	UniRef90	UniRef90_J4UZ93	PF13262 family protein	NA
UHGV-1939404_24	eggNOG-mapper	936573.HMPREF1147_1332	NA	NA
UHGV-1939404_24	Pfam	PF13262	NA	DUF4054
UHGV-1939404_24	Structural annotation	PF13262	NA	NA
UHGV-1939404_25	Structural annotation	PF07498	NA	NA
UHGV-1939404_26	PHROG	phrog_264	major head protein	head and packaging
UHGV-1939404_26	UniRef90	UniRef90_UPI001C39DBF5	NA	NA
UHGV-1939404_26	eggNOG-mapper	864563.HMPREF9166_1252	NA	NA
UHGV-1939404_26	Pfam	PF09950	NA	DUF2184
UHGV-1939404_26	COG	COG4834	NA	NA
UHGV-1939404_26	Structural annotation	PF09950, MF_04113, TIGR01554, COG4834	NA	NA
UHGV-1939404_27	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-1939404_27	UniRef90	UniRef90_A0A0U1KXM2	Putative bacteriophage protein	NA
UHGV-1939404_27	eggNOG-mapper	1123288.SOV_2c10620	NA	NA
UHGV-1939404_27	Structural annotation	PF09956	NA	NA
UHGV-1939404_28	KOfam	K09960	NA	NA
UHGV-1939404_28	PHROG	phrog_16985	NA	unknown function
UHGV-1939404_28	UniRef90	UniRef90_A0A0U1KW67	NA	NA
UHGV-1939404_28	eggNOG-mapper	1123288.SOV_2c10610	NA	NA
UHGV-1939404_28	Pfam	PF09979	NA	DUF2213
UHGV-1939404_28	COG	COG3566	NA	NA
UHGV-1939404_28	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-1939404_29	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-1939404_29	UniRef90	UniRef90_A0A6N3C2W6	Phage Mu protein F like protein	NA
UHGV-1939404_29	eggNOG-mapper	546271.Selsp_1335	head morphogenesis protein, SPP1 gp7	NA
UHGV-1939404_29	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1939404_29	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1939404_29	COG	COG2369	NA	NA
UHGV-1939404_29	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-1939404_30	KOfam	K09961	NA	NA
UHGV-1939404_30	PHROG	phrog_146	portal protein	head and packaging
UHGV-1939404_30	UniRef90	UniRef90_UPI000CF8744B	NA	NA
UHGV-1939404_30	eggNOG-mapper	864563.HMPREF9166_1258	NA	NA
UHGV-1939404_30	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-1939404_30	Pfam	PF18809	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease1	PBECR1
UHGV-1939404_30	NCBIFam	TIGR01555.1	phage-associated protein, HI1409 family	NA
UHGV-1939404_30	COG	COG3567	NA	NA
UHGV-1939404_30	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-1939404_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1939404_31	PHROG	phrog_10250	NA	unknown function
UHGV-1939404_31	UniRef90	UniRef90_A0A6N3BW23	Terminase-like family protein	NA
UHGV-1939404_31	eggNOG-mapper	1200792.AKYF01000023_gene861	Phage terminase large subunit	NA
UHGV-1939404_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1939404_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1939404_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-1939404_31	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1939404_32	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-1939404_32	UniRef90	UniRef90_UPI0018750E21	phage terminase small subunit	NA
UHGV-1939404_32	eggNOG-mapper	1401067.HMPREF0872_00325	DNA packaging	NA
UHGV-1939404_32	COG	COG5484	NA	NA
UHGV-1939404_32	Structural annotation	PF10668, PF01920, NF040601, COG5484	NA	NA
UHGV-1939404_33	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1939404_33	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1939404_33	UniRef90	UniRef90_W1V9U1	Methyltransferase	NA
UHGV-1939404_33	eggNOG-mapper	1123288.SOV_2c03720	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1939404_33	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1939404_33	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1939404_33	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1939404_33	COG	COG0863	DNA modification methylase	NA
UHGV-1939404_33	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-1939404_34	eggNOG-mapper	592028.GCWU000321_01368	NA	NA
UHGV-1939404_34	Structural annotation	PF07374, NF005248	NA	NA
UHGV-1939404_35	PHROG	phrog_1225	NA	unknown function
UHGV-1939404_35	UniRef90	UniRef90_UPI001478DC38	NA	NA
UHGV-1939404_35	Pfam	PF11753	NA	DUF3310
UHGV-1939404_36	PHROG	phrog_7964	NA	unknown function
UHGV-1939404_36	UniRef90	UniRef90_UPI00103291C8	polymer-forming cytoskeletal protein	NA
UHGV-1939404_36	eggNOG-mapper	445972.ANACOL_01820	COG NOG06285 non supervised orthologous group	NA
UHGV-1939404_36	Pfam	PF04519	Polymer-forming cytoskeletal	Bactofilin
UHGV-1939404_36	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-1939404_36	Structural annotation	NF040481, COG2171	NA	NA
UHGV-1939404_39	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1939404_39	UniRef90	UniRef90_UPI0019578D90	NA	NA
UHGV-1939404_39	eggNOG-mapper	679201.HMPREF9334_00466	NA	NA
UHGV-1939404_39	Pfam	PF06048	NA	DUF927
UHGV-1939404_39	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-1939404_39	COG	COG5519	NA	NA
UHGV-1939404_39	Structural annotation	PF06048, PF16793, PF18662, MF_00700, NF040561, TIGR00368, COG5519, COG1467	NA	NA
UHGV-1939404_40	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1939404_40	UniRef90	UniRef90_R5SSW5	VRR-NUC domain-containing protein	NA
UHGV-1939404_40	eggNOG-mapper	936572.HMPREF1148_0674	VRR-NUC domain	NA
UHGV-1939404_40	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1939404_40	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-1939404_41	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-1939404_41	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1939404_41	UniRef90	UniRef90_R5SL79	Type III restriction enzyme res subunit	NA
UHGV-1939404_41	eggNOG-mapper	936572.HMPREF1148_0675	helicase superfamily c-terminal domain	NA
UHGV-1939404_41	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-1939404_41	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1939404_41	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1939404_41	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1939404_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1939404_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1939404_42	UniRef90	UniRef90_R5T9W3	Single-stranded DNA-binding protein	NA
UHGV-1939404_42	eggNOG-mapper	936572.HMPREF1148_0676	single-stranded DNA binding	NA
UHGV-1939404_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1939404_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1939404_42	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-1939404_43	PHROG	phrog_1366	NA	unknown function
UHGV-1939404_43	UniRef90	UniRef90_R5T4I4	AAA domain-containing protein	NA
UHGV-1939404_43	eggNOG-mapper	1123288.SOV_1c03840	AAA domain	NA
UHGV-1939404_43	Pfam	PF13479	AAA domain	AAA_24
UHGV-1939404_43	COG	COG0468	RecA/RadA recombinase	NA
UHGV-1939404_43	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1939404_44	PHROG	phrog_674	NA	unknown function
UHGV-1939404_44	UniRef90	UniRef90_UPI0019577DA3	NA	NA
UHGV-1939404_44	eggNOG-mapper	1391647.AVSV01000003_gene1789	NA	NA
UHGV-1939404_44	Pfam	PF07083	NA	DUF1351
UHGV-1939404_44	Structural annotation	PF07083	NA	NA
UHGV-1939404_45	UniRef90	UniRef90_UPI00195D57F8	3D domain-containing protein	NA
UHGV-1939404_45	eggNOG-mapper	883156.HMPREF9282_00524	3D domain protein	NA
UHGV-1939404_45	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-1939404_45	Structural annotation	PF03330, MF_02071, TIGR00413, COG3584	NA	NA
UHGV-1939404_48	PHROG	phrog_14367	NA	unknown function
UHGV-1939404_48	UniRef90	UniRef90_A0A134CHW2	LysM domain-containing protein	NA
UHGV-1939404_48	eggNOG-mapper	1123288.SOV_5c02190	Lysin motif	NA
UHGV-1939404_48	Pfam	PF01476	LysM domain	LysM
UHGV-1939404_48	COG	COG1388	LysM repeat	NA
UHGV-1939404_48	Structural annotation	PF01476, MF_02014, NF010723, COG1388	NA	NA
UHGV-1939404_49	PHROG	phrog_6058	NA	unknown function
UHGV-1939404_50	UniRef90	UniRef90_A0A658JW31	Toxin-antitoxin system, antitoxin component, Xre family protein	NA
UHGV-1939404_50	eggNOG-mapper	478749.BRYFOR_07571	NA	NA
UHGV-1939404_50	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-1939404_51	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1939404_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1939404_51	UniRef90	UniRef90_A0A3E3DX48	Helix-turn-helix domain-containing protein	NA
UHGV-1939404_51	eggNOG-mapper	1123511.KB905868_gene209	Helix-turn-helix XRE-family like proteins	NA
UHGV-1939404_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1939404_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1939404_51	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-1939404_52	PHROG	phrog_87	metallo-protease	other
UHGV-1939404_52	UniRef90	UniRef90_UPI000E707E4F	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1939404_52	eggNOG-mapper	332101.JIBU02000023_gene4822	IrrE N-terminal-like domain	NA
UHGV-1939404_52	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1939404_52	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1939404_52	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1939404_53	KOfam	K07449	K07449; similar to archaeal holliday junction resolvase and Mrr protein	NA
UHGV-1939404_53	PHROG	phrog_19856	NA	unknown function
UHGV-1939404_53	UniRef90	UniRef90_A0A7Y4TJJ4	Restriction endonuclease	NA
UHGV-1939404_53	eggNOG-mapper	192952.MM_3294	Restriction endonuclease	NA
UHGV-1939404_53	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-1939404_53	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-1939404_53	Structural annotation	PF04471, MF_00584, NF040854, COG1787	NA	NA
UHGV-1939404_54	KOfam	K14059	int; integrase	NA
UHGV-1939404_54	PHROG	phrog_1	integrase	integration and excision
UHGV-1939404_54	UniRef90	UniRef90_A0A1B3WF07	Tyr recombinase domain-containing protein	NA
UHGV-1939404_54	eggNOG-mapper	910314.HMPREF9220_0648	Belongs to the 'phage' integrase family	NA
UHGV-1939404_54	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1939404_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1939404_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1939404_54	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA