UHGV-1940211

Genome information

Genome length 45,795 bps

CDS count 72

Completeness 67.61% (medium-quality)

geNomad score 0.9700

Prediction confidence Confident

Genome information
Genome ID	UHGV-1940211
vOTU ID	vOTU-015848
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300007853\|Ga0114093_100067\|provirus_124143_169937
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9700
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.06
Jumbo phage	No

Genome content
Genome length	45,795 bps
GC content	41.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	91.86%
Average CDS length	587.46 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1940211_1	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1940211_1	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1940211_1	UniRef90	UniRef90_W0EQW7	Replicative DNA helicase	NA
UHGV-1940211_1	eggNOG-mapper	742726.HMPREF9448_01056	Participates in initiation and elongation during chromosome replication	NA
UHGV-1940211_1	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1940211_1	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1940211_1	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-1940211_1	COG	COG0305	Replicative DNA helicase	NA
UHGV-1940211_1	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1940211_3	KOfam	K07082	K07082; UPF0755 protein	NA
UHGV-1940211_3	UniRef90	UniRef90_K0XA14	Endolytic murein transglycosylase	NA
UHGV-1940211_3	eggNOG-mapper	742726.HMPREF9448_01054	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation	NA
UHGV-1940211_3	Pfam	PF02618	YceG-like family	YceG
UHGV-1940211_3	NCBIFam	TIGR00247.1	endolytic transglycosylase MltG	NA
UHGV-1940211_3	COG	COG1559	Endolytic transglycosylase MltG, terminates peptidoglycan polymerization	NA
UHGV-1940211_3	HAMAP	MF_02065	Endolytic murein transglycosylase [mltG]	NA
UHGV-1940211_4	UniRef90	UniRef90_UPI000623B17C	helix-turn-helix domain-containing protein	NA
UHGV-1940211_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1940211_4	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-1940211_4	Structural annotation	PF01381, TIGR03070, COG1813	NA	NA
UHGV-1940211_7	PHROG	phrog_35041	NA	unknown function
UHGV-1940211_8	UniRef90	UniRef90_F3QSP6	Conserved domain protein	NA
UHGV-1940211_8	eggNOG-mapper	762968.HMPREF9441_00550	NA	NA
UHGV-1940211_9	PHROG	phrog_38431	NA	unknown function
UHGV-1940211_9	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-1940211_9	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-1940211_10	PHROG	phrog_34053	NA	unknown function
UHGV-1940211_11	PHROG	phrog_28898	NA	unknown function
UHGV-1940211_11	UniRef90	UniRef90_R5UN07	Conserved domain protein	NA
UHGV-1940211_11	eggNOG-mapper	762968.HMPREF9441_00553	NA	NA
UHGV-1940211_11	Structural annotation	PF10781	NA	NA
UHGV-1940211_12	PHROG	phrog_31654	NA	unknown function
UHGV-1940211_12	eggNOG-mapper	762968.HMPREF9441_00554	NA	NA
UHGV-1940211_13	PHROG	phrog_16490	NA	unknown function
UHGV-1940211_13	UniRef90	UniRef90_A0A7M1RSH1	Outer capsid protein/viral fiber	NA
UHGV-1940211_13	eggNOG-mapper	762968.HMPREF9441_00555	NA	NA
UHGV-1940211_14	Structural annotation	PF08299, NF004688	NA	NA
UHGV-1940211_15	eggNOG-mapper	1347393.HG726021_gene391	NA	NA
UHGV-1940211_16	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-1940211_16	PHROG	phrog_894	endolysin	lysis
UHGV-1940211_16	UniRef90	UniRef90_UPI0018977466	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-1940211_16	eggNOG-mapper	449673.BACSTE_00851	Peptidase M15	NA
UHGV-1940211_16	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-1940211_16	COG	COG3108	NA	NA
UHGV-1940211_16	Structural annotation	PF08291, COG3108	NA	NA
UHGV-1940211_17	KOfam	K05811	yfiM; putative lipoprotein	NA
UHGV-1940211_17	COG	COG5544	NA	NA
UHGV-1940211_17	Structural annotation	PF04892, NF008028, COG5544	NA	NA
UHGV-1940211_18	PHROG	phrog_19698	NA	unknown function
UHGV-1940211_18	eggNOG-mapper	1235788.C802_00116	NA	NA
UHGV-1940211_19	eggNOG-mapper	1203611.KB894547_gene2599	NA	NA
UHGV-1940211_20	Structural annotation	PF13360, MF_03022, NF008258, COG1520	NA	NA
UHGV-1940211_21	Structural annotation	PF21226	NA	NA
UHGV-1940211_22	PHROG	phrog_24616	NA	unknown function
UHGV-1940211_22	UniRef90	UniRef90_F3PDX6	Conserved domain protein	NA
UHGV-1940211_22	eggNOG-mapper	762984.HMPREF9445_00184	NA	NA
UHGV-1940211_22	Structural annotation	PF20459	NA	NA
UHGV-1940211_23	PHROG	phrog_11226	portal protein	head and packaging
UHGV-1940211_23	eggNOG-mapper	762984.HMPREF9445_00183	NA	NA
UHGV-1940211_23	Structural annotation	PF04860, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-1940211_24	PHROG	phrog_37138	NA	unknown function
UHGV-1940211_24	eggNOG-mapper	1236514.BAKL01000015_gene1623	NA	NA
UHGV-1940211_25	PHROG	phrog_21217	NA	unknown function
UHGV-1940211_25	eggNOG-mapper	357276.EL88_08365	NA	NA
UHGV-1940211_26	PHROG	phrog_38780	NA	unknown function
UHGV-1940211_26	UniRef90	UniRef90_F3PDX2	Conserved domain protein	NA
UHGV-1940211_26	eggNOG-mapper	357276.EL88_08370	NA	NA
UHGV-1940211_26	Structural annotation	PF05065, MF_04119, NF033394, COG4653	NA	NA
UHGV-1940211_27	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1940211_27	PHROG	phrog_33547	NA	unknown function
UHGV-1940211_27	UniRef90	UniRef90_UPI00189FE8C2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1940211_27	eggNOG-mapper	1347393.HG726026_gene2525	Clp protease	NA
UHGV-1940211_27	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1940211_27	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1940211_27	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1940211_28	PHROG	phrog_17790	NA	unknown function
UHGV-1940211_28	eggNOG-mapper	1227276.HMPREF9148_02470	NA	NA
UHGV-1940211_29	PHROG	phrog_37298	NA	unknown function
UHGV-1940211_29	UniRef90	UniRef90_A0A0P0M3D9	Erythrocyte binding protein 1	NA
UHGV-1940211_29	eggNOG-mapper	357276.EL88_08385	domain protein	NA
UHGV-1940211_29	COG	COG1511	NA	NA
UHGV-1940211_30	PHROG	phrog_33698	NA	unknown function
UHGV-1940211_30	eggNOG-mapper	1236514.BAKL01000015_gene1630	NA	NA
UHGV-1940211_30	Structural annotation	NF033848, COG4379	NA	NA
UHGV-1940211_31	Structural annotation	PF12245, PF06199, TIGR02126, TIGR04488, COG4718	NA	NA
UHGV-1940211_32	PHROG	phrog_31246	NA	unknown function
UHGV-1940211_32	eggNOG-mapper	742767.HMPREF9456_03374	NA	NA
UHGV-1940211_33	PHROG	phrog_33245	NA	unknown function
UHGV-1940211_33	eggNOG-mapper	1122931.AUAE01000005_gene3264	NA	NA
UHGV-1940211_33	Structural annotation	PF05657, COG5003	NA	NA
UHGV-1940211_34	PHROG	phrog_28240	NA	unknown function
UHGV-1940211_34	UniRef90	UniRef90_F3PDW0	Conserved domain protein	NA
UHGV-1940211_34	eggNOG-mapper	762984.HMPREF9445_00168	NA	NA
UHGV-1940211_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1940211_35	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-1940211_35	UniRef90	UniRef90_UPI00189FAE03	terminase large subunit	NA
UHGV-1940211_35	eggNOG-mapper	1122981.AUME01000026_gene530	Terminase RNAseH like domain	NA
UHGV-1940211_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1940211_35	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1940211_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-1940211_35	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1940211_36	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1940211_36	UniRef90	UniRef90_UPI00189DC102	helix-turn-helix domain containing protein	NA
UHGV-1940211_36	eggNOG-mapper	457424.BFAG_02415	Helix-turn-helix of insertion element transposase	NA
UHGV-1940211_36	Pfam	PF20901	Bacteriophage Sf6, terminase small subunit-like	Sf6_terminase
UHGV-1940211_36	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1940211_36	Structural annotation	PF07141	NA	NA
UHGV-1940211_37	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-1940211_37	PHROG	phrog_5696	NA	unknown function
UHGV-1940211_37	UniRef90	UniRef90_A0A6L5XAE6	N-6 DNA methylase	NA
UHGV-1940211_37	eggNOG-mapper	908612.HMPREF9720_2193	COG NOG31012 non supervised orthologous group	NA
UHGV-1940211_37	PADLOC	MTase_I_00010	Type I methyltransferase	RM
UHGV-1940211_37	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-1940211_37	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-1940211_39	UniRef90	UniRef90_UPI001898A249	NA	NA
UHGV-1940211_39	eggNOG-mapper	1492738.FEM21_02100	NA	NA
UHGV-1940211_39	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-1940211_39	Structural annotation	PF13274, COG3600	NA	NA
UHGV-1940211_40	PHROG	phrog_874	NA	unknown function
UHGV-1940211_40	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-1940211_40	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1940211_42	PHROG	phrog_17873	NA	unknown function
UHGV-1940211_43	PHROG	phrog_32914	NA	unknown function
UHGV-1940211_46	PHROG	phrog_11564	DNA methyltransferase	other
UHGV-1940211_46	UniRef90	UniRef90_UPI000EF0315D	SAM-dependent methyltransferase	NA
UHGV-1940211_46	eggNOG-mapper	873513.HMPREF6485_1350	Methyltransferase domain	NA
UHGV-1940211_46	PADLOC	oMTase_00019	orphan methyltransferase	RM
UHGV-1940211_46	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-1940211_46	COG	COG1041	tRNA G10 N-methylase Trm11	NA
UHGV-1940211_46	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-1940211_47	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1940211_47	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1940211_47	UniRef90	UniRef90_UPI001898193D	site-specific DNA-methyltransferase	NA
UHGV-1940211_47	eggNOG-mapper	1268240.ATFI01000007_gene432	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1940211_47	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1940211_47	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1940211_47	COG	COG0863	DNA modification methylase	NA
UHGV-1940211_47	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1940211_48	Pfam	PF20338	NA	DUF6633
UHGV-1940211_49	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1940211_49	UniRef90	UniRef90_UPI001E6025FB	NA	NA
UHGV-1940211_49	eggNOG-mapper	357276.EL88_11475	NA	NA
UHGV-1940211_49	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1940211_49	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1940211_49	Structural annotation	PF14297	NA	NA
UHGV-1940211_53	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1940211_53	eggNOG-mapper	1122971.BAME01000006_gene913	NA	NA
UHGV-1940211_53	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-1940211_54	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1940211_54	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1940211_54	UniRef90	UniRef90_UPI00189E630B	site-specific DNA-methyltransferase	NA
UHGV-1940211_54	eggNOG-mapper	1125725.HMPREF1325_1835	DNA methylase	NA
UHGV-1940211_54	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1940211_54	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1940211_54	COG	COG0863	DNA modification methylase	NA
UHGV-1940211_54	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-1940211_56	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1940211_56	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1940211_56	UniRef90	UniRef90_UPI0018984E82	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1940211_56	eggNOG-mapper	1033733.CAEK01000007_gene1648	Cytosine-specific methyltransferase	NA
UHGV-1940211_56	PADLOC	MTase_II_00174	Type II methyltransferase	RM
UHGV-1940211_56	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1940211_56	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1940211_56	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1940211_56	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-1940211_57	PHROG	phrog_19572	NA	unknown function
UHGV-1940211_57	UniRef90	UniRef90_UPI00189ABE28	NA	NA
UHGV-1940211_57	eggNOG-mapper	1124780.ANNU01000020_gene3274	NA	NA
UHGV-1940211_57	Pfam	PF14902	NA	DUF4494
UHGV-1940211_57	Structural annotation	PF14902, COG2157	NA	NA
UHGV-1940211_61	PHROG	phrog_149	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1940211_61	UniRef90	UniRef90_UPI00189B15FD	YqaJ viral recombinase family protein	NA
UHGV-1940211_61	eggNOG-mapper	1121100.JCM6294_520	YqaJ-like viral recombinase domain	NA
UHGV-1940211_61	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1940211_61	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1940211_62	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1940211_62	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1940211_62	UniRef90	UniRef90_UPI0018980A71	recombinase RecT	NA
UHGV-1940211_62	eggNOG-mapper	1121100.JCM6294_519	RecT family	NA
UHGV-1940211_62	Pfam	PF03837	RecT family	RecT
UHGV-1940211_62	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1940211_62	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1940211_62	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1940211_64	KOfam	K07686	uhpA; two-component system, NarL family, uhpT operon response regulator UhpA	NA
UHGV-1940211_64	UniRef90	UniRef90_UPI001E63A3BF	LuxR C-terminal-related transcriptional regulator	NA
UHGV-1940211_64	eggNOG-mapper	762984.HMPREF9445_00144	helix_turn_helix, Lux Regulon	NA
UHGV-1940211_64	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-1940211_64	Structural annotation	PF00196, COG2771	NA	NA
UHGV-1940211_68	UniRef90	UniRef90_A0A174RXI4	Helix-turn-helix transcriptional regulator	NA
UHGV-1940211_68	eggNOG-mapper	1349822.NSB1T_12435	NA	NA
UHGV-1940211_68	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-1940211_69	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1940211_69	UniRef90	UniRef90_UPI00189B71B0	LexA family transcriptional regulator	NA
UHGV-1940211_69	eggNOG-mapper	357276.EL88_08540	NA	NA
UHGV-1940211_69	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1940211_69	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1940211_69	Structural annotation	PF01381, PF00717, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-1940211_70	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-1940211_70	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1940211_70	UniRef90	UniRef90_UPI00189EE43E	type I restriction endonuclease	NA
UHGV-1940211_70	eggNOG-mapper	411901.BACCAC_01135	Type I restriction enzyme HsdR protein	NA
UHGV-1940211_70	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-1940211_70	COG	COG4748	NA	NA
UHGV-1940211_70	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-1940211_71	Structural annotation	PF11320	NA	NA
UHGV-1940211_72	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1940211_72	PHROG	phrog_1	integrase	integration and excision
UHGV-1940211_72	UniRef90	UniRef90_UPI00189ED707	tyrosine-type recombinase/integrase	NA
UHGV-1940211_72	eggNOG-mapper	411479.BACUNI_00309	Belongs to the 'phage' integrase family	NA
UHGV-1940211_72	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1940211_72	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1940211_72	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1940211_72	Structural annotation	PF00589, MF_01808, NF002331, COG4974	NA	NA